Wall clock time and date at job start Mon Mar 30 2020 03:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.30675 * 2 1 4 4 C 1.53097 * 109.38941 * 240.25276 * 2 1 3 5 5 S 1.81750 * 108.84102 * 176.82597 * 4 2 1 6 6 C 1.81748 * 102.22400 * 53.25957 * 5 4 2 7 7 C 1.53098 * 108.84057 * 306.73878 * 6 5 4 8 8 C 1.52577 * 109.95647 * 63.02231 * 7 6 5 9 9 H 1.09000 * 109.22999 * 49.59972 * 8 7 6 10 10 C 1.50706 * 109.22755 * 169.00171 * 8 7 6 11 11 H 1.07997 * 119.99684 * 114.38943 * 10 8 7 12 12 C 1.37877 * 119.99805 * 294.39295 * 10 8 7 13 13 N 1.31510 * 119.99550 * 164.41329 * 12 10 8 14 14 Si 1.86797 * 120.00210 * 344.40698 * 12 10 8 15 15 H 1.48501 * 109.47084 * 180.02562 * 14 12 10 16 16 H 1.48502 * 109.46916 * 60.00234 * 14 12 10 17 17 H 1.48505 * 109.46928 * 300.00600 * 14 12 10 18 18 H 1.09000 * 109.47177 * 300.24543 * 1 2 3 19 19 H 1.09004 * 109.47686 * 60.24477 * 1 2 3 20 20 H 1.09003 * 109.46867 * 180.24342 * 1 2 3 21 21 H 1.09005 * 109.46968 * 179.75381 * 3 2 1 22 22 H 1.09003 * 109.47376 * 299.75305 * 3 2 1 23 23 H 1.08998 * 109.46851 * 59.75432 * 3 2 1 24 24 H 1.08993 * 109.57717 * 57.01560 * 4 2 1 25 25 H 1.08999 * 109.57308 * 296.62656 * 4 2 1 26 26 H 1.08995 * 109.57654 * 186.92837 * 6 5 4 27 27 H 1.09004 * 109.57028 * 66.54260 * 6 5 4 28 28 H 1.09001 * 109.38964 * 302.87229 * 7 6 5 29 29 H 1.08995 * 109.38957 * 183.17157 * 7 6 5 30 30 H 0.96999 * 120.00703 * 354.72358 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0358 1.4440 0.0000 4 6 2.0382 -0.7165 -1.2538 5 16 3.8531 -0.6257 -1.2867 6 6 4.3011 -1.2838 0.3471 7 6 3.5381 -0.5033 1.4207 8 6 2.0367 -0.7142 1.2495 9 1 1.8319 -1.7811 1.1601 10 6 1.3182 -0.1706 2.4576 11 1 0.6590 0.6789 2.3568 12 6 1.5025 -0.7578 3.6914 13 7 1.1365 -0.1225 4.7831 14 14 2.2718 -2.4557 3.8121 15 1 2.3583 -2.8596 5.2385 16 1 3.6344 -2.4248 3.2224 17 1 1.4339 -3.4326 3.0713 18 1 -0.3633 0.5176 0.8878 19 1 -0.3634 0.5100 -0.8922 20 1 -0.3633 -1.0277 0.0044 21 1 3.1259 1.4471 0.0044 22 1 1.6747 1.9556 -0.8922 23 1 1.6674 1.9580 0.8878 24 1 1.6321 -0.2317 -2.1415 25 1 1.7253 -1.7604 -1.2300 26 1 5.3734 -1.1695 0.5054 27 1 4.0322 -2.3387 0.4020 28 1 3.7673 0.5583 1.3279 29 1 3.8424 -0.8529 2.4071 30 1 0.8081 0.7885 4.7272 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260958999.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:12 Heat of formation + Delta-G solvation = -36.592772 kcal Electronic energy + Delta-G solvation = -11872.122286 eV Core-core repulsion = 9985.075744 eV Total energy + Delta-G solvation = -1887.046541 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.71222 -34.75862 -33.61325 -29.54529 -28.24268 -27.88053 -24.43071 -22.88038 -19.96178 -18.97860 -17.64834 -16.11383 -15.87294 -15.47124 -15.11657 -14.69493 -14.30277 -14.04238 -13.70384 -13.15591 -12.84094 -12.62943 -12.56733 -12.34871 -12.09867 -11.91765 -11.69686 -11.31939 -11.16520 -10.63734 -10.54244 -10.26097 -8.65468 -8.47067 -6.24861 0.95999 1.45063 1.50842 1.65099 1.69729 2.52321 3.11665 3.90082 3.91771 4.09389 4.20604 4.31953 4.49386 4.61391 4.68393 4.73890 4.85778 4.90373 5.03113 5.08349 5.21412 5.29474 5.41721 5.47998 5.54123 5.80990 6.14158 6.17577 6.69128 7.49471 8.73720 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.038374 B = 0.016056 C = 0.013223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.488281 B = 1743.460321 C = 2117.043400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.053 4.053 3 C -0.128 4.128 4 C -0.061 4.061 5 S -0.286 6.286 6 C -0.075 4.075 7 C -0.127 4.127 8 C 0.022 3.978 9 H 0.016 0.984 10 C -0.573 4.573 11 H 0.032 0.968 12 C -0.023 4.023 13 N -0.949 5.949 14 Si 1.071 2.929 15 H -0.298 1.298 16 H -0.240 1.240 17 H -0.271 1.271 18 H 0.039 0.961 19 H 0.062 0.938 20 H 0.046 0.954 21 H 0.067 0.933 22 H 0.057 0.943 23 H 0.029 0.971 24 H 0.114 0.886 25 H 0.083 0.917 26 H 0.111 0.889 27 H 0.081 0.919 28 H 0.064 0.936 29 H 0.056 0.944 30 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.164 -2.676 -11.571 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.055 4.055 3 C -0.185 4.185 4 C -0.209 4.209 5 S -0.058 6.058 6 C -0.223 4.223 7 C -0.166 4.166 8 C 0.003 3.997 9 H 0.034 0.966 10 C -0.611 4.611 11 H 0.051 0.949 12 C -0.220 4.220 13 N -0.586 5.586 14 Si 0.894 3.106 15 H -0.225 1.225 16 H -0.164 1.164 17 H -0.196 1.196 18 H 0.058 0.942 19 H 0.081 0.919 20 H 0.065 0.935 21 H 0.086 0.914 22 H 0.076 0.924 23 H 0.049 0.951 24 H 0.133 0.867 25 H 0.101 0.899 26 H 0.130 0.870 27 H 0.100 0.900 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 5.267 -3.516 -11.361 13.006 hybrid contribution -1.592 1.147 0.534 2.033 sum 3.675 -2.369 -10.827 11.677 Atomic orbital electron populations 1.21695 0.94356 1.01109 1.00652 1.20483 0.95934 0.95908 0.93153 1.21877 1.01813 0.94871 0.99957 1.23617 0.92009 1.03821 1.01442 1.86281 1.09201 1.86411 1.23950 1.23516 1.03775 1.01850 0.93183 1.22226 0.96879 1.00180 0.97275 1.18957 0.92006 0.95107 0.93624 0.96604 1.22214 1.28306 1.16496 0.94039 0.94944 1.26957 0.96115 1.06886 0.92085 1.70958 1.44040 1.12821 1.30789 0.83753 0.78397 0.72707 0.75712 1.22496 1.16400 1.19626 0.94230 0.91887 0.93450 0.91406 0.92396 0.95148 0.86749 0.89880 0.87048 0.89984 0.91754 0.92599 0.94005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.30 8.01 71.98 0.58 -3.72 16 2 C -0.05 -1.94 0.53 -52.29 -0.03 -1.97 16 3 C -0.13 -4.62 7.41 71.98 0.53 -4.08 16 4 C -0.06 -1.84 5.27 72.01 0.38 -1.46 16 5 S -0.29 -8.80 20.78 -56.49 -1.17 -9.97 16 6 C -0.08 -2.42 6.45 72.01 0.46 -1.96 16 7 C -0.13 -5.05 4.44 30.49 0.14 -4.91 16 8 C 0.02 0.96 0.89 -11.82 -0.01 0.95 16 9 H 0.02 0.70 6.72 -2.39 -0.02 0.69 16 10 C -0.57 -30.53 7.37 25.60 0.19 -30.34 16 11 H 0.03 1.90 5.89 -2.91 -0.02 1.89 16 12 C -0.02 -1.32 5.27 84.66 0.45 -0.87 16 13 N -0.95 -58.85 13.69 21.45 0.29 -58.56 16 14 Si 1.07 48.99 26.17 68.60 1.80 50.79 16 15 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 16 H -0.24 -9.57 5.77 99.48 0.57 -8.99 16 17 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 18 H 0.04 1.67 6.09 -2.39 -0.01 1.65 16 19 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 20 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 21 H 0.07 2.43 4.94 -2.38 -0.01 2.42 16 22 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.03 1.24 7.20 -2.39 -0.02 1.23 16 24 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 25 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 26 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 27 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.06 2.63 5.78 -2.39 -0.01 2.61 16 29 H 0.06 2.39 4.78 -2.39 -0.01 2.38 16 30 H 0.25 15.81 8.73 -92.71 -0.81 15.00 16 Total: -1.00 -59.95 233.40 4.54 -55.41 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.94 Total: 10.71 kcal Atomic # 6 Polarization: -51.06 SS G_CDS: 2.69 Total: -48.37 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.29 Total: -58.56 kcal Atomic # 14 Polarization: 48.99 SS G_CDS: 1.80 Total: 50.79 kcal Atomic # 16 Polarization: -8.80 SS G_CDS: -1.17 Total: -9.97 kcal Total: -59.95 4.54 -55.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260958999.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.814 kcal (2) G-P(sol) polarization free energy of solvation -59.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds