Wall clock time and date at job start Mon Mar 30 2020 03:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.57026 * 2 1 4 4 C 1.53086 * 109.52594 * 239.83853 * 2 1 3 5 5 O 1.42905 * 109.41593 * 297.70565 * 4 2 1 6 6 C 1.42904 * 114.09715 * 298.84197 * 5 4 2 7 7 C 1.53089 * 109.41693 * 61.15412 * 6 5 4 8 8 C 1.53179 * 109.16605 * 302.39411 * 7 6 5 9 9 O 1.42895 * 109.54536 * 297.02604 * 8 7 6 10 10 C 1.50697 * 109.54373 * 176.83953 * 8 7 6 11 11 H 1.07991 * 120.00502 * 244.42512 * 10 8 7 12 12 C 1.37880 * 119.99392 * 64.15823 * 10 8 7 13 13 N 1.31517 * 120.00199 * 354.64811 * 12 10 8 14 14 Si 1.86806 * 120.00046 * 174.65081 * 12 10 8 15 15 H 1.48496 * 109.46998 * 94.99014 * 14 12 10 16 16 H 1.48496 * 109.47149 * 214.99244 * 14 12 10 17 17 H 1.48502 * 109.46700 * 334.99325 * 14 12 10 18 18 H 1.09000 * 109.47677 * 299.84325 * 1 2 3 19 19 H 1.09001 * 109.47153 * 59.84827 * 1 2 3 20 20 H 1.09003 * 109.47026 * 179.84469 * 1 2 3 21 21 H 1.08996 * 109.46743 * 180.15277 * 3 2 1 22 22 H 1.08996 * 109.47151 * 300.14990 * 3 2 1 23 23 H 1.08996 * 109.47423 * 60.15460 * 3 2 1 24 24 H 1.08994 * 109.48372 * 177.71629 * 4 2 1 25 25 H 1.09002 * 109.48593 * 57.69285 * 4 2 1 26 26 H 1.09010 * 109.47665 * 301.17466 * 6 5 4 27 27 H 1.09001 * 109.47912 * 181.14375 * 6 5 4 28 28 H 1.08995 * 109.52506 * 182.48714 * 7 6 5 29 29 H 1.09003 * 109.51924 * 62.29766 * 7 6 5 30 30 H 0.96702 * 113.99369 * 299.82008 * 9 8 7 31 31 H 0.97002 * 119.99854 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0425 1.4416 0.0000 4 6 2.0417 -0.7249 -1.2475 5 8 1.6099 -2.0868 -1.2161 6 6 2.0970 -2.8277 -0.0955 7 6 1.5877 -2.1872 1.1983 8 6 2.0419 -0.7252 1.2485 9 8 3.4693 -0.6690 1.2844 10 6 1.4800 -0.0647 2.4809 11 1 0.7732 0.7460 2.3846 12 6 1.8642 -0.4993 3.7318 13 7 2.6377 -1.5562 3.8519 14 14 1.2861 0.4131 5.2559 15 1 0.0662 -0.2422 5.7921 16 1 2.3561 0.3850 6.2852 17 1 0.9765 1.8216 4.9019 18 1 -0.3634 0.5114 0.8914 19 1 -0.3633 0.5162 -0.8886 20 1 -0.3633 -1.0277 -0.0028 21 1 3.1325 1.4397 -0.0027 22 1 1.6779 1.9568 -0.8886 23 1 1.6824 1.9553 0.8913 24 1 3.1308 -0.6893 -1.2676 25 1 1.6456 -0.2384 -2.1389 26 1 3.1871 -2.8196 -0.1005 27 1 1.7407 -3.8560 -0.1569 28 1 1.9940 -2.7244 2.0553 29 1 0.4988 -2.2314 1.2225 30 1 3.8611 -1.1129 2.0490 31 1 2.9077 -1.8621 4.7319 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260992207.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:05 Heat of formation + Delta-G solvation = -109.751652 kcal Electronic energy + Delta-G solvation = -14357.498442 eV Core-core repulsion = 12024.526623 eV Total energy + Delta-G solvation = -2332.971820 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.17649 -35.44272 -33.43218 -32.06689 -30.10999 -26.38713 -26.08571 -25.61953 -22.42715 -21.05001 -17.79007 -16.75966 -15.40760 -15.08907 -14.98385 -14.25016 -13.93162 -13.58274 -12.59850 -12.47648 -12.04642 -11.52771 -11.29572 -11.25297 -11.05157 -10.94595 -10.65842 -10.44776 -10.24324 -10.10700 -9.80936 -9.46938 -9.16560 -8.63768 -8.47758 -7.84532 -6.14687 -4.23344 3.22279 3.30524 3.34450 4.32528 4.71783 5.07801 5.62714 5.79405 5.91618 6.05769 6.18058 6.31589 6.35598 6.36785 6.48872 6.51802 6.62824 6.76402 6.90509 6.94355 7.12187 7.18462 7.24202 7.58027 7.68810 7.90903 8.10834 8.21133 8.77002 9.43903 9.54924 10.87990 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.043140 B = 0.014951 C = 0.013248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.887139 B = 1872.303909 C = 2113.071971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.079 4.079 3 C -0.122 4.122 4 C 0.075 3.925 5 O -0.396 6.396 6 C 0.061 3.939 7 C -0.171 4.171 8 C 0.264 3.736 9 O -0.591 6.591 10 C -0.524 4.524 11 H 0.063 0.937 12 C 0.067 3.933 13 N -0.902 5.902 14 Si 0.895 3.105 15 H -0.282 1.282 16 H -0.285 1.285 17 H -0.274 1.274 18 H 0.061 0.939 19 H 0.034 0.966 20 H 0.055 0.945 21 H 0.055 0.945 22 H 0.030 0.970 23 H 0.061 0.939 24 H 0.048 0.952 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.054 0.946 30 H 0.380 0.620 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.182 0.684 -4.756 4.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.080 4.080 3 C -0.179 4.179 4 C -0.001 4.001 5 O -0.315 6.315 6 C -0.015 4.015 7 C -0.209 4.209 8 C 0.224 3.776 9 O -0.400 6.400 10 C -0.562 4.562 11 H 0.081 0.919 12 C -0.133 4.133 13 N -0.543 5.543 14 Si 0.723 3.277 15 H -0.208 1.208 16 H -0.211 1.211 17 H -0.198 1.198 18 H 0.080 0.920 19 H 0.054 0.946 20 H 0.074 0.926 21 H 0.074 0.926 22 H 0.049 0.951 23 H 0.080 0.920 24 H 0.066 0.934 25 H 0.091 0.909 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.230 0.770 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.304 0.834 -5.313 5.533 hybrid contribution -0.078 0.178 1.753 1.764 sum -1.382 1.011 -3.559 3.950 Atomic orbital electron populations 1.21727 0.94697 1.01592 1.00229 1.21008 0.95476 0.95813 0.95658 1.21579 1.01117 0.95231 1.00022 1.22547 0.98251 0.82112 0.97215 1.87738 1.74708 1.22762 1.46325 1.22625 0.97776 0.94051 0.87080 1.22847 1.00551 1.00673 0.96850 1.18478 0.78930 0.89490 0.90667 1.86068 1.21836 1.81150 1.50970 1.21769 1.25912 1.17745 0.90771 0.91867 1.24995 0.94778 0.94413 0.99143 1.69595 1.37046 1.23502 1.24155 0.86523 0.78283 0.80325 0.82527 1.20786 1.21127 1.19830 0.92014 0.94644 0.92628 0.92640 0.95115 0.92006 0.93389 0.90926 0.93825 0.91109 0.88543 0.92755 0.76999 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 7.78 37.16 0.29 -2.21 16 2 C -0.08 -1.68 0.37 -154.37 -0.06 -1.74 16 3 C -0.12 -2.45 8.11 37.16 0.30 -2.15 16 4 C 0.08 1.51 5.39 37.20 0.20 1.71 16 5 O -0.40 -8.32 10.19 -35.23 -0.36 -8.67 16 6 C 0.06 1.27 6.69 37.20 0.25 1.52 16 7 C -0.17 -3.99 4.53 -26.59 -0.12 -4.11 16 8 C 0.26 6.35 0.14 -91.59 -0.01 6.34 16 9 O -0.59 -14.90 11.14 -35.23 -0.39 -15.29 16 10 C -0.52 -13.62 6.79 -34.44 -0.23 -13.85 16 11 H 0.06 1.65 5.72 -52.49 -0.30 1.35 16 12 C 0.07 1.75 5.23 -17.82 -0.09 1.66 16 13 N -0.90 -23.71 9.78 55.43 0.54 -23.17 16 14 Si 0.90 20.61 29.54 -169.99 -5.02 15.58 16 15 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H 0.06 1.27 6.38 -51.93 -0.33 0.94 16 19 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 20 H 0.05 1.14 6.14 -51.93 -0.32 0.82 16 21 H 0.05 1.15 7.62 -51.93 -0.40 0.75 16 22 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 1.30 6.93 -51.93 -0.36 0.94 16 24 H 0.05 0.99 7.82 -51.93 -0.41 0.58 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.04 0.92 7.82 -51.92 -0.41 0.51 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.10 2.43 6.30 -51.93 -0.33 2.10 16 29 H 0.05 1.28 6.63 -51.93 -0.34 0.94 16 30 H 0.38 9.87 7.04 45.56 0.32 10.19 16 31 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 LS Contribution 236.27 15.07 3.56 3.56 Total: -1.00 -26.58 236.27 -4.84 -31.42 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -3.69 Total: 9.39 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: 0.52 Total: -12.83 kcal Atomic # 7 Polarization: -23.71 SS G_CDS: 0.54 Total: -23.17 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: -0.75 Total: -23.96 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 3.56 Total: 3.56 kcal Total: -26.58 -4.84 -31.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992207.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.333 kcal (2) G-P(sol) polarization free energy of solvation -26.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds