Wall clock time and date at job start Mon Mar 30 2020 03:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.38962 * 2 1 4 4 C 1.53093 * 109.39044 * 240.29485 * 2 1 3 5 5 S 1.81755 * 108.84070 * 302.87559 * 4 2 1 6 6 C 1.81750 * 102.21981 * 306.73519 * 5 4 2 7 7 C 1.53097 * 108.84180 * 53.26532 * 6 5 4 8 8 C 1.52579 * 109.38826 * 119.79831 * 2 1 3 9 9 H 1.08999 * 109.22876 * 169.79248 * 8 2 1 10 10 C 1.50695 * 109.22924 * 289.15575 * 8 2 1 11 11 H 1.08000 * 120.00241 * 1.23194 * 10 8 2 12 12 C 1.37883 * 120.00267 * 181.24103 * 10 8 2 13 13 N 1.31509 * 119.99713 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99989 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47138 * 59.99863 * 14 12 10 16 16 H 1.48501 * 109.47034 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46933 * 299.99563 * 14 12 10 18 18 H 1.09006 * 109.47621 * 300.19925 * 1 2 3 19 19 H 1.09004 * 109.47545 * 60.20269 * 1 2 3 20 20 H 1.09000 * 109.47421 * 180.20264 * 1 2 3 21 21 H 1.09001 * 109.47374 * 179.80103 * 3 2 1 22 22 H 1.09003 * 109.47122 * 299.80152 * 3 2 1 23 23 H 1.09000 * 109.47233 * 59.79841 * 3 2 1 24 24 H 1.08993 * 109.57832 * 183.07157 * 4 2 1 25 25 H 1.08995 * 109.57779 * 62.68337 * 4 2 1 26 26 H 1.08997 * 109.57396 * 173.07264 * 6 5 4 27 27 H 1.08994 * 109.57520 * 293.45676 * 6 5 4 28 28 H 1.09004 * 109.38712 * 57.11957 * 7 6 5 29 29 H 1.08993 * 109.38967 * 176.92384 * 7 6 5 30 30 H 0.97007 * 119.99914 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0379 1.4432 0.0000 4 6 2.0383 -0.7156 -1.2543 5 16 1.3524 -2.3984 -1.2886 6 6 1.8254 -3.0400 0.3448 7 6 1.3411 -2.0627 1.4191 8 6 2.0365 -0.7152 1.2490 9 1 3.1111 -0.8747 1.1604 10 6 1.7608 0.1415 2.4577 11 1 1.2557 1.0893 2.3440 12 6 2.1536 -0.2846 3.7088 13 7 2.7684 -1.4388 3.8473 14 14 1.8125 0.7778 5.2070 15 1 0.3487 0.9870 5.3425 16 1 2.3298 0.0997 6.4227 17 1 2.4876 2.0907 5.0468 18 1 -0.3634 0.5169 0.8882 19 1 -0.3634 0.5107 -0.8918 20 1 -0.3634 -1.0276 0.0036 21 1 3.1279 1.4448 0.0036 22 1 1.6767 1.9555 -0.8918 23 1 1.6709 1.9575 0.8882 24 1 3.1268 -0.7654 -1.2306 25 1 1.7150 -0.1713 -2.1416 26 1 1.3631 -4.0144 0.5023 27 1 2.9098 -3.1351 0.3997 28 1 0.2634 -1.9280 1.3263 29 1 1.5719 -2.4655 2.4052 30 1 3.0451 -1.7384 4.7275 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260959001.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:19 Heat of formation + Delta-G solvation = -20.958363 kcal Electronic energy + Delta-G solvation = -11813.540459 eV Core-core repulsion = 9927.171876 eV Total energy + Delta-G solvation = -1886.368583 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -37.82466 -32.85189 -31.35391 -27.59837 -26.54987 -26.15213 -23.27779 -20.87557 -17.86201 -16.22662 -15.91508 -14.69862 -13.96382 -13.55722 -13.38840 -12.92125 -12.47324 -12.21803 -11.73445 -11.49472 -11.10736 -10.95914 -10.78744 -10.60406 -10.47626 -10.33010 -9.94297 -9.51812 -9.26767 -8.87636 -8.64379 -8.26805 -6.95199 -6.01453 -4.08003 2.56167 3.26692 3.29122 3.34267 3.36593 4.40181 5.25933 5.55874 5.57361 5.85608 5.96447 6.06529 6.11337 6.26298 6.37850 6.43740 6.51501 6.71139 6.76445 6.99463 7.11114 7.16379 7.20396 7.35086 7.66528 7.91824 8.06485 8.41031 8.94127 9.56161 11.02967 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.045848 B = 0.013418 C = 0.011456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.568449 B = 2086.306691 C = 2443.566317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.060 4.060 3 C -0.124 4.124 4 C -0.058 4.058 5 S -0.318 6.318 6 C -0.063 4.063 7 C -0.120 4.120 8 C 0.055 3.945 9 H 0.023 0.977 10 C -0.503 4.503 11 H 0.061 0.939 12 C 0.059 3.941 13 N -0.892 5.892 14 Si 0.888 3.112 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.278 1.278 18 H 0.057 0.943 19 H 0.030 0.970 20 H 0.068 0.932 21 H 0.045 0.955 22 H 0.030 0.970 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.105 0.895 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.810 0.737 -5.859 6.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.061 4.061 3 C -0.183 4.183 4 C -0.206 4.206 5 S -0.091 6.091 6 C -0.211 4.211 7 C -0.159 4.159 8 C 0.037 3.963 9 H 0.041 0.959 10 C -0.541 4.541 11 H 0.079 0.921 12 C -0.142 4.142 13 N -0.531 5.531 14 Si 0.717 3.283 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.204 1.204 18 H 0.076 0.924 19 H 0.049 0.951 20 H 0.087 0.913 21 H 0.064 0.936 22 H 0.049 0.951 23 H 0.089 0.911 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.123 0.877 30 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.286 0.071 -6.553 6.941 hybrid contribution 0.623 1.053 1.781 2.161 sum -1.663 1.124 -4.772 5.177 Atomic orbital electron populations 1.21949 0.94953 1.02376 0.99862 1.20681 0.95880 0.95293 0.94287 1.21787 1.00300 0.95719 1.00524 1.23557 1.01960 0.93243 1.01847 1.86174 1.78541 1.17556 1.26789 1.23552 1.03175 1.01395 0.92989 1.21945 0.99212 0.95974 0.98798 1.18587 0.95262 0.91634 0.90836 0.95891 1.21200 1.37411 1.04400 0.91092 0.92072 1.24974 0.95209 0.95089 0.98888 1.69839 1.40092 1.19808 1.23370 0.86711 0.78607 0.80621 0.82405 1.20311 1.21403 1.20354 0.92377 0.95098 0.91329 0.93599 0.95080 0.91144 0.90903 0.89648 0.89924 0.90910 0.92954 0.87678 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 7.41 37.16 0.28 -2.29 16 2 C -0.06 -1.19 0.53 -154.68 -0.08 -1.28 16 3 C -0.12 -2.33 8.01 37.15 0.30 -2.03 16 4 C -0.06 -1.06 5.26 37.21 0.20 -0.86 16 5 S -0.32 -5.96 20.79 -107.50 -2.23 -8.20 16 6 C -0.06 -1.26 6.46 37.21 0.24 -1.02 16 7 C -0.12 -2.73 4.73 -26.89 -0.13 -2.86 16 8 C 0.06 1.30 1.28 -92.20 -0.12 1.18 16 9 H 0.02 0.61 8.08 -51.93 -0.42 0.19 16 10 C -0.50 -12.92 7.14 -34.44 -0.25 -13.17 16 11 H 0.06 1.55 5.61 -52.49 -0.29 1.25 16 12 C 0.06 1.57 5.25 -17.82 -0.09 1.47 16 13 N -0.89 -24.53 11.28 55.43 0.63 -23.90 16 14 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 18 H 0.06 1.16 7.32 -51.93 -0.38 0.78 16 19 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 20 H 0.07 1.35 4.94 -51.93 -0.26 1.09 16 21 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 22 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.07 1.40 6.00 -51.93 -0.31 1.09 16 24 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 25 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 26 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 27 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16 28 H 0.05 1.18 5.78 -51.93 -0.30 0.88 16 29 H 0.11 2.69 5.80 -51.93 -0.30 2.39 16 30 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 237.84 15.07 3.58 3.58 Total: -1.00 -26.15 237.84 -7.06 -33.21 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -4.36 Total: 0.48 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: 0.34 Total: -20.85 kcal Atomic # 7 Polarization: -24.53 SS G_CDS: 0.63 Total: -23.90 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: -5.96 SS G_CDS: -2.23 Total: -8.20 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -26.15 -7.06 -33.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260959001.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.250 kcal (2) G-P(sol) polarization free energy of solvation -26.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds