Wall clock time and date at job start Mon Mar 30 2020 03:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47439 * 2 1 4 4 C 1.52995 * 113.00251 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47602 * 179.97438 * 4 3 2 6 6 O 1.42891 * 109.47338 * 180.02562 * 5 4 3 7 7 C 1.34934 * 116.99949 * 180.02562 * 6 5 4 8 8 H 1.07991 * 119.99807 * 0.02562 * 7 6 5 9 9 C 1.38632 * 119.99669 * 179.73002 * 7 6 5 10 10 N 1.31581 * 120.00433 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99871 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47517 * 89.99181 * 11 9 7 13 13 H 1.48496 * 109.47375 * 209.99711 * 11 9 7 14 14 H 1.48506 * 109.47099 * 329.99412 * 11 9 7 15 15 C 1.54043 * 113.81598 * 311.83072 * 3 2 1 16 16 O 1.44440 * 85.42652 * 91.80673 * 15 3 2 17 17 C 1.44176 * 93.38023 * 24.08930 * 16 15 3 18 18 H 1.08999 * 109.46871 * 59.99321 * 1 2 3 19 19 H 1.08994 * 109.47267 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.46695 * 300.00076 * 1 2 3 21 21 H 1.09006 * 109.46549 * 240.00204 * 2 1 3 22 22 H 1.08996 * 109.47142 * 120.00232 * 2 1 3 23 23 H 1.09002 * 109.47078 * 60.00049 * 4 3 2 24 24 H 1.08996 * 109.47550 * 300.00267 * 4 3 2 25 25 H 1.09002 * 109.46746 * 59.99991 * 5 4 3 26 26 H 1.08996 * 109.47004 * 300.00746 * 5 4 3 27 27 H 0.97000 * 119.99659 * 180.02562 * 10 9 7 28 28 H 1.09005 * 113.86167 * 205.91565 * 15 3 2 29 29 H 1.08995 * 113.86234 * 337.61309 * 15 3 2 30 30 H 1.09003 * 113.86650 * 221.76639 * 17 16 15 31 31 H 1.09001 * 113.87071 * 90.06419 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5672 1.5366 -0.0006 5 6 3.9876 3.0077 -0.0012 6 8 5.4138 3.0956 -0.0024 7 6 5.9512 4.3332 -0.0025 8 1 5.3085 5.2010 -0.0013 9 6 7.3286 4.4907 0.0020 10 7 8.1117 3.4334 0.0069 11 14 8.0727 6.2041 0.0025 12 1 8.2650 6.6599 1.4027 13 1 9.3844 6.1743 -0.6929 14 1 7.1602 7.1403 -0.7019 15 6 1.3614 2.3422 -1.0501 16 8 0.4266 2.6675 0.0019 17 6 1.3615 2.3421 1.0501 18 1 -0.3633 0.5139 -0.8899 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3632 0.5138 0.8900 21 1 1.8933 -0.5138 -0.8901 22 1 1.8934 -0.5138 0.8899 23 1 3.9610 1.0462 -0.8909 24 1 3.9619 1.0459 0.8890 25 1 3.5936 3.4984 0.8888 26 1 3.5929 3.4979 -0.8911 27 1 9.0754 3.5437 0.0105 28 1 1.9743 3.1844 -1.3714 29 1 0.9187 1.7933 -1.8811 30 1 0.9188 1.7932 1.8812 31 1 1.9744 3.1843 1.3715 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260986490.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:45 Heat of formation + Delta-G solvation = -56.177488 kcal Electronic energy + Delta-G solvation = -13158.752184 eV Core-core repulsion = 10828.103515 eV Total energy + Delta-G solvation = -2330.648669 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.84271 -36.28342 -33.76044 -32.03970 -30.81477 -26.48829 -26.47790 -24.40991 -23.94943 -21.41868 -18.18617 -17.62571 -16.25825 -16.01740 -15.33358 -14.84609 -14.63015 -13.97287 -13.75571 -13.02881 -12.86703 -12.31484 -11.95031 -11.91522 -11.42933 -11.31270 -11.16199 -10.81937 -10.60323 -10.22305 -10.12843 -9.98963 -9.43712 -9.36781 -8.97657 -7.95830 -5.95371 -3.59270 3.31139 3.33750 3.37795 3.89188 4.29940 4.33613 4.80895 5.01346 5.29181 5.33427 5.36199 5.54206 5.60113 5.61941 5.62619 5.87586 5.95806 5.98586 6.11013 6.15829 6.27221 6.32937 6.37029 6.46588 6.64975 6.76728 6.78312 7.47533 8.42936 9.48220 10.16885 11.25916 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.073332 B = 0.007116 C = 0.006728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.735181 B = 3933.924686 C = 4160.441077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.121 4.121 4 C -0.108 4.108 5 C 0.070 3.930 6 O -0.297 6.297 7 C -0.361 4.361 8 H 0.062 0.938 9 C 0.022 3.978 10 N -0.890 5.890 11 Si 0.925 3.075 12 H -0.281 1.281 13 H -0.283 1.283 14 H -0.275 1.275 15 C 0.035 3.965 16 O -0.382 6.382 17 C 0.036 3.964 18 H 0.057 0.943 19 H 0.047 0.953 20 H 0.057 0.943 21 H 0.068 0.932 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.258 0.742 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.668 -4.448 -0.025 13.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.136 4.136 3 C -0.122 4.122 4 C -0.145 4.145 5 C -0.008 4.008 6 O -0.212 6.212 7 C -0.440 4.440 8 H 0.079 0.921 9 C -0.176 4.176 10 N -0.533 5.533 11 Si 0.752 3.248 12 H -0.207 1.207 13 H -0.209 1.209 14 H -0.200 1.200 15 C -0.041 4.041 16 O -0.301 6.301 17 C -0.041 4.041 18 H 0.076 0.924 19 H 0.066 0.934 20 H 0.076 0.924 21 H 0.087 0.913 22 H 0.087 0.913 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.068 0.932 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.103 0.897 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.657 -4.563 -0.030 13.454 hybrid contribution 0.469 1.015 0.015 1.118 sum -12.188 -3.548 -0.015 12.694 Atomic orbital electron populations 1.21800 0.95338 1.00563 1.02773 1.21250 0.96005 0.93758 1.02547 1.23586 0.96279 0.96391 0.95902 1.21358 0.91993 0.97830 1.03330 1.22286 0.86657 0.94085 0.97755 1.85617 1.13982 1.28330 1.93272 1.20806 0.90432 0.82478 1.50308 0.92052 1.24959 0.95258 0.98175 0.99172 1.70023 1.03400 1.27947 1.51894 0.85966 0.78711 0.82008 0.78090 1.20685 1.20853 1.20032 1.24277 0.90028 0.97630 0.92175 1.89632 1.32957 1.90526 1.16990 1.24222 0.90050 0.97608 0.92212 0.92381 0.93397 0.92387 0.91331 0.91331 0.91046 0.91043 0.95832 0.95826 0.93211 0.89327 0.89615 0.89652 0.89377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.63 37.16 0.32 -1.30 16 2 C -0.10 -1.17 5.65 -26.73 -0.15 -1.32 16 3 C -0.12 -1.73 1.38 -153.43 -0.21 -1.94 16 4 C -0.11 -1.91 5.36 -26.73 -0.14 -2.06 16 5 C 0.07 1.52 5.25 37.16 0.19 1.72 16 6 O -0.30 -8.63 9.78 -16.52 -0.16 -8.79 16 7 C -0.36 -10.79 9.89 30.88 0.31 -10.48 16 8 H 0.06 1.73 7.77 -52.49 -0.41 1.32 16 9 C 0.02 0.67 5.49 -17.51 -0.10 0.57 16 10 N -0.89 -28.20 13.67 55.48 0.76 -27.44 16 11 Si 0.93 22.26 29.55 -169.99 -5.02 17.23 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 C 0.04 0.50 7.53 37.65 0.28 0.79 16 16 O -0.38 -5.84 10.87 -35.23 -0.38 -6.22 16 17 C 0.04 0.51 7.52 37.64 0.28 0.79 16 18 H 0.06 0.66 6.53 -51.93 -0.34 0.32 16 19 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 20 H 0.06 0.66 6.53 -51.93 -0.34 0.32 16 21 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 24 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 25 H 0.02 0.50 6.08 -51.93 -0.32 0.19 16 26 H 0.02 0.50 6.07 -51.93 -0.32 0.19 16 27 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 28 H 0.09 1.35 5.83 -51.93 -0.30 1.04 16 29 H 0.09 1.06 7.33 -51.93 -0.38 0.68 16 30 H 0.09 1.05 7.33 -51.93 -0.38 0.67 16 31 H 0.09 1.34 5.83 -51.93 -0.30 1.04 16 LS Contribution 250.20 15.07 3.77 3.77 Total: -1.00 -33.03 250.20 -4.58 -37.62 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -4.33 Total: -2.93 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 0.79 Total: -13.24 kcal Atomic # 7 Polarization: -28.20 SS G_CDS: 0.76 Total: -27.44 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.54 Total: -15.01 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -33.03 -4.58 -37.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986490.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.560 kcal (2) G-P(sol) polarization free energy of solvation -33.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds