Wall clock time and date at job start Mon Mar 30 2020 03:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.57026 * 2 1 4 4 C 1.53086 * 109.52594 * 239.83853 * 2 1 3 5 5 O 1.42905 * 109.41593 * 297.70565 * 4 2 1 6 6 C 1.42904 * 114.09715 * 298.84197 * 5 4 2 7 7 C 1.53089 * 109.41693 * 61.15412 * 6 5 4 8 8 C 1.53179 * 109.16605 * 302.39411 * 7 6 5 9 9 O 1.42895 * 109.54536 * 297.02604 * 8 7 6 10 10 C 1.50697 * 109.54373 * 176.83953 * 8 7 6 11 11 H 1.07991 * 120.00502 * 244.42512 * 10 8 7 12 12 C 1.37880 * 119.99392 * 64.15823 * 10 8 7 13 13 N 1.31517 * 120.00199 * 354.64811 * 12 10 8 14 14 Si 1.86806 * 120.00046 * 174.65081 * 12 10 8 15 15 H 1.48496 * 109.46998 * 94.99014 * 14 12 10 16 16 H 1.48496 * 109.47149 * 214.99244 * 14 12 10 17 17 H 1.48502 * 109.46700 * 334.99325 * 14 12 10 18 18 H 1.09000 * 109.47677 * 299.84325 * 1 2 3 19 19 H 1.09001 * 109.47153 * 59.84827 * 1 2 3 20 20 H 1.09003 * 109.47026 * 179.84469 * 1 2 3 21 21 H 1.08996 * 109.46743 * 180.15277 * 3 2 1 22 22 H 1.08996 * 109.47151 * 300.14990 * 3 2 1 23 23 H 1.08996 * 109.47423 * 60.15460 * 3 2 1 24 24 H 1.08994 * 109.48372 * 177.71629 * 4 2 1 25 25 H 1.09002 * 109.48593 * 57.69285 * 4 2 1 26 26 H 1.09010 * 109.47665 * 301.17466 * 6 5 4 27 27 H 1.09001 * 109.47912 * 181.14375 * 6 5 4 28 28 H 1.08995 * 109.52506 * 182.48714 * 7 6 5 29 29 H 1.09003 * 109.51924 * 62.29766 * 7 6 5 30 30 H 0.96702 * 113.99369 * 299.82008 * 9 8 7 31 31 H 0.97002 * 119.99854 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0425 1.4416 0.0000 4 6 2.0417 -0.7249 -1.2475 5 8 1.6099 -2.0868 -1.2161 6 6 2.0970 -2.8277 -0.0955 7 6 1.5877 -2.1872 1.1983 8 6 2.0419 -0.7252 1.2485 9 8 3.4693 -0.6690 1.2844 10 6 1.4800 -0.0647 2.4809 11 1 0.7732 0.7460 2.3846 12 6 1.8642 -0.4993 3.7318 13 7 2.6377 -1.5562 3.8519 14 14 1.2861 0.4131 5.2559 15 1 0.0662 -0.2422 5.7921 16 1 2.3561 0.3850 6.2852 17 1 0.9765 1.8216 4.9019 18 1 -0.3634 0.5114 0.8914 19 1 -0.3633 0.5162 -0.8886 20 1 -0.3633 -1.0277 -0.0028 21 1 3.1325 1.4397 -0.0027 22 1 1.6779 1.9568 -0.8886 23 1 1.6824 1.9553 0.8913 24 1 3.1308 -0.6893 -1.2676 25 1 1.6456 -0.2384 -2.1389 26 1 3.1871 -2.8196 -0.1005 27 1 1.7407 -3.8560 -0.1569 28 1 1.9940 -2.7244 2.0553 29 1 0.4988 -2.2314 1.2225 30 1 3.8611 -1.1129 2.0490 31 1 2.9077 -1.8621 4.7319 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260992207.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:04 Heat of formation + Delta-G solvation = -127.729157 kcal Electronic energy + Delta-G solvation = -14358.278005 eV Core-core repulsion = 12024.526623 eV Total energy + Delta-G solvation = -2333.751383 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.90025 -37.23430 -35.16567 -34.06463 -31.91732 -28.16963 -27.82623 -27.24914 -24.24490 -22.79842 -19.56500 -18.68237 -17.22897 -16.85740 -16.69782 -16.01909 -15.73279 -15.33973 -14.41291 -14.14977 -13.80509 -13.41913 -13.00247 -12.85882 -12.81099 -12.62304 -12.46733 -12.14069 -12.10007 -11.89292 -11.62471 -11.22880 -10.88189 -10.59341 -10.28155 -9.72520 -8.11582 -6.26432 1.38508 1.42565 1.50888 2.40799 3.07825 3.11829 3.92187 4.16363 4.24345 4.37996 4.46780 4.66675 4.71327 4.77133 4.81933 4.93736 4.98896 5.12983 5.20175 5.25820 5.37762 5.49938 5.54757 5.67490 5.85503 6.02170 6.26937 6.41876 6.76929 7.42811 7.52297 8.88503 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.043140 B = 0.014951 C = 0.013248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.887139 B = 1872.303909 C = 2113.071971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.085 4.085 3 C -0.116 4.116 4 C 0.075 3.925 5 O -0.397 6.397 6 C 0.067 3.933 7 C -0.165 4.165 8 C 0.252 3.748 9 O -0.595 6.595 10 C -0.539 4.539 11 H 0.057 0.943 12 C 0.026 3.974 13 N -0.917 5.917 14 Si 0.949 3.051 15 H -0.280 1.280 16 H -0.284 1.284 17 H -0.273 1.273 18 H 0.048 0.952 19 H 0.065 0.935 20 H 0.045 0.955 21 H 0.042 0.958 22 H 0.065 0.935 23 H 0.044 0.956 24 H 0.040 0.960 25 H 0.105 0.895 26 H 0.039 0.961 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.372 0.628 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.767 1.162 -5.685 6.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.085 4.085 3 C -0.173 4.173 4 C -0.001 4.001 5 O -0.316 6.316 6 C -0.010 4.010 7 C -0.204 4.204 8 C 0.213 3.787 9 O -0.404 6.404 10 C -0.577 4.577 11 H 0.075 0.925 12 C -0.173 4.173 13 N -0.558 5.558 14 Si 0.776 3.224 15 H -0.206 1.206 16 H -0.210 1.210 17 H -0.198 1.198 18 H 0.067 0.933 19 H 0.084 0.916 20 H 0.064 0.936 21 H 0.061 0.939 22 H 0.083 0.917 23 H 0.063 0.937 24 H 0.058 0.942 25 H 0.123 0.877 26 H 0.057 0.943 27 H 0.113 0.887 28 H 0.092 0.908 29 H 0.064 0.936 30 H 0.221 0.779 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.894 1.315 -6.252 6.664 hybrid contribution 0.105 0.034 2.035 2.038 sum -1.790 1.349 -4.217 4.776 Atomic orbital electron populations 1.21659 0.93654 1.01226 1.01082 1.21085 0.96311 0.96293 0.94860 1.21504 1.00249 0.94686 1.00897 1.22648 0.97965 0.81702 0.97798 1.87742 1.74701 1.23257 1.45912 1.22572 0.97447 0.95076 0.85858 1.22699 0.99785 1.00419 0.97456 1.18693 0.78154 0.90174 0.91657 1.86071 1.22746 1.81087 1.50459 1.22011 1.25979 1.17755 0.91932 0.92456 1.25620 0.95163 0.95118 1.01421 1.69687 1.37507 1.24102 1.24517 0.85682 0.77788 0.79201 0.79719 1.20566 1.21013 1.19818 0.93318 0.91587 0.93581 0.93898 0.91657 0.93650 0.94200 0.87667 0.94310 0.88690 0.90843 0.93589 0.77874 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.50 7.78 71.98 0.56 -3.94 16 2 C -0.09 -3.47 0.37 -52.09 -0.02 -3.49 16 3 C -0.12 -4.43 8.11 71.98 0.58 -3.85 16 4 C 0.08 2.82 5.39 72.01 0.39 3.20 16 5 O -0.40 -15.71 10.19 -148.98 -1.52 -17.23 16 6 C 0.07 2.69 6.69 72.01 0.48 3.18 16 7 C -0.17 -7.67 4.53 30.68 0.14 -7.53 16 8 C 0.25 12.07 0.14 -11.42 0.00 12.07 16 9 O -0.60 -30.11 11.14 -148.98 -1.66 -31.77 16 10 C -0.54 -28.02 6.79 25.60 0.17 -27.85 16 11 H 0.06 2.99 5.72 -2.92 -0.02 2.97 16 12 C 0.03 1.33 5.23 84.65 0.44 1.77 16 13 N -0.92 -48.57 9.78 21.45 0.21 -48.36 16 14 Si 0.95 42.27 29.54 68.60 2.03 44.30 16 15 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 16 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 18 H 0.05 1.94 6.38 -2.39 -0.02 1.92 16 19 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 20 H 0.05 1.80 6.14 -2.39 -0.01 1.79 16 21 H 0.04 1.71 7.62 -2.39 -0.02 1.69 16 22 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.04 1.85 6.93 -2.39 -0.02 1.84 16 24 H 0.04 1.56 7.82 -2.39 -0.02 1.54 16 25 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 26 H 0.04 1.60 7.82 -2.38 -0.02 1.58 16 27 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 28 H 0.07 3.74 6.30 -2.39 -0.02 3.73 16 29 H 0.05 2.16 6.63 -2.39 -0.02 2.15 16 30 H 0.37 19.68 7.04 -74.06 -0.52 19.16 16 31 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 Total: -1.00 -54.96 236.27 2.41 -52.55 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: 0.60 Total: 26.94 kcal Atomic # 6 Polarization: -29.18 SS G_CDS: 2.75 Total: -26.43 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: 0.21 Total: -48.36 kcal Atomic # 8 Polarization: -45.82 SS G_CDS: -3.18 Total: -49.00 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -54.96 2.41 -52.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260992207.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.182 kcal (2) G-P(sol) polarization free energy of solvation -54.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds