Wall clock time and date at job start Mon Mar 30 2020 02:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38434 * 119.99779 * 2 1 4 4 C 1.38301 * 120.07809 * 179.97438 * 3 2 1 5 5 C 1.37987 * 120.28998 * 0.02562 * 4 3 2 6 6 C 1.39510 * 119.95071 * 359.97438 * 5 4 3 7 7 C 1.37723 * 120.00151 * 179.71775 * 2 1 3 8 8 C 1.50915 * 132.63481 * 0.65854 * 7 2 1 9 9 C 1.51050 * 105.85659 * 179.52540 * 8 7 2 10 10 C 1.35865 * 107.77613 * 359.78786 * 9 8 7 11 11 C 1.40938 * 124.85880 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00209 * 179.97438 * 11 10 9 13 13 C 1.40020 * 119.99862 * 359.97438 * 11 10 9 14 14 N 1.30788 * 120.00488 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 119.99935 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46628 * 90.00217 * 15 13 11 17 17 H 1.48495 * 109.47406 * 210.00233 * 15 13 11 18 18 H 1.48496 * 109.47137 * 330.00577 * 15 13 11 19 19 H 1.09002 * 109.47152 * 90.00351 * 1 2 3 20 20 H 1.09001 * 109.46980 * 330.00451 * 1 2 3 21 21 H 1.09004 * 109.47113 * 210.00432 * 1 2 3 22 22 H 1.07994 * 119.96297 * 359.94589 * 3 2 1 23 23 H 1.07993 * 119.85630 * 179.97438 * 4 3 2 24 24 H 1.07996 * 120.02643 * 179.97438 * 5 4 3 25 25 H 1.09000 * 110.34959 * 60.33361 * 8 7 2 26 26 H 1.09002 * 109.99796 * 298.52836 * 8 7 2 27 27 H 1.08005 * 126.11179 * 179.81492 * 9 8 7 28 28 H 0.97001 * 120.00361 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1989 0.0000 4 6 3.5822 1.2008 0.0005 5 6 4.2798 0.0103 0.0005 6 6 3.5890 -1.2018 0.0005 7 6 2.1957 -1.1927 0.0059 8 6 1.7454 -2.6331 0.0002 9 6 3.0090 -3.4606 0.0001 10 6 4.0648 -2.6054 0.0003 11 6 5.4187 -2.9971 -0.0003 12 1 6.1974 -2.2487 -0.0005 13 6 5.7542 -4.3565 -0.0006 14 7 4.8113 -5.2629 -0.0008 15 14 7.5487 -4.8757 -0.0021 16 1 8.0252 -5.0133 1.3977 17 1 7.6867 -6.1779 -0.7022 18 1 8.3606 -3.8485 -0.7026 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3633 0.8900 0.5138 21 1 -0.3633 -0.8900 0.5139 22 1 1.6585 2.1338 -0.0009 23 1 4.1185 2.1382 0.0001 24 1 5.3597 0.0168 0.0005 25 1 1.1583 -2.8432 -0.8939 26 1 1.1583 -2.8436 0.8942 27 1 3.0636 -4.5392 -0.0005 28 1 5.0437 -6.2046 -0.0014 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260909440.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:30 Heat of formation + Delta-G solvation = 26.510650 kcal Electronic energy + Delta-G solvation = -11992.754709 eV Core-core repulsion = 9973.000586 eV Total energy + Delta-G solvation = -2019.754123 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 200.090 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.18273 -35.20098 -32.88507 -32.16650 -28.08708 -27.54690 -25.72483 -23.95907 -20.43391 -20.08160 -18.65994 -16.23942 -15.10021 -14.66046 -14.40281 -13.76465 -13.68371 -12.92544 -12.47100 -12.33744 -11.70850 -11.59151 -11.24397 -11.21758 -11.07202 -10.62430 -10.24031 -9.99821 -9.69378 -9.56513 -9.39578 -8.38017 -7.78473 -6.77593 -6.34389 -4.22257 2.05409 2.19465 3.07837 3.16961 3.21063 3.98183 4.09145 4.70365 5.39638 5.52194 5.64565 5.65723 5.80480 5.99416 6.03199 6.18452 6.27074 6.46912 6.55268 6.82155 6.83873 6.91898 7.15451 7.22677 7.29871 7.45596 7.71482 7.88380 8.09693 8.53113 9.04916 9.18553 9.27357 10.48599 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.053279 B = 0.010044 C = 0.008504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.408847 B = 2787.047610 C = 3291.960919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.082 4.082 3 C -0.150 4.150 4 C -0.128 4.128 5 C -0.123 4.123 6 C -0.028 4.028 7 C -0.111 4.111 8 C -0.038 4.038 9 C -0.319 4.319 10 C 0.037 3.963 11 C -0.429 4.429 12 H 0.066 0.934 13 C 0.056 3.944 14 N -0.809 5.809 15 Si 0.913 3.087 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.266 1.266 19 H 0.061 0.939 20 H 0.056 0.944 21 H 0.062 0.938 22 H 0.109 0.891 23 H 0.110 0.890 24 H 0.112 0.888 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.170 0.830 28 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.524 6.116 -0.017 7.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.082 4.082 3 C -0.168 4.168 4 C -0.146 4.146 5 C -0.141 4.141 6 C -0.028 4.028 7 C -0.111 4.111 8 C -0.075 4.075 9 C -0.342 4.342 10 C 0.036 3.964 11 C -0.461 4.461 12 H 0.084 0.916 13 C -0.155 4.155 14 N -0.438 5.438 15 Si 0.739 3.261 16 H -0.199 1.199 17 H -0.205 1.205 18 H -0.190 1.190 19 H 0.080 0.920 20 H 0.075 0.925 21 H 0.081 0.919 22 H 0.128 0.872 23 H 0.128 0.872 24 H 0.131 0.869 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.187 0.813 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.520 5.881 -0.022 6.853 hybrid contribution 0.908 -0.100 0.001 0.913 sum -2.612 5.780 -0.020 6.343 Atomic orbital electron populations 1.20673 0.92310 1.01824 1.01466 1.19110 0.95061 0.92053 1.01966 1.20689 0.94109 0.96358 1.05668 1.20784 0.94106 0.97148 1.02592 1.20841 0.99446 0.91524 1.02260 1.20488 0.93403 0.94748 0.94185 1.20652 0.95012 0.95052 1.00389 1.19727 0.99653 0.89242 0.98841 1.24532 0.89214 1.00023 1.20450 1.17876 0.94161 0.86727 0.97663 1.19099 0.92098 0.91699 1.43162 0.91603 1.25700 0.98998 0.96427 0.94417 1.69548 1.33070 1.01668 1.39509 0.86229 0.82736 0.78339 0.78812 1.19862 1.20490 1.19043 0.91996 0.92466 0.91914 0.87246 0.87224 0.86944 0.92295 0.92361 0.81294 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 9.92 36.01 0.36 -1.25 15 2 C -0.08 -1.58 5.87 -104.74 -0.61 -2.19 15 3 C -0.15 -2.69 9.71 -39.49 -0.38 -3.08 15 4 C -0.13 -2.38 10.02 -39.65 -0.40 -2.78 15 5 C -0.12 -2.67 10.04 -39.20 -0.39 -3.07 15 6 C -0.03 -0.70 6.15 -104.92 -0.64 -1.35 15 7 C -0.11 -2.52 6.12 -104.30 -0.64 -3.16 15 8 C -0.04 -0.88 6.28 -28.76 -0.18 -1.06 15 9 C -0.32 -8.60 10.07 -34.99 -0.35 -8.96 15 10 C 0.04 1.04 5.92 -105.63 -0.63 0.41 15 11 C -0.43 -11.96 9.34 -37.89 -0.35 -12.32 15 12 H 0.07 1.76 7.85 -52.49 -0.41 1.35 15 13 C 0.06 1.50 5.49 -17.33 -0.10 1.40 15 14 N -0.81 -21.88 10.11 55.55 0.56 -21.32 15 15 Si 0.91 19.86 29.56 -169.99 -5.02 14.83 15 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 17 H -0.28 -5.94 7.11 56.52 0.40 -5.54 15 18 H -0.27 -5.71 7.11 56.52 0.40 -5.31 15 19 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 20 H 0.06 0.74 8.09 -51.93 -0.42 0.32 15 21 H 0.06 0.93 7.80 -51.93 -0.40 0.53 15 22 H 0.11 1.61 8.06 -52.49 -0.42 1.19 15 23 H 0.11 1.68 8.06 -52.49 -0.42 1.25 15 24 H 0.11 2.33 8.06 -52.49 -0.42 1.91 15 25 H 0.06 1.27 8.14 -51.93 -0.42 0.84 15 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 15 27 H 0.17 4.79 5.40 -52.48 -0.28 4.50 15 28 H 0.27 6.72 8.30 -40.82 -0.34 6.38 15 LS Contribution 241.95 15.07 3.65 3.65 Total: -1.00 -28.68 241.95 -8.33 -37.01 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -3.19 Total: 3.23 kcal Atomic # 6 Polarization: -33.07 SS G_CDS: -4.32 Total: -37.40 kcal Atomic # 7 Polarization: -21.88 SS G_CDS: 0.56 Total: -21.32 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.68 -8.33 -37.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260909440.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.520 kcal (2) G-P(sol) polarization free energy of solvation -28.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds