Wall clock time and date at job start Mon Mar 30 2020 03:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 113.00002 * 2 1 4 4 C 1.52999 * 109.46626 * 50.33314 * 3 2 1 5 5 C 1.53006 * 109.47000 * 180.02562 * 4 3 2 6 6 O 1.42897 * 109.47261 * 180.02562 * 5 4 3 7 7 C 1.34927 * 116.99858 * 180.02562 * 6 5 4 8 8 H 1.08003 * 120.00238 * 0.02562 * 7 6 5 9 9 C 1.38634 * 120.00050 * 179.97438 * 7 6 5 10 10 N 1.31590 * 119.99864 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 120.00443 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46976 * 59.99892 * 11 9 7 13 13 H 1.48490 * 109.47368 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.46626 * 300.00255 * 11 9 7 15 15 C 1.54035 * 113.82100 * 131.82944 * 2 1 3 16 16 O 1.44446 * 85.42615 * 91.80793 * 15 2 1 17 17 C 1.44181 * 93.37989 * 24.08844 * 16 15 2 18 18 H 1.09000 * 109.47296 * 59.99488 * 1 2 3 19 19 H 1.08997 * 109.47222 * 180.02562 * 1 2 3 20 20 H 1.09000 * 109.47005 * 299.99712 * 1 2 3 21 21 H 1.08993 * 109.46955 * 170.33787 * 3 2 1 22 22 H 1.09000 * 109.47050 * 290.33615 * 3 2 1 23 23 H 1.08993 * 109.47839 * 299.99931 * 4 3 2 24 24 H 1.09000 * 109.47160 * 60.00369 * 4 3 2 25 25 H 1.09004 * 109.47107 * 300.00294 * 5 4 3 26 26 H 1.09000 * 109.46866 * 60.00185 * 5 4 3 27 27 H 0.97000 * 120.00093 * 180.02562 * 10 9 7 28 28 H 1.08993 * 113.86527 * 205.91700 * 15 2 1 29 29 H 1.09000 * 113.86149 * 337.61829 * 15 2 1 30 30 H 1.08995 * 113.86724 * 221.76545 * 17 16 15 31 31 H 1.09002 * 113.97953 * 90.07117 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1278 1.4084 0.0000 4 6 1.4795 2.2376 1.1104 5 6 2.0768 3.6462 1.1101 6 8 1.4717 4.4205 2.1475 7 6 1.8898 5.6961 2.2830 8 1 2.6489 6.0887 1.6227 9 6 1.3440 6.5034 3.2691 10 7 0.4187 6.0254 4.0733 11 14 1.9222 8.2698 3.4563 12 1 1.6587 9.0128 2.1979 13 1 1.1893 8.9146 4.5752 14 1 3.3789 8.2858 3.7449 15 6 2.1521 -0.9398 1.0500 16 8 2.1472 -1.9296 -0.0020 17 6 2.1520 -0.9397 -1.0502 18 1 -0.3634 0.5139 -0.8899 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 3.2023 1.3470 0.1725 22 1 1.9411 1.8824 -0.9636 23 1 0.4050 2.2990 0.9379 24 1 1.6663 1.7636 2.0740 25 1 3.1514 3.5852 1.2824 26 1 1.8896 4.1199 0.1464 27 1 0.0366 6.5903 4.7631 28 1 3.1503 -0.6427 1.3713 29 1 1.4870 -1.1742 1.8811 30 1 1.4868 -1.1741 -1.8813 31 1 3.1494 -0.6413 -1.3732 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260963809.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:02 Heat of formation + Delta-G solvation = -64.646428 kcal Electronic energy + Delta-G solvation = -12778.838008 eV Core-core repulsion = 10447.822098 eV Total energy + Delta-G solvation = -2331.015910 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.66174 -36.48455 -34.38112 -31.75502 -30.11244 -26.79787 -26.56320 -25.15038 -23.69020 -20.86947 -18.69612 -17.42408 -16.09355 -15.89089 -15.82795 -14.97207 -14.82637 -13.92242 -13.59850 -13.06979 -12.85622 -12.33808 -12.21736 -12.00301 -11.52034 -11.25768 -11.00716 -10.81894 -10.45517 -10.37920 -10.24454 -9.95397 -9.59058 -9.40944 -9.12363 -7.94378 -5.93187 -3.56884 3.32617 3.34123 3.37668 3.69387 4.14235 4.33329 4.72471 5.04659 5.09974 5.28481 5.37497 5.44743 5.46505 5.53794 5.78558 5.84215 5.85328 5.96026 6.11036 6.12821 6.13543 6.21875 6.29276 6.42535 6.69771 6.84487 6.86114 7.48972 8.45229 9.50269 10.20347 11.28183 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.087567 B = 0.005795 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 319.676612 B = 4830.338982 C = 4919.040515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.124 4.124 3 C -0.108 4.108 4 C -0.113 4.113 5 C 0.073 3.927 6 O -0.298 6.298 7 C -0.361 4.361 8 H 0.061 0.939 9 C 0.022 3.978 10 N -0.890 5.890 11 Si 0.926 3.074 12 H -0.278 1.278 13 H -0.283 1.283 14 H -0.278 1.278 15 C 0.041 3.959 16 O -0.386 6.386 17 C 0.039 3.961 18 H 0.062 0.938 19 H 0.058 0.942 20 H 0.072 0.928 21 H 0.064 0.936 22 H 0.066 0.934 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.019 0.981 26 H 0.020 0.980 27 H 0.258 0.742 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.608 -10.858 -8.552 14.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.124 4.124 3 C -0.145 4.145 4 C -0.151 4.151 5 C -0.005 4.005 6 O -0.213 6.213 7 C -0.440 4.440 8 H 0.078 0.922 9 C -0.176 4.176 10 N -0.534 5.534 11 Si 0.753 3.247 12 H -0.204 1.204 13 H -0.208 1.208 14 H -0.204 1.204 15 C -0.036 4.036 16 O -0.305 6.305 17 C -0.037 4.037 18 H 0.081 0.919 19 H 0.077 0.923 20 H 0.091 0.909 21 H 0.083 0.917 22 H 0.085 0.915 23 H 0.087 0.913 24 H 0.083 0.917 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.068 0.932 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.359 -11.172 -8.292 14.111 hybrid contribution 0.544 1.222 -0.079 1.340 sum 2.903 -9.949 -8.371 13.322 Atomic orbital electron populations 1.21621 0.92084 1.02001 1.03136 1.23614 0.97632 0.95816 0.95356 1.21550 0.99707 0.93435 0.99838 1.21454 1.00764 0.94761 0.98110 1.22096 0.95238 0.91194 0.91946 1.85615 1.62482 1.23396 1.49836 1.20769 1.20724 0.86528 1.15980 0.92155 1.24959 0.97344 0.98777 0.96534 1.70014 1.27777 1.35844 1.19732 0.86039 0.78298 0.82648 0.77750 1.20393 1.20840 1.20396 1.24175 1.00626 0.86456 0.92299 1.89665 1.95805 1.27847 1.17153 1.24073 1.00307 0.86973 0.92396 0.91940 0.92286 0.90938 0.91732 0.91537 0.91287 0.91731 0.96283 0.96232 0.93187 0.90003 0.89103 0.89474 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 8.47 37.16 0.31 -1.22 16 2 C -0.12 -1.49 1.05 -153.42 -0.16 -1.65 16 3 C -0.11 -1.44 4.76 -26.73 -0.13 -1.57 16 4 C -0.11 -2.00 5.02 -26.73 -0.13 -2.13 16 5 C 0.07 1.62 6.02 37.16 0.22 1.85 16 6 O -0.30 -8.77 9.78 -16.50 -0.16 -8.93 16 7 C -0.36 -10.87 9.89 30.88 0.31 -10.57 16 8 H 0.06 1.70 7.77 -52.48 -0.41 1.30 16 9 C 0.02 0.66 5.49 -17.51 -0.10 0.56 16 10 N -0.89 -28.37 13.68 55.48 0.76 -27.61 16 11 Si 0.93 22.31 29.55 -169.99 -5.02 17.29 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 15 C 0.04 0.50 8.36 37.64 0.31 0.81 16 16 O -0.39 -5.19 12.38 -35.23 -0.44 -5.63 16 17 C 0.04 0.43 8.37 37.64 0.32 0.75 16 18 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 19 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 20 H 0.07 0.92 6.68 -51.93 -0.35 0.57 16 21 H 0.06 0.82 7.98 -51.93 -0.41 0.41 16 22 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.07 1.24 6.61 -51.93 -0.34 0.90 16 24 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.08 0.94 7.99 -51.93 -0.41 0.52 16 29 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 30 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 31 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 LS Contribution 262.57 15.07 3.96 3.96 Total: -1.00 -33.71 262.57 -4.81 -38.52 By element: Atomic # 1 Polarization: 0.43 SS G_CDS: -4.86 Total: -4.43 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: 0.95 Total: -13.17 kcal Atomic # 7 Polarization: -28.37 SS G_CDS: 0.76 Total: -27.61 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.60 Total: -14.56 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -33.71 -4.81 -38.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260963809.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.130 kcal (2) G-P(sol) polarization free energy of solvation -33.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds