Wall clock time and date at job start Mon Mar 30 2020 03:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52994 * 109.47439 * 2 1 4 4 C 1.52995 * 113.00251 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47602 * 179.97438 * 4 3 2 6 6 O 1.42891 * 109.47338 * 180.02562 * 5 4 3 7 7 C 1.34934 * 116.99949 * 180.02562 * 6 5 4 8 8 H 1.07991 * 119.99807 * 0.02562 * 7 6 5 9 9 C 1.38632 * 119.99669 * 179.73002 * 7 6 5 10 10 N 1.31581 * 120.00433 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99871 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47517 * 89.99181 * 11 9 7 13 13 H 1.48496 * 109.47375 * 209.99711 * 11 9 7 14 14 H 1.48506 * 109.47099 * 329.99412 * 11 9 7 15 15 C 1.54043 * 113.81598 * 311.83072 * 3 2 1 16 16 O 1.44440 * 85.42652 * 91.80673 * 15 3 2 17 17 C 1.44176 * 93.38023 * 24.08930 * 16 15 3 18 18 H 1.08999 * 109.46871 * 59.99321 * 1 2 3 19 19 H 1.08994 * 109.47267 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.46695 * 300.00076 * 1 2 3 21 21 H 1.09006 * 109.46549 * 240.00204 * 2 1 3 22 22 H 1.08996 * 109.47142 * 120.00232 * 2 1 3 23 23 H 1.09002 * 109.47078 * 60.00049 * 4 3 2 24 24 H 1.08996 * 109.47550 * 300.00267 * 4 3 2 25 25 H 1.09002 * 109.46746 * 59.99991 * 5 4 3 26 26 H 1.08996 * 109.47004 * 300.00746 * 5 4 3 27 27 H 0.97000 * 119.99659 * 180.02562 * 10 9 7 28 28 H 1.09005 * 113.86167 * 205.91565 * 15 3 2 29 29 H 1.08995 * 113.86234 * 337.61309 * 15 3 2 30 30 H 1.09003 * 113.86650 * 221.76639 * 17 16 15 31 31 H 1.09001 * 113.87071 * 90.06419 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5672 1.5366 -0.0006 5 6 3.9876 3.0077 -0.0012 6 8 5.4138 3.0956 -0.0024 7 6 5.9512 4.3332 -0.0025 8 1 5.3085 5.2010 -0.0013 9 6 7.3286 4.4907 0.0020 10 7 8.1117 3.4334 0.0069 11 14 8.0727 6.2041 0.0025 12 1 8.2650 6.6599 1.4027 13 1 9.3844 6.1743 -0.6929 14 1 7.1602 7.1403 -0.7019 15 6 1.3614 2.3422 -1.0501 16 8 0.4266 2.6675 0.0019 17 6 1.3615 2.3421 1.0501 18 1 -0.3633 0.5139 -0.8899 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3632 0.5138 0.8900 21 1 1.8933 -0.5138 -0.8901 22 1 1.8934 -0.5138 0.8899 23 1 3.9610 1.0462 -0.8909 24 1 3.9619 1.0459 0.8890 25 1 3.5936 3.4984 0.8888 26 1 3.5929 3.4979 -0.8911 27 1 9.0754 3.5437 0.0105 28 1 1.9743 3.1844 -1.3714 29 1 0.9187 1.7933 -1.8811 30 1 0.9188 1.7932 1.8812 31 1 1.9744 3.1843 1.3715 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260986490.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:45 Heat of formation + Delta-G solvation = -79.068523 kcal Electronic energy + Delta-G solvation = -13159.744814 eV Core-core repulsion = 10828.103515 eV Total energy + Delta-G solvation = -2331.641299 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.02841 -38.31988 -35.02546 -33.97698 -32.35046 -27.98157 -27.62416 -26.35209 -25.29660 -22.80456 -19.77848 -19.35167 -17.71667 -17.31825 -16.97911 -16.42005 -15.93106 -15.56479 -15.31735 -14.93164 -13.92322 -13.68019 -13.50476 -13.21626 -13.13549 -12.74433 -12.52651 -12.22656 -12.18584 -11.86052 -11.37879 -11.35213 -11.28351 -11.11196 -10.37534 -10.15440 -8.20556 -5.90917 1.38891 1.45556 1.54867 2.31365 2.73985 3.12246 3.18099 3.52803 3.76965 4.14545 4.14739 4.34623 4.42647 4.46996 4.53763 4.57961 4.58108 4.71578 4.91186 5.03071 5.10499 5.10599 5.13407 5.22287 5.24475 5.31702 5.32507 5.50526 6.18675 7.22400 8.02687 9.04525 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.073332 B = 0.007116 C = 0.006728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 381.735181 B = 3933.924686 C = 4160.441077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 C -0.113 4.113 4 C -0.098 4.098 5 C 0.064 3.936 6 O -0.339 6.339 7 C -0.382 4.382 8 H 0.071 0.929 9 C -0.042 4.042 10 N -0.939 5.939 11 Si 1.006 2.994 12 H -0.269 1.269 13 H -0.276 1.276 14 H -0.259 1.259 15 C 0.034 3.966 16 O -0.390 6.390 17 C 0.034 3.966 18 H 0.053 0.947 19 H 0.065 0.935 20 H 0.053 0.947 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.262 0.738 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.592 -4.079 -0.025 14.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 C -0.113 4.113 4 C -0.136 4.136 5 C -0.013 4.013 6 O -0.256 6.256 7 C -0.461 4.461 8 H 0.088 0.912 9 C -0.235 4.235 10 N -0.584 5.584 11 Si 0.828 3.172 12 H -0.194 1.194 13 H -0.202 1.202 14 H -0.184 1.184 15 C -0.043 4.043 16 O -0.309 6.309 17 C -0.043 4.043 18 H 0.072 0.928 19 H 0.084 0.916 20 H 0.072 0.928 21 H 0.094 0.906 22 H 0.094 0.906 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.617 -4.199 -0.028 14.249 hybrid contribution 0.679 0.858 0.016 1.094 sum -12.938 -3.341 -0.013 13.363 Atomic orbital electron populations 1.21755 0.94232 1.01654 1.02329 1.21273 0.96815 0.91814 1.03370 1.23592 0.93341 0.98254 0.96110 1.21288 0.94721 0.94792 1.02759 1.22588 0.83436 0.97100 0.98142 1.85546 1.17868 1.28590 1.93562 1.21326 0.91286 0.83153 1.50286 0.91152 1.26258 0.95553 1.03326 0.98336 1.70191 1.03901 1.31066 1.53231 0.84749 0.77760 0.75933 0.78739 1.19428 1.20161 1.18354 1.24330 0.89907 0.97269 0.92772 1.89628 1.33207 1.90654 1.17419 1.24274 0.89931 0.97250 0.92812 0.92804 0.91566 0.92820 0.90561 0.90570 0.91616 0.91624 0.95281 0.95277 0.92943 0.90796 0.87333 0.87386 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.63 71.98 0.62 -2.12 16 2 C -0.10 -2.05 5.65 30.59 0.17 -1.88 16 3 C -0.11 -3.07 1.38 -51.48 -0.07 -3.14 16 4 C -0.10 -3.48 5.36 30.59 0.16 -3.31 16 5 C 0.06 2.83 5.25 71.98 0.38 3.21 16 6 O -0.34 -20.23 9.78 -82.04 -0.80 -21.03 16 7 C -0.38 -23.09 9.89 67.91 0.67 -22.42 16 8 H 0.07 3.97 7.77 -2.92 -0.02 3.95 16 9 C -0.04 -2.49 5.49 84.82 0.47 -2.02 16 10 N -0.94 -60.53 13.67 21.61 0.30 -60.23 16 11 Si 1.01 45.47 29.55 68.60 2.03 47.50 16 12 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 13 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 14 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 15 C 0.03 0.91 7.53 72.30 0.54 1.46 16 16 O -0.39 -11.31 10.87 -148.98 -1.62 -12.93 16 17 C 0.03 0.92 7.52 72.30 0.54 1.46 16 18 H 0.05 1.08 6.53 -2.39 -0.02 1.07 16 19 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 20 H 0.05 1.08 6.53 -2.39 -0.02 1.06 16 21 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 22 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 24 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.03 1.25 6.08 -2.39 -0.01 1.24 16 26 H 0.03 1.26 6.07 -2.39 -0.01 1.24 16 27 H 0.26 15.62 8.31 -92.71 -0.77 14.84 16 28 H 0.07 2.22 5.83 -2.38 -0.01 2.20 16 29 H 0.11 2.44 7.33 -2.39 -0.02 2.43 16 30 H 0.11 2.44 7.33 -2.39 -0.02 2.42 16 31 H 0.07 2.21 5.83 -2.39 -0.01 2.19 16 Total: -1.00 -70.98 250.20 4.50 -66.48 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 1.11 Total: 8.96 kcal Atomic # 6 Polarization: -32.25 SS G_CDS: 3.49 Total: -28.76 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: 0.30 Total: -60.23 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -2.42 Total: -33.95 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Total: -70.98 4.50 -66.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260986490.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.585 kcal (2) G-P(sol) polarization free energy of solvation -70.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds