Wall clock time and date at job start Mon Mar 30 2020 02:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38434 * 119.99779 * 2 1 4 4 C 1.38301 * 120.07809 * 179.97438 * 3 2 1 5 5 C 1.37987 * 120.28998 * 0.02562 * 4 3 2 6 6 C 1.39510 * 119.95071 * 359.97438 * 5 4 3 7 7 C 1.37723 * 120.00151 * 179.71775 * 2 1 3 8 8 C 1.50915 * 132.63481 * 0.65854 * 7 2 1 9 9 C 1.51050 * 105.85659 * 179.52540 * 8 7 2 10 10 C 1.35865 * 107.77613 * 359.78786 * 9 8 7 11 11 C 1.40938 * 124.85880 * 180.02562 * 10 9 8 12 12 H 1.08001 * 120.00209 * 179.97438 * 11 10 9 13 13 C 1.40020 * 119.99862 * 359.97438 * 11 10 9 14 14 N 1.30788 * 120.00488 * 0.02562 * 13 11 10 15 15 Si 1.86809 * 119.99935 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46628 * 90.00217 * 15 13 11 17 17 H 1.48495 * 109.47406 * 210.00233 * 15 13 11 18 18 H 1.48496 * 109.47137 * 330.00577 * 15 13 11 19 19 H 1.09002 * 109.47152 * 90.00351 * 1 2 3 20 20 H 1.09001 * 109.46980 * 330.00451 * 1 2 3 21 21 H 1.09004 * 109.47113 * 210.00432 * 1 2 3 22 22 H 1.07994 * 119.96297 * 359.94589 * 3 2 1 23 23 H 1.07993 * 119.85630 * 179.97438 * 4 3 2 24 24 H 1.07996 * 120.02643 * 179.97438 * 5 4 3 25 25 H 1.09000 * 110.34959 * 60.33361 * 8 7 2 26 26 H 1.09002 * 109.99796 * 298.52836 * 8 7 2 27 27 H 1.08005 * 126.11179 * 179.81492 * 9 8 7 28 28 H 0.97001 * 120.00361 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1992 1.1989 0.0000 4 6 3.5822 1.2008 0.0005 5 6 4.2798 0.0103 0.0005 6 6 3.5890 -1.2018 0.0005 7 6 2.1957 -1.1927 0.0059 8 6 1.7454 -2.6331 0.0002 9 6 3.0090 -3.4606 0.0001 10 6 4.0648 -2.6054 0.0003 11 6 5.4187 -2.9971 -0.0003 12 1 6.1974 -2.2487 -0.0005 13 6 5.7542 -4.3565 -0.0006 14 7 4.8113 -5.2629 -0.0008 15 14 7.5487 -4.8757 -0.0021 16 1 8.0252 -5.0133 1.3977 17 1 7.6867 -6.1779 -0.7022 18 1 8.3606 -3.8485 -0.7026 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3633 0.8900 0.5138 21 1 -0.3633 -0.8900 0.5139 22 1 1.6585 2.1338 -0.0009 23 1 4.1185 2.1382 0.0001 24 1 5.3597 0.0168 0.0005 25 1 1.1583 -2.8432 -0.8939 26 1 1.1583 -2.8436 0.8942 27 1 3.0636 -4.5392 -0.0005 28 1 5.0437 -6.2046 -0.0014 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260909440.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:30 Heat of formation + Delta-G solvation = 11.786112 kcal Electronic energy + Delta-G solvation = -11993.393213 eV Core-core repulsion = 9973.000586 eV Total energy + Delta-G solvation = -2020.392627 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 200.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.83235 -36.98415 -34.78468 -33.67308 -29.98684 -29.19529 -27.18478 -25.87214 -22.08625 -21.67942 -20.62405 -18.06452 -17.06131 -16.27907 -15.96641 -15.35820 -15.26703 -14.62743 -13.93323 -13.85538 -13.37684 -13.04321 -13.01606 -12.93841 -12.61231 -12.25734 -12.17787 -11.65067 -11.47129 -11.42319 -11.34305 -10.17946 -9.34248 -8.65076 -8.33401 -6.33316 0.40307 0.61745 1.34353 1.36838 1.50793 2.14025 2.24765 2.93939 3.64916 3.89633 4.16917 4.23266 4.29147 4.55167 4.62071 4.83649 4.86676 4.98942 5.04013 5.06913 5.11294 5.29582 5.36624 5.55357 5.69543 5.71448 5.99748 6.01721 6.32853 6.50905 6.97696 7.13915 7.24141 8.50046 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.053279 B = 0.010044 C = 0.008504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.408847 B = 2787.047610 C = 3291.960919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.084 4.084 3 C -0.137 4.137 4 C -0.120 4.120 5 C -0.140 4.140 6 C -0.077 4.077 7 C -0.129 4.129 8 C -0.029 4.029 9 C -0.357 4.357 10 C 0.011 3.989 11 C -0.469 4.469 12 H 0.063 0.937 13 C 0.011 3.989 14 N -0.836 5.836 15 Si 0.989 3.011 16 H -0.265 1.265 17 H -0.268 1.268 18 H -0.261 1.261 19 H 0.077 0.923 20 H 0.088 0.912 21 H 0.060 0.940 22 H 0.157 0.843 23 H 0.150 0.850 24 H 0.109 0.891 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.149 0.851 28 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.969 8.331 -0.023 9.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.084 4.084 3 C -0.154 4.154 4 C -0.138 4.138 5 C -0.158 4.158 6 C -0.077 4.077 7 C -0.129 4.129 8 C -0.065 4.065 9 C -0.380 4.380 10 C 0.010 3.990 11 C -0.500 4.500 12 H 0.082 0.918 13 C -0.199 4.199 14 N -0.465 5.465 15 Si 0.810 3.190 16 H -0.190 1.190 17 H -0.192 1.192 18 H -0.185 1.185 19 H 0.095 0.905 20 H 0.106 0.894 21 H 0.079 0.921 22 H 0.174 0.826 23 H 0.167 0.833 24 H 0.127 0.873 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.166 0.834 28 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.989 8.101 -0.027 9.030 hybrid contribution 0.996 -0.693 0.004 1.214 sum -2.993 7.408 -0.023 7.989 Atomic orbital electron populations 1.20749 0.89119 1.03316 1.02877 1.19631 0.97487 0.91111 1.00157 1.21274 0.93990 0.97628 1.02554 1.21226 0.94884 0.97244 1.00441 1.21019 0.99655 0.91987 1.03126 1.20572 0.94984 0.94378 0.97788 1.20799 0.94416 0.95863 1.01821 1.19555 0.97892 0.89503 0.99566 1.24550 0.91557 0.99635 1.22229 1.18394 0.94429 0.89163 0.97053 1.19446 0.92605 0.92779 1.45200 0.91834 1.26697 1.03981 0.95958 0.93235 1.69684 1.35273 1.02218 1.39296 0.85095 0.76510 0.78183 0.79189 1.18976 1.19240 1.18548 0.90467 0.89370 0.92133 0.82581 0.83251 0.87292 0.91398 0.91465 0.83439 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.74 9.92 71.24 0.71 -2.03 15 2 C -0.08 -2.99 5.87 -19.94 -0.12 -3.11 15 3 C -0.14 -4.29 9.71 22.33 0.22 -4.07 15 4 C -0.12 -4.08 10.02 22.23 0.22 -3.86 15 5 C -0.14 -6.08 10.04 22.52 0.23 -5.85 15 6 C -0.08 -3.94 6.15 -20.05 -0.12 -4.06 15 7 C -0.13 -5.85 6.12 -19.65 -0.12 -5.97 15 8 C -0.03 -1.37 6.28 29.28 0.18 -1.18 15 9 C -0.36 -20.36 10.07 25.25 0.25 -20.11 15 10 C 0.01 0.65 5.92 -20.52 -0.12 0.53 15 11 C -0.47 -27.46 9.34 23.36 0.22 -27.25 15 12 H 0.06 3.57 7.85 -2.91 -0.02 3.55 15 13 C 0.01 0.58 5.49 85.28 0.47 1.05 15 14 N -0.84 -47.10 10.11 21.84 0.22 -46.88 15 15 Si 0.99 41.50 29.56 68.60 2.03 43.53 15 16 H -0.26 -10.70 7.11 99.48 0.71 -9.99 15 17 H -0.27 -10.64 7.11 99.48 0.71 -9.93 15 18 H -0.26 -10.67 7.11 99.48 0.71 -9.96 15 19 H 0.08 1.83 8.14 -2.39 -0.02 1.81 15 20 H 0.09 1.79 8.09 -2.39 -0.02 1.77 15 21 H 0.06 1.63 7.80 -2.38 -0.02 1.61 15 22 H 0.16 3.50 8.06 -2.91 -0.02 3.47 15 23 H 0.15 3.85 8.06 -2.91 -0.02 3.82 15 24 H 0.11 4.63 8.06 -2.91 -0.02 4.60 15 25 H 0.07 2.98 8.14 -2.39 -0.02 2.96 15 26 H 0.07 2.95 8.14 -2.39 -0.02 2.93 15 27 H 0.15 8.94 5.40 -2.91 -0.02 8.93 15 28 H 0.28 14.23 8.30 -92.71 -0.77 13.46 15 Total: -1.00 -65.64 241.95 5.41 -60.23 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 1.15 Total: 19.03 kcal Atomic # 6 Polarization: -77.92 SS G_CDS: 2.01 Total: -75.91 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.22 Total: -46.88 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -65.64 5.41 -60.23 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260909440.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.019 kcal (2) G-P(sol) polarization free energy of solvation -65.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds