Wall clock time and date at job start Mon Mar 30 2020 03:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46872 * 2 1 4 4 C 1.52991 * 109.47089 * 120.00212 * 2 1 3 5 5 C 1.53000 * 113.00177 * 309.66714 * 4 2 1 6 6 O 1.42902 * 109.47265 * 180.02562 * 5 4 2 7 7 C 1.34925 * 116.99891 * 179.97438 * 6 5 4 8 8 H 1.08002 * 120.00399 * 0.02562 * 7 6 5 9 9 C 1.38642 * 119.99741 * 179.72203 * 7 6 5 10 10 N 1.31574 * 119.99840 * 0.27848 * 9 7 6 11 11 Si 1.86803 * 119.99885 * 180.27983 * 9 7 6 12 12 H 1.48508 * 109.46872 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47141 * 120.00043 * 11 9 7 14 14 H 1.48506 * 109.46902 * 240.00294 * 11 9 7 15 15 C 1.54031 * 113.81890 * 81.49323 * 4 2 1 16 16 O 1.44448 * 85.42652 * 91.80534 * 15 4 2 17 17 C 1.44178 * 93.37755 * 24.09098 * 16 15 4 18 18 H 1.08998 * 109.47028 * 299.99772 * 1 2 3 19 19 H 1.09001 * 109.47072 * 59.99776 * 1 2 3 20 20 H 1.09001 * 109.47321 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47028 * 240.00228 * 2 1 3 22 22 H 1.09001 * 109.46865 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.47455 * 299.99990 * 3 2 1 24 24 H 1.08998 * 109.47108 * 60.00277 * 3 2 1 25 25 H 1.08997 * 109.47213 * 60.00387 * 5 4 2 26 26 H 1.09005 * 109.46887 * 299.99723 * 5 4 2 27 27 H 0.97005 * 119.99691 * 179.97438 * 10 9 7 28 28 H 1.08993 * 113.86851 * 205.91321 * 15 4 2 29 29 H 1.09004 * 113.86422 * 337.62405 * 15 4 2 30 30 H 1.08995 * 113.86640 * 221.76575 * 17 16 15 31 31 H 1.08999 * 113.86506 * 90.06075 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.3917 -0.2141 2.5389 6 8 1.9205 -0.9354 3.6534 7 6 1.4499 -0.6070 4.8746 8 1 0.7067 0.1700 4.9759 9 6 1.9160 -1.2713 5.9987 10 7 2.8211 -2.2182 5.8752 11 14 1.2588 -0.8220 7.6886 12 1 0.2573 0.2666 7.5568 13 1 0.6187 -2.0125 8.3033 14 1 2.3785 -0.3623 8.5490 15 6 2.0508 -2.2561 1.1203 16 8 3.4083 -2.0919 0.6548 17 6 3.5750 -0.8257 1.3239 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 3.1300 1.4425 0.0005 23 1 1.6766 1.9564 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 0.3134 -0.3644 2.4870 26 1 1.6052 0.8480 2.6596 27 1 3.1475 -2.6827 6.6618 28 1 1.9716 -2.7792 2.0733 29 1 1.3671 -2.6400 0.3632 30 1 4.0975 -0.0774 0.7280 31 1 3.9622 -0.9111 2.3392 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261004785.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:11 Heat of formation + Delta-G solvation = -59.225304 kcal Electronic energy + Delta-G solvation = -13559.200344 eV Core-core repulsion = 11228.419511 eV Total energy + Delta-G solvation = -2330.780833 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.26623 -36.04749 -34.85663 -31.71024 -28.93133 -27.46672 -25.45698 -25.06129 -23.69772 -21.73766 -17.65444 -17.57456 -15.90955 -15.54264 -15.34108 -14.62010 -14.13419 -13.61110 -13.49935 -13.16460 -13.08400 -12.09775 -11.94877 -11.54265 -11.39094 -11.26284 -10.95737 -10.94918 -10.59652 -10.23149 -10.17377 -9.62215 -9.36092 -9.23737 -8.73793 -7.96919 -5.96356 -3.59992 3.29560 3.33072 3.37316 4.27356 4.36091 4.68455 4.97024 5.15987 5.35775 5.49776 5.56137 5.62963 5.79499 5.82288 5.95692 6.05317 6.12955 6.13912 6.31161 6.36194 6.40091 6.54284 6.59804 6.64744 6.78609 6.82414 6.91438 7.47237 8.41905 9.47301 10.15102 11.24434 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.046169 B = 0.009835 C = 0.008912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.325246 B = 2846.166183 C = 3141.152369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.069 4.069 3 C -0.148 4.148 4 C -0.122 4.122 5 C 0.081 3.919 6 O -0.293 6.293 7 C -0.360 4.360 8 H 0.061 0.939 9 C 0.024 3.976 10 N -0.887 5.887 11 Si 0.923 3.077 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.052 3.948 16 O -0.393 6.393 17 C 0.052 3.948 18 H 0.060 0.940 19 H 0.051 0.949 20 H 0.055 0.945 21 H 0.074 0.926 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.029 0.971 26 H 0.026 0.974 27 H 0.257 0.743 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.111 4.817 -9.621 11.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.087 4.087 3 C -0.205 4.205 4 C -0.122 4.122 5 C 0.003 3.997 6 O -0.209 6.209 7 C -0.439 4.439 8 H 0.079 0.921 9 C -0.175 4.175 10 N -0.530 5.530 11 Si 0.750 3.250 12 H -0.200 1.200 13 H -0.209 1.209 14 H -0.209 1.209 15 C -0.024 4.024 16 O -0.312 6.312 17 C -0.025 4.025 18 H 0.079 0.921 19 H 0.070 0.930 20 H 0.074 0.926 21 H 0.092 0.908 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.717 4.409 -9.712 11.007 hybrid contribution -0.650 0.531 1.037 1.334 sum -3.367 4.940 -8.675 10.535 Atomic orbital electron populations 1.21862 0.95115 1.01884 1.01634 1.20800 0.95710 0.95899 0.96292 1.21859 1.01187 0.95818 1.01633 1.23614 0.96753 0.96491 0.95324 1.21982 0.95666 0.94659 0.87362 1.85575 1.64192 1.59048 1.12060 1.20809 1.21880 1.18816 0.82381 0.92082 1.24933 0.97572 0.96964 0.97988 1.70024 1.29995 1.24119 1.28835 0.85926 0.78273 0.77958 0.82794 1.19983 1.20905 1.20910 1.24030 0.83367 0.95130 0.99882 1.89562 1.31615 1.40308 1.69724 1.24026 0.94861 0.85156 0.98446 0.92096 0.92978 0.92627 0.90750 0.92530 0.92886 0.92272 0.95326 0.95582 0.93261 0.88312 0.90722 0.90597 0.88388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.63 37.16 0.32 -1.62 16 2 C -0.07 -0.99 2.43 -90.62 -0.22 -1.21 16 3 C -0.15 -1.92 8.88 37.16 0.33 -1.59 16 4 C -0.12 -2.23 0.56 -153.43 -0.09 -2.31 16 5 C 0.08 1.74 4.81 37.16 0.18 1.92 16 6 O -0.29 -8.11 7.85 -16.50 -0.13 -8.24 16 7 C -0.36 -10.41 9.89 30.88 0.31 -10.11 16 8 H 0.06 1.68 7.77 -52.49 -0.41 1.27 16 9 C 0.02 0.69 5.49 -17.51 -0.10 0.60 16 10 N -0.89 -27.51 13.67 55.48 0.76 -26.75 16 11 Si 0.92 21.98 29.55 -169.99 -5.02 16.96 16 12 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 C 0.05 1.01 8.19 37.64 0.31 1.32 16 16 O -0.39 -8.04 12.39 -35.23 -0.44 -8.48 16 17 C 0.05 1.00 8.01 37.64 0.30 1.30 16 18 H 0.06 0.84 6.61 -51.93 -0.34 0.50 16 19 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 20 H 0.05 0.72 8.12 -51.93 -0.42 0.30 16 21 H 0.07 1.06 8.06 -51.93 -0.42 0.64 16 22 H 0.06 0.72 6.62 -51.93 -0.34 0.38 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.80 7.04 -51.93 -0.37 0.44 16 25 H 0.03 0.60 6.68 -51.93 -0.35 0.26 16 26 H 0.03 0.55 7.08 -51.93 -0.37 0.18 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.10 2.22 7.37 -51.93 -0.38 1.84 16 29 H 0.07 1.22 8.07 -51.93 -0.42 0.81 16 30 H 0.08 1.25 6.60 -51.93 -0.34 0.90 16 31 H 0.10 2.21 7.37 -51.93 -0.38 1.83 16 LS Contribution 253.65 15.07 3.82 3.82 Total: -1.00 -31.81 253.65 -4.19 -35.99 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -4.52 Total: -1.60 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 1.34 Total: -11.70 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.76 Total: -26.75 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: -0.57 Total: -16.72 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.81 -4.19 -35.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261004785.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.234 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds