Wall clock time and date at job start Mon Mar 30 2020 03:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.67881 * 2 1 4 4 C 1.53263 * 109.57704 * 120.32195 * 2 1 3 5 5 O 1.43091 * 108.94328 * 174.33097 * 4 2 1 6 6 C 1.42966 * 113.76817 * 302.02936 * 5 4 2 7 7 C 1.53007 * 109.46944 * 298.79237 * 6 5 4 8 8 C 1.50700 * 109.47166 * 178.79747 * 6 5 4 9 9 H 1.08004 * 119.99512 * 358.85765 * 8 6 5 10 10 C 1.37876 * 120.00198 * 178.86155 * 8 6 5 11 11 N 1.31516 * 119.99901 * 181.69348 * 10 8 6 12 12 Si 1.86791 * 120.00019 * 1.68571 * 10 8 6 13 13 H 1.48502 * 109.47490 * 270.00330 * 12 10 8 14 14 H 1.48500 * 109.47247 * 30.00355 * 12 10 8 15 15 H 1.48499 * 109.47290 * 150.00530 * 12 10 8 16 16 O 1.42969 * 109.47276 * 58.79354 * 6 5 4 17 17 C 1.43084 * 113.76991 * 301.20674 * 16 6 5 18 18 H 1.09005 * 109.47196 * 299.67858 * 1 2 3 19 19 H 1.09000 * 109.47226 * 59.67819 * 1 2 3 20 20 H 1.09007 * 109.47269 * 179.68092 * 1 2 3 21 21 H 1.09001 * 109.47343 * 180.32384 * 3 2 1 22 22 H 1.09005 * 109.47160 * 300.31683 * 3 2 1 23 23 H 1.08993 * 109.47520 * 60.32184 * 3 2 1 24 24 H 1.09000 * 109.55538 * 54.49026 * 4 2 1 25 25 H 1.08996 * 109.55284 * 294.17069 * 4 2 1 26 26 H 1.08998 * 109.47274 * 294.07888 * 7 6 5 27 27 H 1.08998 * 109.47062 * 54.08168 * 7 6 5 28 28 H 1.09005 * 109.46886 * 174.07643 * 7 6 5 29 29 H 0.97003 * 119.99845 * 354.89229 * 11 10 8 30 30 H 1.09005 * 109.56083 * 298.12937 * 17 16 6 31 31 H 1.08999 * 109.55833 * 177.81209 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0452 1.4406 0.0000 4 6 2.0435 -0.7290 1.2465 5 8 3.4681 -0.8376 1.1672 6 6 3.9298 -1.5217 -0.0001 7 6 3.3886 -2.9528 0.0000 8 6 5.4365 -1.5546 -0.0002 9 1 5.9869 -1.0827 0.8004 10 6 6.1122 -2.1868 -1.0222 11 7 7.4260 -2.2444 -1.0050 12 14 5.1618 -2.9619 -2.4311 13 1 4.8478 -4.3747 -2.0985 14 1 3.8985 -2.2119 -2.6478 15 1 5.9833 -2.9153 -3.6673 16 8 3.4680 -0.8376 -1.1674 17 6 2.0435 -0.7290 -1.2465 18 1 -0.3634 0.5089 0.8929 19 1 -0.3634 0.5188 -0.8871 20 1 -0.3634 -1.0277 -0.0057 21 1 3.1352 1.4367 -0.0058 22 1 1.6791 1.9574 -0.8872 23 1 1.6885 1.9541 0.8928 24 1 1.6037 -1.7252 1.2937 25 1 1.7695 -0.1648 2.1379 26 1 3.8240 -3.5059 0.8321 27 1 2.3040 -2.9311 0.1060 28 1 3.6521 -3.4410 -0.9384 29 1 7.9229 -1.7792 -0.3139 30 1 1.6036 -1.7252 -1.2937 31 1 1.7694 -0.1649 -2.1380 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260739778.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:16 Heat of formation + Delta-G solvation = -95.137790 kcal Electronic energy + Delta-G solvation = -14256.742657 eV Core-core repulsion = 11924.404542 eV Total energy + Delta-G solvation = -2332.338115 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.68555 -35.14434 -34.59416 -32.61111 -29.49298 -27.02137 -26.41808 -25.39705 -24.19547 -21.01082 -18.23158 -17.52846 -16.48156 -15.41965 -14.89246 -14.51624 -14.16453 -13.74349 -13.13491 -12.76063 -12.30514 -12.03154 -11.97196 -11.81601 -11.61057 -11.54660 -10.98160 -10.65828 -10.44968 -10.20905 -10.09254 -9.54243 -9.00161 -8.82445 -8.50318 -8.27465 -6.58417 -4.30053 3.39004 3.54626 3.75593 4.48935 4.70022 4.79662 4.95867 5.04251 5.30089 5.48241 5.60898 5.71695 5.79048 5.92684 6.03025 6.06631 6.08510 6.11199 6.15225 6.29518 6.37467 6.45019 6.47260 6.76120 6.88813 7.64099 8.10767 8.32215 8.41869 8.90328 9.46651 10.83987 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.050525 B = 0.014192 C = 0.013275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.048086 B = 1972.510118 C = 2108.672856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.136 4.136 3 C -0.127 4.127 4 C 0.063 3.937 5 O -0.380 6.380 6 C 0.360 3.640 7 C -0.198 4.198 8 C -0.570 4.570 9 H 0.072 0.928 10 C 0.045 3.955 11 N -0.895 5.895 12 Si 1.052 2.948 13 H -0.293 1.293 14 H -0.245 1.245 15 H -0.296 1.296 16 O -0.379 6.379 17 C 0.057 3.943 18 H 0.055 0.945 19 H 0.056 0.944 20 H 0.052 0.948 21 H 0.072 0.928 22 H 0.047 0.953 23 H 0.046 0.954 24 H 0.044 0.956 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.271 0.729 30 H 0.040 0.960 31 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.350 2.247 0.619 13.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.136 4.136 3 C -0.185 4.185 4 C -0.015 4.015 5 O -0.300 6.300 6 C 0.286 3.714 7 C -0.255 4.255 8 C -0.607 4.607 9 H 0.090 0.910 10 C -0.162 4.162 11 N -0.529 5.529 12 Si 0.881 3.119 13 H -0.222 1.222 14 H -0.169 1.169 15 H -0.224 1.224 16 O -0.300 6.300 17 C -0.021 4.021 18 H 0.074 0.926 19 H 0.075 0.925 20 H 0.071 0.929 21 H 0.091 0.909 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.901 1.514 -0.740 13.010 hybrid contribution -0.600 0.695 1.486 1.747 sum -13.501 2.208 0.747 13.700 Atomic orbital electron populations 1.21732 0.94463 1.01456 1.01686 1.21772 0.95597 0.97901 0.98364 1.21649 1.03017 0.93597 1.00198 1.22542 0.84257 0.98178 0.96475 1.88200 1.18190 1.78518 1.45108 1.20982 0.93883 0.83681 0.72881 1.23051 0.98979 1.00815 1.02693 1.21687 0.86407 1.40686 1.11901 0.90954 1.25874 0.96281 0.94735 0.99296 1.70856 1.06259 1.39841 1.35948 0.84167 0.76770 0.75428 0.75510 1.22180 1.16902 1.22383 1.88637 1.17404 1.78770 1.45226 1.22489 0.85512 0.97889 0.96161 0.92632 0.92534 0.92871 0.90927 0.93352 0.93500 0.93826 0.90180 0.91117 0.94281 0.92273 0.91925 0.94177 0.90382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.50 37.16 0.32 -1.39 16 2 C -0.14 -2.26 0.79 -154.24 -0.12 -2.38 16 3 C -0.13 -2.11 8.30 37.15 0.31 -1.80 16 4 C 0.06 1.15 5.28 37.29 0.20 1.35 16 5 O -0.38 -9.12 9.87 -59.03 -0.58 -9.70 16 6 C 0.36 9.12 1.04 -27.88 -0.03 9.09 16 7 C -0.20 -4.46 7.52 37.16 0.28 -4.18 16 8 C -0.57 -16.88 9.05 -34.44 -0.31 -17.19 16 9 H 0.07 2.32 8.04 -52.48 -0.42 1.89 16 10 C 0.04 1.33 5.44 -17.82 -0.10 1.23 16 11 N -0.90 -27.85 13.70 55.43 0.76 -27.09 16 12 Si 1.05 26.27 24.25 -169.99 -4.12 22.15 16 13 H -0.29 -6.92 6.88 56.52 0.39 -6.53 16 14 H -0.24 -5.73 5.25 56.52 0.30 -5.44 16 15 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 16 O -0.38 -9.23 6.76 -59.03 -0.40 -9.63 16 17 C 0.06 1.08 5.21 37.29 0.19 1.27 16 18 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 19 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 20 H 0.05 0.63 8.14 -51.92 -0.42 0.20 16 21 H 0.07 1.46 7.48 -51.93 -0.39 1.07 16 22 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.04 0.75 6.40 -51.93 -0.33 0.42 16 25 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 27 H 0.04 0.75 5.13 -51.93 -0.27 0.48 16 28 H 0.06 1.34 3.40 -51.93 -0.18 1.17 16 29 H 0.27 8.33 8.72 -40.82 -0.36 7.98 16 30 H 0.04 0.72 6.67 -51.93 -0.35 0.38 16 31 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 235.92 15.07 3.56 3.56 Total: -1.00 -31.57 235.92 -4.64 -36.21 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -4.58 Total: -1.50 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: 0.74 Total: -13.99 kcal Atomic # 7 Polarization: -27.85 SS G_CDS: 0.76 Total: -27.09 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.98 Total: -19.33 kcal Atomic # 14 Polarization: 26.27 SS G_CDS: -4.12 Total: 22.15 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -31.57 -4.64 -36.21 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260739778.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.926 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds