Wall clock time and date at job start Mon Mar 30 2020 03:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.67881 * 2 1 4 4 C 1.53263 * 109.57704 * 120.32195 * 2 1 3 5 5 O 1.43091 * 108.94328 * 174.33097 * 4 2 1 6 6 C 1.42966 * 113.76817 * 302.02936 * 5 4 2 7 7 C 1.53007 * 109.46944 * 298.79237 * 6 5 4 8 8 C 1.50700 * 109.47166 * 178.79747 * 6 5 4 9 9 H 1.08004 * 119.99512 * 358.85765 * 8 6 5 10 10 C 1.37876 * 120.00198 * 178.86155 * 8 6 5 11 11 N 1.31516 * 119.99901 * 181.69348 * 10 8 6 12 12 Si 1.86791 * 120.00019 * 1.68571 * 10 8 6 13 13 H 1.48502 * 109.47490 * 270.00330 * 12 10 8 14 14 H 1.48500 * 109.47247 * 30.00355 * 12 10 8 15 15 H 1.48499 * 109.47290 * 150.00530 * 12 10 8 16 16 O 1.42969 * 109.47276 * 58.79354 * 6 5 4 17 17 C 1.43084 * 113.76991 * 301.20674 * 16 6 5 18 18 H 1.09005 * 109.47196 * 299.67858 * 1 2 3 19 19 H 1.09000 * 109.47226 * 59.67819 * 1 2 3 20 20 H 1.09007 * 109.47269 * 179.68092 * 1 2 3 21 21 H 1.09001 * 109.47343 * 180.32384 * 3 2 1 22 22 H 1.09005 * 109.47160 * 300.31683 * 3 2 1 23 23 H 1.08993 * 109.47520 * 60.32184 * 3 2 1 24 24 H 1.09000 * 109.55538 * 54.49026 * 4 2 1 25 25 H 1.08996 * 109.55284 * 294.17069 * 4 2 1 26 26 H 1.08998 * 109.47274 * 294.07888 * 7 6 5 27 27 H 1.08998 * 109.47062 * 54.08168 * 7 6 5 28 28 H 1.09005 * 109.46886 * 174.07643 * 7 6 5 29 29 H 0.97003 * 119.99845 * 354.89229 * 11 10 8 30 30 H 1.09005 * 109.56083 * 298.12937 * 17 16 6 31 31 H 1.08999 * 109.55833 * 177.81209 * 17 16 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0452 1.4406 0.0000 4 6 2.0435 -0.7290 1.2465 5 8 3.4681 -0.8376 1.1672 6 6 3.9298 -1.5217 -0.0001 7 6 3.3886 -2.9528 0.0000 8 6 5.4365 -1.5546 -0.0002 9 1 5.9869 -1.0827 0.8004 10 6 6.1122 -2.1868 -1.0222 11 7 7.4260 -2.2444 -1.0050 12 14 5.1618 -2.9619 -2.4311 13 1 4.8478 -4.3747 -2.0985 14 1 3.8985 -2.2119 -2.6478 15 1 5.9833 -2.9153 -3.6673 16 8 3.4680 -0.8376 -1.1674 17 6 2.0435 -0.7290 -1.2465 18 1 -0.3634 0.5089 0.8929 19 1 -0.3634 0.5188 -0.8871 20 1 -0.3634 -1.0277 -0.0057 21 1 3.1352 1.4367 -0.0058 22 1 1.6791 1.9574 -0.8872 23 1 1.6885 1.9541 0.8928 24 1 1.6037 -1.7252 1.2937 25 1 1.7695 -0.1648 2.1379 26 1 3.8240 -3.5059 0.8321 27 1 2.3040 -2.9311 0.1060 28 1 3.6521 -3.4410 -0.9384 29 1 7.9229 -1.7792 -0.3139 30 1 1.6036 -1.7252 -1.2937 31 1 1.7694 -0.1649 -2.1380 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260739778.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:14 Heat of formation + Delta-G solvation = -117.916605 kcal Electronic energy + Delta-G solvation = -14257.730421 eV Core-core repulsion = 11924.404542 eV Total energy + Delta-G solvation = -2333.325878 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.31622 -36.68571 -36.33024 -34.74145 -31.35952 -28.39323 -27.80936 -26.88693 -26.06166 -22.82490 -20.09169 -19.25903 -18.29095 -17.12271 -16.35694 -16.11755 -15.74539 -15.54011 -14.66595 -14.39988 -14.30130 -13.68592 -13.48661 -13.09630 -13.01044 -12.94132 -12.71662 -12.26501 -11.97630 -11.73871 -11.68400 -11.30583 -11.06408 -10.83375 -10.33419 -10.04221 -8.93326 -6.66071 1.40292 1.56159 1.82439 2.43821 2.82519 3.11714 3.42710 3.67969 3.77064 4.03472 4.24124 4.37777 4.39682 4.48424 4.57333 4.60825 4.76927 4.82302 4.84916 4.97250 5.05644 5.14182 5.17110 5.30636 5.48592 5.66954 5.82223 6.25134 6.47937 6.82755 7.22936 8.48286 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.050525 B = 0.014192 C = 0.013275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.048086 B = 1972.510118 C = 2108.672856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.132 4.132 3 C -0.125 4.125 4 C 0.051 3.949 5 O -0.414 6.414 6 C 0.363 3.637 7 C -0.193 4.193 8 C -0.588 4.588 9 H 0.022 0.978 10 C -0.002 4.002 11 N -0.927 5.927 12 Si 1.089 2.911 13 H -0.267 1.267 14 H -0.217 1.217 15 H -0.301 1.301 16 O -0.407 6.407 17 C 0.042 3.958 18 H 0.071 0.929 19 H 0.072 0.928 20 H 0.065 0.935 21 H 0.024 0.976 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.255 0.745 30 H 0.058 0.942 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.111 1.863 -0.177 17.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.133 4.133 3 C -0.182 4.182 4 C -0.025 4.025 5 O -0.335 6.335 6 C 0.288 3.712 7 C -0.250 4.250 8 C -0.625 4.625 9 H 0.041 0.959 10 C -0.201 4.201 11 N -0.562 5.562 12 Si 0.911 3.089 13 H -0.194 1.194 14 H -0.140 1.140 15 H -0.229 1.229 16 O -0.329 6.329 17 C -0.034 4.034 18 H 0.090 0.910 19 H 0.091 0.909 20 H 0.084 0.916 21 H 0.043 0.957 22 H 0.085 0.915 23 H 0.084 0.916 24 H 0.078 0.922 25 H 0.118 0.882 26 H 0.082 0.918 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.684 1.140 -1.501 16.790 hybrid contribution 0.533 0.951 1.841 2.140 sum -16.151 2.091 0.340 16.289 Atomic orbital electron populations 1.21678 0.90552 1.02880 1.03360 1.21773 0.98532 0.96825 0.96163 1.21621 0.99899 0.94595 1.02111 1.22951 0.81246 0.99847 0.98500 1.88126 1.22066 1.78735 1.44612 1.20523 0.91457 0.85427 0.73757 1.22914 1.01296 0.98362 1.02472 1.21861 0.89892 1.40184 1.10565 0.95914 1.27355 0.96289 0.94911 1.01594 1.70963 1.07479 1.41528 1.36207 0.83791 0.76593 0.76385 0.72146 1.19372 1.14024 1.22925 1.88484 1.21112 1.78978 1.44291 1.22923 0.82493 0.99687 0.98317 0.91007 0.90945 0.91601 0.95684 0.91482 0.91634 0.92181 0.88158 0.91844 0.90483 0.92163 0.93574 0.92429 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.50 71.98 0.61 -1.88 16 2 C -0.13 -3.90 0.79 -52.01 -0.04 -3.94 16 3 C -0.12 -3.84 8.30 71.98 0.60 -3.25 16 4 C 0.05 1.71 5.28 72.07 0.38 2.09 16 5 O -0.41 -19.78 9.87 -126.22 -1.25 -21.03 16 6 C 0.36 18.23 1.04 29.85 0.03 18.26 16 7 C -0.19 -8.23 7.52 71.98 0.54 -7.69 16 8 C -0.59 -36.21 9.05 25.60 0.23 -35.97 16 9 H 0.02 1.56 8.04 -2.91 -0.02 1.54 16 10 C 0.00 -0.13 5.44 84.65 0.46 0.33 16 11 N -0.93 -60.04 13.70 21.45 0.29 -59.74 16 12 Si 1.09 52.24 24.25 68.60 1.66 53.90 16 13 H -0.27 -11.62 6.88 99.48 0.68 -10.93 16 14 H -0.22 -9.41 5.25 99.48 0.52 -8.89 16 15 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 16 O -0.41 -19.13 6.76 -126.22 -0.85 -19.98 16 17 C 0.04 1.43 5.21 72.07 0.38 1.81 16 18 H 0.07 1.20 8.14 -2.38 -0.02 1.19 16 19 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 20 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 21 H 0.02 0.98 7.48 -2.39 -0.02 0.97 16 22 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 23 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.06 1.81 6.40 -2.39 -0.02 1.80 16 25 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 26 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.08 2.65 5.13 -2.39 -0.01 2.63 16 28 H 0.06 2.54 3.40 -2.38 -0.01 2.53 16 29 H 0.26 16.75 8.72 -92.71 -0.81 15.94 16 30 H 0.06 1.76 6.67 -2.38 -0.02 1.75 16 31 H 0.10 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -72.00 235.92 3.90 -68.09 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 0.86 Total: 9.00 kcal Atomic # 6 Polarization: -33.42 SS G_CDS: 3.19 Total: -30.24 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: 0.29 Total: -59.74 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -2.10 Total: -41.01 kcal Atomic # 14 Polarization: 52.24 SS G_CDS: 1.66 Total: 53.90 kcal Total: -72.00 3.90 -68.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260739778.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.826 kcal (2) G-P(sol) polarization free energy of solvation -71.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds