Wall clock time and date at job start Mon Mar 30 2020 03:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.38962 * 2 1 4 4 C 1.53093 * 109.39044 * 240.29485 * 2 1 3 5 5 S 1.81755 * 108.84070 * 302.87559 * 4 2 1 6 6 C 1.81750 * 102.21981 * 306.73519 * 5 4 2 7 7 C 1.53097 * 108.84180 * 53.26532 * 6 5 4 8 8 C 1.52579 * 109.38826 * 119.79831 * 2 1 3 9 9 H 1.08999 * 109.22876 * 169.79248 * 8 2 1 10 10 C 1.50695 * 109.22924 * 289.15575 * 8 2 1 11 11 H 1.08000 * 120.00241 * 1.23194 * 10 8 2 12 12 C 1.37883 * 120.00267 * 181.24103 * 10 8 2 13 13 N 1.31509 * 119.99713 * 359.97438 * 12 10 8 14 14 Si 1.86800 * 119.99989 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47138 * 59.99863 * 14 12 10 16 16 H 1.48501 * 109.47034 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46933 * 299.99563 * 14 12 10 18 18 H 1.09006 * 109.47621 * 300.19925 * 1 2 3 19 19 H 1.09004 * 109.47545 * 60.20269 * 1 2 3 20 20 H 1.09000 * 109.47421 * 180.20264 * 1 2 3 21 21 H 1.09001 * 109.47374 * 179.80103 * 3 2 1 22 22 H 1.09003 * 109.47122 * 299.80152 * 3 2 1 23 23 H 1.09000 * 109.47233 * 59.79841 * 3 2 1 24 24 H 1.08993 * 109.57832 * 183.07157 * 4 2 1 25 25 H 1.08995 * 109.57779 * 62.68337 * 4 2 1 26 26 H 1.08997 * 109.57396 * 173.07264 * 6 5 4 27 27 H 1.08994 * 109.57520 * 293.45676 * 6 5 4 28 28 H 1.09004 * 109.38712 * 57.11957 * 7 6 5 29 29 H 1.08993 * 109.38967 * 176.92384 * 7 6 5 30 30 H 0.97007 * 119.99914 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0379 1.4432 0.0000 4 6 2.0383 -0.7156 -1.2543 5 16 1.3524 -2.3984 -1.2886 6 6 1.8254 -3.0400 0.3448 7 6 1.3411 -2.0627 1.4191 8 6 2.0365 -0.7152 1.2490 9 1 3.1111 -0.8747 1.1604 10 6 1.7608 0.1415 2.4577 11 1 1.2557 1.0893 2.3440 12 6 2.1536 -0.2846 3.7088 13 7 2.7684 -1.4388 3.8473 14 14 1.8125 0.7778 5.2070 15 1 0.3487 0.9870 5.3425 16 1 2.3298 0.0997 6.4227 17 1 2.4876 2.0907 5.0468 18 1 -0.3634 0.5169 0.8882 19 1 -0.3634 0.5107 -0.8918 20 1 -0.3634 -1.0276 0.0036 21 1 3.1279 1.4448 0.0036 22 1 1.6767 1.9555 -0.8918 23 1 1.6709 1.9575 0.8882 24 1 3.1268 -0.7654 -1.2306 25 1 1.7150 -0.1713 -2.1416 26 1 1.3631 -4.0144 0.5023 27 1 2.9098 -3.1351 0.3997 28 1 0.2634 -1.9280 1.3263 29 1 1.5719 -2.4655 2.4052 30 1 3.0451 -1.7384 4.7275 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260959001.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:19 Heat of formation + Delta-G solvation = -34.043104 kcal Electronic energy + Delta-G solvation = -11814.107856 eV Core-core repulsion = 9927.171876 eV Total energy + Delta-G solvation = -1886.935980 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.51430 -34.73571 -33.13423 -29.37274 -28.09657 -27.73235 -25.17213 -22.60825 -19.58089 -18.15505 -17.52168 -16.53531 -15.59983 -15.26991 -15.04385 -14.49219 -14.14131 -13.93197 -13.51273 -13.03927 -12.81459 -12.74272 -12.49382 -12.24623 -12.12978 -12.09519 -11.65428 -11.27360 -11.03775 -10.65224 -10.45064 -10.15511 -8.47646 -8.02177 -6.15348 1.04104 1.43048 1.43955 1.50283 1.71768 2.45479 3.22640 4.01671 4.05207 4.22625 4.39160 4.42509 4.63500 4.74053 4.78772 4.85855 5.01921 5.05910 5.18709 5.35446 5.42700 5.51571 5.53488 5.62646 5.72399 6.00399 6.17547 6.44285 6.94297 7.51424 8.99481 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.045848 B = 0.013418 C = 0.011456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.568449 B = 2086.306691 C = 2443.566317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.060 4.060 3 C -0.121 4.121 4 C -0.058 4.058 5 S -0.295 6.295 6 C -0.064 4.064 7 C -0.113 4.113 8 C 0.056 3.944 9 H -0.014 1.014 10 C -0.510 4.510 11 H 0.063 0.937 12 C 0.010 3.990 13 N -0.919 5.919 14 Si 0.944 3.056 15 H -0.273 1.273 16 H -0.290 1.290 17 H -0.273 1.273 18 H 0.043 0.957 19 H 0.057 0.943 20 H 0.061 0.939 21 H 0.039 0.961 22 H 0.063 0.937 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.114 0.886 26 H 0.099 0.901 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.585 1.532 -7.104 7.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.062 4.062 3 C -0.179 4.179 4 C -0.206 4.206 5 S -0.068 6.068 6 C -0.212 4.212 7 C -0.152 4.152 8 C 0.038 3.962 9 H 0.005 0.995 10 C -0.548 4.548 11 H 0.081 0.919 12 C -0.187 4.187 13 N -0.559 5.559 14 Si 0.771 3.229 15 H -0.198 1.198 16 H -0.216 1.216 17 H -0.199 1.199 18 H 0.062 0.938 19 H 0.076 0.924 20 H 0.080 0.920 21 H 0.058 0.942 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.133 0.867 26 H 0.117 0.883 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.091 0.909 30 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.068 0.874 -7.807 8.434 hybrid contribution 0.869 0.812 2.134 2.443 sum -2.198 1.686 -5.674 6.314 Atomic orbital electron populations 1.21871 0.94062 1.02097 1.00489 1.20627 0.96522 0.95796 0.93253 1.21728 0.99930 0.94961 1.01324 1.23588 1.01938 0.93080 1.01993 1.86088 1.78285 1.17734 1.24691 1.23410 1.02667 1.01626 0.93469 1.21744 0.99043 0.96230 0.98227 1.18530 0.93192 0.92257 0.92246 0.99546 1.21552 1.36618 1.04630 0.92000 0.91886 1.25673 0.95436 0.96130 1.01504 1.69985 1.41232 1.21161 1.23570 0.85816 0.78538 0.79181 0.79346 1.19780 1.21634 1.19880 0.93794 0.92399 0.92026 0.94186 0.91834 0.92748 0.91101 0.86748 0.88298 0.91862 0.92951 0.90928 0.93330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 7.41 71.98 0.53 -4.07 16 2 C -0.06 -2.30 0.53 -52.29 -0.03 -2.33 16 3 C -0.12 -4.27 8.01 71.98 0.58 -3.69 16 4 C -0.06 -1.96 5.26 72.01 0.38 -1.58 16 5 S -0.30 -10.40 20.79 -56.49 -1.17 -11.57 16 6 C -0.06 -2.50 6.46 72.01 0.46 -2.03 16 7 C -0.11 -5.19 4.73 30.49 0.14 -5.04 16 8 C 0.06 2.66 1.28 -11.82 -0.02 2.64 16 9 H -0.01 -0.73 8.08 -2.39 -0.02 -0.75 16 10 C -0.51 -26.35 7.14 25.60 0.18 -26.17 16 11 H 0.06 3.18 5.61 -2.91 -0.02 3.16 16 12 C 0.01 0.55 5.25 84.66 0.44 1.00 16 13 N -0.92 -51.77 11.28 21.45 0.24 -51.52 16 14 Si 0.94 42.69 29.54 68.60 2.03 44.72 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 16 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 17 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 18 H 0.04 1.68 7.32 -2.38 -0.02 1.67 16 19 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 20 H 0.06 2.29 4.94 -2.39 -0.01 2.28 16 21 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 23 H 0.05 2.08 6.00 -2.39 -0.01 2.07 16 24 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 25 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 26 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 27 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.05 2.35 5.78 -2.38 -0.01 2.34 16 29 H 0.07 3.82 5.80 -2.39 -0.01 3.81 16 30 H 0.26 14.02 8.31 -92.70 -0.77 13.25 16 Total: -1.00 -55.14 237.84 4.88 -50.26 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 1.11 Total: 9.40 kcal Atomic # 6 Polarization: -43.96 SS G_CDS: 2.68 Total: -41.28 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.24 Total: -51.52 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: -10.40 SS G_CDS: -1.17 Total: -11.57 kcal Total: -55.14 4.88 -50.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260959001.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.216 kcal (2) G-P(sol) polarization free energy of solvation -55.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds