Wall clock time and date at job start Mon Mar 30 2020 03:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34637 * 116.99912 * 2 1 4 4 O 1.21511 * 120.00368 * 0.02562 * 3 2 1 5 5 N 1.34779 * 119.99797 * 179.97438 * 3 2 1 6 6 C 1.47066 * 136.05571 * 180.02562 * 5 3 2 7 7 C 1.53504 * 88.04678 * 207.12426 * 6 5 3 8 8 N 1.46896 * 114.20605 * 87.54661 * 7 6 5 9 9 C 1.50703 * 114.20523 * 220.37340 * 7 6 5 10 10 H 1.08004 * 119.99655 * 0.02562 * 9 7 6 11 11 C 1.37874 * 119.99845 * 180.02562 * 9 7 6 12 12 N 1.31519 * 119.99837 * 359.97438 * 11 9 7 13 13 Si 1.86801 * 119.99979 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46984 * 59.99712 * 13 11 9 15 15 H 1.48497 * 109.47149 * 179.97438 * 13 11 9 16 16 H 1.48502 * 109.46659 * 299.99467 * 13 11 9 17 17 C 1.47064 * 136.05768 * 0.04680 * 5 3 2 18 18 H 1.08992 * 109.47183 * 180.02562 * 1 2 3 19 19 H 1.09001 * 109.47208 * 300.00414 * 1 2 3 20 20 H 1.09002 * 109.47184 * 60.00098 * 1 2 3 21 21 H 1.09002 * 113.46793 * 321.93398 * 6 5 3 22 22 H 1.08999 * 113.46805 * 92.31765 * 6 5 3 23 23 H 1.00901 * 111.00080 * 179.97438 * 8 7 6 24 24 H 1.00903 * 110.99914 * 303.95510 * 8 7 6 25 25 H 0.97004 * 119.99468 * 180.02562 * 12 11 9 26 26 H 1.08999 * 113.47096 * 267.62545 * 17 5 3 27 27 H 1.09005 * 113.46966 * 38.00938 * 17 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2187 0.0005 5 7 3.4092 1.2701 0.0005 6 6 4.4132 2.3447 0.0012 7 6 5.3755 1.3745 -0.6982 8 7 5.2671 1.3700 -2.1631 9 6 6.7968 1.4496 -0.2030 10 1 7.0598 2.1454 0.5801 11 6 7.7615 0.6301 -0.7496 12 7 7.4411 -0.2175 -1.7028 13 14 9.5232 0.7227 -0.1354 14 1 9.5594 0.4021 1.3142 15 1 10.3586 -0.2542 -0.8789 16 1 10.0517 2.0933 -0.3527 17 6 4.5201 0.3064 0.0003 18 1 -0.3633 -1.0276 0.0005 19 1 -0.3634 0.5139 0.8899 20 1 -0.3634 0.5138 -0.8900 21 1 4.1347 3.1995 -0.6152 22 1 4.7388 2.6340 1.0004 23 1 5.9194 0.7177 -2.5720 24 1 4.3226 1.1685 -2.4552 25 1 8.1197 -0.7943 -2.0871 26 1 4.8748 0.0526 0.9992 27 1 4.3319 -0.5728 -0.6160 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260978159.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:18 Heat of formation + Delta-G solvation = -37.284496 kcal Electronic energy + Delta-G solvation = -13083.956979 eV Core-core repulsion = 10650.587228 eV Total energy + Delta-G solvation = -2433.369751 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.00343 -38.37441 -35.64367 -33.18514 -30.68807 -28.32800 -26.77991 -25.08721 -25.02556 -20.68255 -18.81108 -17.26443 -16.76362 -16.36807 -15.89325 -15.03296 -14.20099 -13.99815 -13.47851 -13.04994 -12.94166 -12.15720 -11.90311 -11.70317 -11.47077 -11.01995 -10.94500 -10.52575 -10.42773 -10.18008 -9.58751 -9.33158 -8.78615 -8.10687 -7.23600 -6.28327 -4.36381 2.61242 3.22059 3.27562 3.30057 3.37830 4.24543 4.55342 4.95307 5.33384 5.38775 5.60652 5.85133 5.92790 6.15632 6.34614 6.39964 6.55637 6.69618 6.74532 6.84013 7.66255 7.94603 8.40659 8.49408 8.80999 8.89356 9.16295 9.39601 10.78556 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.072477 B = 0.008755 C = 0.008557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.235280 B = 3197.509517 C = 3271.489989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.373 6.373 3 C 0.665 3.335 4 O -0.593 6.593 5 N -0.629 5.629 6 C 0.125 3.875 7 C 0.238 3.762 8 N -0.824 5.824 9 C -0.501 4.501 10 H 0.071 0.929 11 C 0.074 3.926 12 N -0.895 5.895 13 Si 0.908 3.092 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.068 3.932 18 H 0.096 0.904 19 H 0.057 0.943 20 H 0.059 0.941 21 H 0.069 0.931 22 H 0.080 0.920 23 H 0.374 0.626 24 H 0.302 0.698 25 H 0.270 0.730 26 H 0.077 0.923 27 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.754 -1.846 2.329 6.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.287 6.287 3 C 0.421 3.579 4 O -0.485 6.485 5 N -0.370 5.370 6 C 0.004 3.996 7 C 0.143 3.857 8 N -0.361 5.361 9 C -0.540 4.540 10 H 0.089 0.911 11 C -0.129 4.129 12 N -0.534 5.534 13 Si 0.736 3.264 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.199 1.199 17 C -0.057 4.057 18 H 0.114 0.886 19 H 0.076 0.924 20 H 0.077 0.923 21 H 0.087 0.913 22 H 0.098 0.902 23 H 0.200 0.800 24 H 0.111 0.889 25 H 0.080 0.920 26 H 0.095 0.905 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.894 -0.990 2.207 6.371 hybrid contribution 0.218 -1.098 0.516 1.232 sum -5.676 -2.087 2.723 6.633 Atomic orbital electron populations 1.23060 0.75649 1.02721 1.02239 1.86275 1.23109 1.31827 1.87533 1.17558 0.81983 0.81636 0.76762 1.90918 1.64116 1.35107 1.58312 1.48665 0.99827 1.15210 1.73249 1.23565 0.83207 0.92180 1.00642 1.19552 0.92239 0.87713 0.86205 1.58997 1.08840 1.60977 1.07313 1.20768 0.91183 1.21759 1.20251 0.91102 1.25025 0.99550 0.94116 0.94208 1.69319 1.34662 1.23134 1.26252 0.86385 0.83108 0.78122 0.78810 1.20064 1.21176 1.19893 1.24563 0.83316 0.95911 1.01873 0.88556 0.92376 0.92253 0.91296 0.90227 0.79968 0.88894 0.91986 0.90457 0.92245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.79 10.56 101.05 1.07 1.86 15 2 O -0.37 -7.01 10.59 -40.32 -0.43 -7.44 15 3 C 0.66 14.37 8.96 54.06 0.48 14.86 15 4 O -0.59 -13.89 16.91 -19.28 -0.33 -14.22 15 5 N -0.63 -13.64 3.49 -190.84 -0.67 -14.31 15 6 C 0.13 2.70 7.99 -8.50 -0.07 2.64 15 7 C 0.24 5.57 1.49 -132.51 -0.20 5.37 15 8 N -0.82 -19.50 9.49 0.06 0.00 -19.50 15 9 C -0.50 -12.47 8.67 -34.44 -0.30 -12.77 15 10 H 0.07 1.71 7.81 -52.48 -0.41 1.30 15 11 C 0.07 1.83 5.39 -17.82 -0.10 1.74 15 12 N -0.89 -22.79 10.85 55.43 0.60 -22.19 15 13 Si 0.91 19.54 29.54 -169.99 -5.02 14.52 15 14 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 15 H -0.29 -6.16 7.11 56.52 0.40 -5.76 15 16 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 17 C 0.07 1.50 7.91 -8.43 -0.07 1.44 15 18 H 0.10 0.95 8.14 -51.93 -0.42 0.53 15 19 H 0.06 0.76 8.14 -51.93 -0.42 0.33 15 20 H 0.06 0.79 8.14 -51.93 -0.42 0.36 15 21 H 0.07 1.50 8.14 -51.93 -0.42 1.07 15 22 H 0.08 1.60 8.10 -51.93 -0.42 1.18 15 23 H 0.37 9.34 6.08 -39.29 -0.24 9.10 15 24 H 0.30 6.78 8.71 -39.29 -0.34 6.44 15 25 H 0.27 6.60 8.31 -40.82 -0.34 6.26 15 26 H 0.08 1.66 8.10 -51.93 -0.42 1.23 15 27 H 0.06 1.33 8.14 -51.93 -0.42 0.91 15 LS Contribution 240.97 15.07 3.63 3.63 Total: -1.00 -27.92 240.97 -4.46 -32.38 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -3.08 Total: 11.99 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 0.82 Total: 15.13 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.06 Total: -55.99 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.75 Total: -21.66 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -27.92 -4.46 -32.38 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260978159.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.901 kcal (2) G-P(sol) polarization free energy of solvation -27.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds