Wall clock time and date at job start Mon Mar 30 2020 01:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46828 * 2 1 4 4 C 1.50700 * 109.47275 * 240.00552 * 2 1 3 5 5 H 1.07999 * 120.00247 * 245.46358 * 4 2 1 6 6 C 1.37882 * 120.00009 * 65.45668 * 4 2 1 7 7 N 1.31518 * 119.99731 * 9.58293 * 6 4 2 8 8 Si 1.86796 * 120.00231 * 189.57962 * 6 4 2 9 9 H 1.48502 * 109.47202 * 84.99520 * 8 6 4 10 10 H 1.48502 * 109.47279 * 204.99991 * 8 6 4 11 11 H 1.48506 * 109.47069 * 324.99544 * 8 6 4 12 12 N 1.46493 * 109.47394 * 120.00604 * 2 1 3 13 13 C 1.37046 * 126.40924 * 60.00040 * 12 2 1 14 14 C 1.34604 * 106.83586 * 179.97438 * 13 12 2 15 15 N 1.34198 * 108.05193 * 359.97438 * 14 13 12 16 16 C 1.30628 * 109.25934 * 0.02562 * 15 14 13 17 17 Cl 1.73592 * 125.66681 * 179.97438 * 16 15 14 18 18 H 1.08996 * 109.47298 * 303.41205 * 1 2 3 19 19 H 1.09001 * 109.47315 * 63.42252 * 1 2 3 20 20 H 1.09003 * 109.46828 * 183.41824 * 1 2 3 21 21 H 0.97003 * 119.99627 * 179.97438 * 7 6 4 22 22 H 1.07996 * 126.57985 * 359.95921 * 13 12 2 23 23 H 1.07999 * 125.97638 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5786 -1.6370 -1.1340 6 6 1.7946 -0.1771 -2.4797 7 7 1.2996 1.0360 -2.5934 8 14 2.1754 -1.1778 -4.0103 9 1 1.0231 -2.0605 -4.3241 10 1 2.4223 -0.2612 -5.1523 11 1 3.3838 -2.0075 -3.7713 12 7 2.0184 -0.6907 1.1960 13 6 1.7696 -1.9933 1.5417 14 6 2.4055 -2.2157 2.7070 15 7 3.0267 -1.0812 3.0648 16 6 2.7991 -0.1628 2.1642 17 17 3.3997 1.4654 2.2048 18 1 -0.3634 0.5659 0.8578 19 1 -0.3634 0.4598 -0.9191 20 1 -0.3633 -1.0259 0.0613 21 1 1.1327 1.4112 -3.4723 22 1 1.1770 -2.7047 0.9858 23 1 2.4142 -3.1446 3.2578 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260911858.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:55 Heat of formation + Delta-G solvation = 29.973113 kcal Electronic energy + Delta-G solvation = -10806.244947 eV Core-core repulsion = 8680.667774 eV Total energy + Delta-G solvation = -2125.577172 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.041 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.87285 -37.80691 -36.79510 -34.03947 -30.76615 -30.07487 -27.40174 -24.10121 -22.27043 -21.56510 -18.76703 -18.13195 -16.51216 -16.26028 -15.53476 -15.27256 -14.68551 -14.32216 -13.88288 -13.23147 -13.01469 -12.79013 -12.69900 -12.53369 -12.36526 -12.13820 -11.51369 -11.04790 -10.64559 -10.43241 -9.27537 -8.32565 -6.46153 0.53763 1.13615 1.41044 1.43246 1.51932 2.10034 2.23720 2.42668 2.99848 3.98994 4.28457 4.58926 4.63874 4.73338 4.75158 5.09549 5.35918 5.57426 5.60576 5.78068 5.95804 6.14977 6.61804 6.98222 7.24334 8.75118 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.041229 B = 0.012184 C = 0.010983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.971875 B = 2297.468819 C = 2548.759262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.247 3.753 3 H 0.047 0.953 4 C -0.554 4.554 5 H 0.059 0.941 6 C 0.032 3.968 7 N -0.907 5.907 8 Si 0.964 3.036 9 H -0.266 1.266 10 H -0.282 1.282 11 H -0.274 1.274 12 N -0.419 5.419 13 C -0.030 4.030 14 C -0.042 4.042 15 N -0.503 5.503 16 C 0.205 3.795 17 Cl 0.022 6.978 18 H 0.034 0.966 19 H 0.068 0.932 20 H 0.054 0.946 21 H 0.271 0.729 22 H 0.195 0.805 23 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.698 -3.398 4.207 5.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.147 3.853 3 H 0.065 0.935 4 C -0.592 4.592 5 H 0.077 0.923 6 C -0.170 4.170 7 N -0.544 5.544 8 Si 0.789 3.211 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.198 1.198 12 N -0.102 5.102 13 C -0.166 4.166 14 C -0.191 4.191 15 N -0.227 5.227 16 C -0.081 4.081 17 Cl 0.049 6.951 18 H 0.054 0.946 19 H 0.087 0.913 20 H 0.073 0.927 21 H 0.081 0.919 22 H 0.212 0.788 23 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -0.291 -2.865 4.627 5.450 hybrid contribution -0.185 -0.006 -1.603 1.614 sum -0.476 -2.871 3.023 4.196 Atomic orbital electron populations 1.21880 0.95264 1.00896 1.00890 1.19311 0.93117 0.93241 0.79659 0.93522 1.21330 1.38206 1.09020 0.90602 0.92266 1.25598 0.94264 0.95440 1.01697 1.70025 1.44028 1.14761 1.25575 0.85467 0.78878 0.78528 0.78219 1.19125 1.20733 1.19848 1.46133 1.34847 1.10965 1.18213 1.23128 1.07250 0.86249 0.99957 1.22751 1.01535 0.97697 0.97077 1.70084 1.25048 1.00560 1.27002 1.23198 1.02449 0.91071 0.91367 1.98345 1.86057 1.12736 1.97956 0.94645 0.91332 0.92678 0.91946 0.78812 0.77521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.65 9.17 71.98 0.66 -4.99 14 2 C 0.25 11.73 2.81 44.25 0.12 11.85 14 3 H 0.05 2.44 7.21 -2.39 -0.02 2.42 14 4 C -0.55 -28.22 8.46 25.60 0.22 -28.01 14 5 H 0.06 3.06 7.70 -2.91 -0.02 3.03 14 6 C 0.03 1.64 5.17 84.66 0.44 2.08 14 7 N -0.91 -47.92 12.16 21.45 0.26 -47.66 14 8 Si 0.96 40.38 29.55 68.60 2.03 42.41 14 9 H -0.27 -10.69 7.11 99.48 0.71 -9.98 14 10 H -0.28 -11.65 7.11 99.48 0.71 -10.94 14 11 H -0.27 -11.45 7.11 99.48 0.71 -10.74 14 12 N -0.42 -18.15 2.60 -499.23 -1.30 -19.45 14 13 C -0.03 -1.09 10.57 83.05 0.88 -0.22 14 14 C -0.04 -1.45 11.86 83.50 0.99 -0.46 14 15 N -0.50 -20.56 11.26 -191.04 -2.15 -22.71 14 16 C 0.20 8.76 8.51 180.20 1.53 10.29 14 17 Cl 0.02 0.84 28.43 -2.72 -0.08 0.76 14 18 H 0.03 1.40 8.14 -2.39 -0.02 1.38 14 19 H 0.07 3.21 6.84 -2.39 -0.02 3.19 14 20 H 0.05 2.18 7.85 -2.39 -0.02 2.16 14 21 H 0.27 13.57 8.31 -92.71 -0.77 12.80 14 22 H 0.19 6.08 8.06 -2.91 -0.02 6.06 14 23 H 0.21 5.25 8.06 -2.91 -0.02 5.23 14 Total: -1.00 -56.31 224.05 4.81 -51.50 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: 1.21 Total: 4.61 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 4.84 Total: -9.46 kcal Atomic # 7 Polarization: -86.63 SS G_CDS: -3.19 Total: -89.82 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Atomic # 17 Polarization: 0.84 SS G_CDS: -0.08 Total: 0.76 kcal Total: -56.31 4.81 -51.50 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260911858.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.469 kcal (2) G-P(sol) polarization free energy of solvation -56.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds