Wall clock time and date at job start Mon Mar 30 2020 01:57:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46726 * 2 1 4 4 C 1.50693 * 109.47038 * 119.99690 * 2 1 3 5 5 H 1.08002 * 120.00045 * 114.36160 * 4 2 1 6 6 C 1.37876 * 120.00407 * 294.36399 * 4 2 1 7 7 N 1.31506 * 120.00538 * 156.88335 * 6 4 2 8 8 Si 1.86814 * 119.99546 * 336.88133 * 6 4 2 9 9 H 1.48500 * 109.46954 * 179.97438 * 8 6 4 10 10 H 1.48497 * 109.46879 * 299.99863 * 8 6 4 11 11 H 1.48493 * 109.46804 * 60.00033 * 8 6 4 12 12 N 1.46497 * 109.47053 * 240.00016 * 2 1 3 13 13 N 1.40080 * 126.03511 * 300.02282 * 12 2 1 14 14 C 1.30840 * 108.23561 * 180.02562 * 13 12 2 15 15 C 1.39854 * 108.21862 * 359.97438 * 14 13 12 16 16 C 1.34987 * 126.03561 * 119.71816 * 12 2 1 17 17 Cl 1.73599 * 126.14293 * 359.97438 * 16 12 2 18 18 H 1.09002 * 109.47128 * 53.16722 * 1 2 3 19 19 H 1.09001 * 109.47164 * 173.15998 * 1 2 3 20 20 H 1.08994 * 109.47265 * 293.15971 * 1 2 3 21 21 H 0.97002 * 119.99782 * 354.92737 * 7 6 4 22 22 H 1.08001 * 125.88668 * 179.97438 * 14 13 12 23 23 H 1.08008 * 126.04833 * 179.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5761 -1.6385 1.1340 6 6 1.7977 -0.1754 2.4794 7 7 1.8079 -0.9526 3.5402 8 14 1.4655 1.6536 2.6647 9 1 1.2455 1.9740 4.0979 10 1 2.6309 2.4221 2.1583 11 1 0.2554 2.0183 1.8851 12 7 2.0183 -0.6906 -1.1962 13 7 1.7586 -2.0229 -1.5422 14 6 2.3630 -2.2771 -2.6745 15 6 3.0260 -1.1166 -3.0864 16 6 2.7932 -0.1538 -2.1623 17 17 3.3880 1.4764 -2.2100 18 1 -0.3633 0.6161 -0.8225 19 1 -0.3633 -1.0204 -0.1224 20 1 -0.3633 0.4041 0.9448 21 1 1.9070 -1.9121 3.4375 22 1 2.3518 -3.2204 -3.2003 23 1 3.6160 -1.0064 -3.9843 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260936333.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:49 Heat of formation + Delta-G solvation = 65.160303 kcal Electronic energy + Delta-G solvation = -10822.192719 eV Core-core repulsion = 8698.141378 eV Total energy + Delta-G solvation = -2124.051341 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.041 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.56538 -36.41415 -34.75879 -32.00520 -29.57694 -28.69760 -24.98817 -22.30385 -20.66657 -19.60957 -17.59609 -16.62569 -14.66512 -14.18695 -13.92724 -13.54756 -13.03070 -12.69892 -12.21422 -11.85389 -11.61941 -11.42420 -11.06464 -10.68416 -10.31556 -10.04529 -9.92764 -9.33592 -8.67692 -8.37979 -8.04782 -6.67501 -4.28987 2.00097 2.36765 3.22775 3.24385 3.31296 3.39045 3.53975 4.31980 4.94523 5.22700 5.76224 5.93943 6.08624 6.24146 6.28302 6.36287 6.60945 6.94282 7.18862 7.51929 7.64869 8.22028 8.28694 8.74114 9.36753 10.69807 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.038826 B = 0.014209 C = 0.011776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 720.987415 B = 1970.057153 C = 2377.234035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.253 3.747 3 H 0.053 0.947 4 C -0.618 4.618 5 H 0.069 0.931 6 C 0.046 3.954 7 N -0.883 5.883 8 Si 1.025 2.975 9 H -0.277 1.277 10 H -0.277 1.277 11 H -0.273 1.273 12 N -0.310 5.310 13 N -0.258 5.258 14 C 0.021 3.979 15 C -0.272 4.272 16 C 0.117 3.883 17 Cl -0.023 7.023 18 H 0.029 0.971 19 H 0.061 0.939 20 H 0.071 0.929 21 H 0.274 0.726 22 H 0.181 0.819 23 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.722 3.706 -10.682 11.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.154 3.846 3 H 0.070 0.930 4 C -0.655 4.655 5 H 0.087 0.913 6 C -0.162 4.162 7 N -0.514 5.514 8 Si 0.851 3.149 9 H -0.202 1.202 10 H -0.203 1.203 11 H -0.199 1.199 12 N -0.093 5.093 13 N -0.082 5.082 14 C -0.162 4.162 15 C -0.303 4.303 16 C -0.040 4.040 17 Cl 0.005 6.995 18 H 0.048 0.952 19 H 0.080 0.920 20 H 0.089 0.911 21 H 0.084 0.916 22 H 0.198 0.802 23 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.284 4.632 -8.453 9.643 hybrid contribution 0.959 -0.738 -1.785 2.157 sum 0.676 3.894 -10.238 10.974 Atomic orbital electron populations 1.22434 0.96697 1.01778 1.00570 1.19644 0.92191 0.92188 0.80603 0.92962 1.21990 1.42178 1.11547 0.89800 0.91251 1.25648 0.93195 1.05857 0.91535 1.70818 1.42159 1.06815 1.31592 0.84323 0.77611 0.75797 0.77194 1.20168 1.20299 1.19910 1.49536 1.35196 1.07402 1.17178 1.77560 1.22835 0.93099 1.14726 1.23639 0.98589 0.99131 0.94845 1.20931 1.13006 0.92746 1.03654 1.21745 1.00239 0.87921 0.94078 1.98352 1.86108 1.17157 1.97922 0.95234 0.91960 0.91061 0.91552 0.80241 0.83603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 9.18 37.16 0.34 -3.16 14 2 C 0.25 6.14 2.65 -69.09 -0.18 5.96 14 3 H 0.05 1.23 5.84 -51.93 -0.30 0.93 14 4 C -0.62 -17.34 8.98 -34.44 -0.31 -17.65 14 5 H 0.07 2.18 8.06 -52.49 -0.42 1.76 14 6 C 0.05 1.29 5.20 -17.82 -0.09 1.20 14 7 N -0.88 -26.30 13.70 55.43 0.76 -25.54 14 8 Si 1.02 23.71 26.44 -169.99 -4.50 19.21 14 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 14 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 14 11 H -0.27 -5.76 6.15 56.52 0.35 -5.42 14 12 N -0.31 -7.10 3.27 -52.81 -0.17 -7.27 14 13 N -0.26 -5.77 12.39 30.62 0.38 -5.39 14 14 C 0.02 0.38 12.02 -17.37 -0.21 0.18 14 15 C -0.27 -4.71 10.79 -39.97 -0.43 -5.14 14 16 C 0.12 2.32 7.46 -17.15 -0.13 2.20 14 17 Cl -0.02 -0.40 28.42 -51.86 -1.47 -1.87 14 18 H 0.03 0.57 8.14 -51.93 -0.42 0.15 14 19 H 0.06 1.43 8.12 -51.93 -0.42 1.01 14 20 H 0.07 1.59 5.47 -51.93 -0.28 1.30 14 21 H 0.27 8.22 8.73 -40.82 -0.36 7.87 14 22 H 0.18 2.40 8.06 -52.49 -0.42 1.98 14 23 H 0.15 2.03 8.06 -52.48 -0.42 1.60 14 LS Contribution 221.31 15.07 3.34 3.34 Total: -1.00 -29.90 221.31 -4.59 -34.48 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -1.91 Total: -0.54 kcal Atomic # 6 Polarization: -15.41 SS G_CDS: -1.01 Total: -16.42 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: 0.97 Total: -38.19 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -4.50 Total: 19.21 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.47 Total: -1.87 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -29.90 -4.59 -34.48 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260936333.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.642 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds