Wall clock time and date at job start Mon Mar 30 2020 03:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46872 * 2 1 4 4 C 1.52991 * 109.47089 * 120.00212 * 2 1 3 5 5 C 1.53000 * 113.00177 * 309.66714 * 4 2 1 6 6 O 1.42902 * 109.47265 * 180.02562 * 5 4 2 7 7 C 1.34925 * 116.99891 * 179.97438 * 6 5 4 8 8 H 1.08002 * 120.00399 * 0.02562 * 7 6 5 9 9 C 1.38642 * 119.99741 * 179.72203 * 7 6 5 10 10 N 1.31574 * 119.99840 * 0.27848 * 9 7 6 11 11 Si 1.86803 * 119.99885 * 180.27983 * 9 7 6 12 12 H 1.48508 * 109.46872 * 359.97438 * 11 9 7 13 13 H 1.48494 * 109.47141 * 120.00043 * 11 9 7 14 14 H 1.48506 * 109.46902 * 240.00294 * 11 9 7 15 15 C 1.54031 * 113.81890 * 81.49323 * 4 2 1 16 16 O 1.44448 * 85.42652 * 91.80534 * 15 4 2 17 17 C 1.44178 * 93.37755 * 24.09098 * 16 15 4 18 18 H 1.08998 * 109.47028 * 299.99772 * 1 2 3 19 19 H 1.09001 * 109.47072 * 59.99776 * 1 2 3 20 20 H 1.09001 * 109.47321 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47028 * 240.00228 * 2 1 3 22 22 H 1.09001 * 109.46865 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.47455 * 299.99990 * 3 2 1 24 24 H 1.08998 * 109.47108 * 60.00277 * 3 2 1 25 25 H 1.08997 * 109.47213 * 60.00387 * 5 4 2 26 26 H 1.09005 * 109.46887 * 299.99723 * 5 4 2 27 27 H 0.97005 * 119.99691 * 179.97438 * 10 9 7 28 28 H 1.08993 * 113.86851 * 205.91321 * 15 4 2 29 29 H 1.09004 * 113.86422 * 337.62405 * 15 4 2 30 30 H 1.08995 * 113.86640 * 221.76575 * 17 16 15 31 31 H 1.08999 * 113.86506 * 90.06075 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 1.3917 -0.2141 2.5389 6 8 1.9205 -0.9354 3.6534 7 6 1.4499 -0.6070 4.8746 8 1 0.7067 0.1700 4.9759 9 6 1.9160 -1.2713 5.9987 10 7 2.8211 -2.2182 5.8752 11 14 1.2588 -0.8220 7.6886 12 1 0.2573 0.2666 7.5568 13 1 0.6187 -2.0125 8.3033 14 1 2.3785 -0.3623 8.5490 15 6 2.0508 -2.2561 1.1203 16 8 3.4083 -2.0919 0.6548 17 6 3.5750 -0.8257 1.3239 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 1.8933 -0.5138 -0.8900 22 1 3.1300 1.4425 0.0005 23 1 1.6766 1.9564 -0.8900 24 1 1.6767 1.9563 0.8900 25 1 0.3134 -0.3644 2.4870 26 1 1.6052 0.8480 2.6596 27 1 3.1475 -2.6827 6.6618 28 1 1.9716 -2.7792 2.0733 29 1 1.3671 -2.6400 0.3632 30 1 4.0975 -0.0774 0.7280 31 1 3.9622 -0.9111 2.3392 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261004785.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:08 Heat of formation + Delta-G solvation = -81.340773 kcal Electronic energy + Delta-G solvation = -13560.159343 eV Core-core repulsion = 11228.419511 eV Total energy + Delta-G solvation = -2331.739831 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.81617 -38.03321 -36.19201 -33.87131 -30.50966 -28.64482 -27.10739 -26.81032 -25.63544 -23.01221 -19.70912 -19.11308 -17.66922 -17.06738 -16.97147 -16.52666 -15.86886 -15.29102 -14.95733 -14.44626 -14.36878 -14.11201 -13.36567 -13.23018 -12.95459 -12.76154 -12.41391 -12.22629 -12.06047 -11.84426 -11.67744 -11.52518 -11.11553 -10.91913 -10.39810 -10.12534 -8.17503 -5.86541 1.39169 1.44215 1.54920 2.31851 2.80084 3.13156 3.23593 3.59283 3.81045 4.12797 4.22396 4.33205 4.50525 4.61238 4.65088 4.67631 4.77093 4.83936 4.85136 4.98552 5.02699 5.14844 5.14921 5.19982 5.27769 5.36501 5.45050 5.50110 6.20941 7.25840 8.06256 9.06986 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.046169 B = 0.009835 C = 0.008912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.325246 B = 2846.166183 C = 3141.152369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.062 4.062 3 C -0.147 4.147 4 C -0.108 4.108 5 C 0.077 3.923 6 O -0.328 6.328 7 C -0.375 4.375 8 H 0.071 0.929 9 C -0.041 4.041 10 N -0.937 5.937 11 Si 1.002 2.998 12 H -0.257 1.257 13 H -0.277 1.277 14 H -0.277 1.277 15 C 0.049 3.951 16 O -0.402 6.402 17 C 0.048 3.952 18 H 0.049 0.951 19 H 0.080 0.920 20 H 0.054 0.946 21 H 0.087 0.913 22 H 0.056 0.944 23 H 0.080 0.920 24 H 0.048 0.952 25 H 0.035 0.965 26 H 0.031 0.969 27 H 0.259 0.741 28 H 0.056 0.944 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.286 6.189 -10.551 12.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.081 4.081 3 C -0.204 4.204 4 C -0.108 4.108 5 C 0.000 4.000 6 O -0.244 6.244 7 C -0.453 4.453 8 H 0.088 0.912 9 C -0.234 4.234 10 N -0.582 5.582 11 Si 0.825 3.175 12 H -0.181 1.181 13 H -0.203 1.203 14 H -0.203 1.203 15 C -0.028 4.028 16 O -0.322 6.322 17 C -0.028 4.028 18 H 0.068 0.932 19 H 0.099 0.901 20 H 0.073 0.927 21 H 0.105 0.895 22 H 0.075 0.925 23 H 0.099 0.901 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.128 0.872 30 H 0.128 0.872 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.905 5.799 -10.666 12.753 hybrid contribution -0.276 0.106 1.242 1.277 sum -4.181 5.905 -9.424 11.881 Atomic orbital electron populations 1.21866 0.93849 1.02163 1.02515 1.20846 0.96724 0.96437 0.94079 1.21869 1.01264 0.94723 1.02550 1.23658 0.95550 0.95904 0.95682 1.22215 0.96198 0.94552 0.87001 1.85546 1.65266 1.60601 1.13022 1.21311 1.21852 1.18871 0.83310 0.91150 1.26162 0.97801 0.96774 1.02636 1.70204 1.31897 1.25784 1.30290 0.84741 0.77970 0.78205 0.76612 1.18073 1.20280 1.20300 1.23993 0.83678 0.96033 0.99081 1.89544 1.32293 1.40952 1.69387 1.23984 0.96308 0.85624 0.96915 0.93202 0.90112 0.92719 0.89503 0.92482 0.90062 0.93274 0.94656 0.95068 0.93202 0.92566 0.87210 0.87163 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.63 71.98 0.62 -2.78 16 2 C -0.06 -1.64 2.43 -10.80 -0.03 -1.66 16 3 C -0.15 -3.35 8.88 71.98 0.64 -2.72 16 4 C -0.11 -3.87 0.56 -51.49 -0.03 -3.90 16 5 C 0.08 3.34 4.81 71.98 0.35 3.69 16 6 O -0.33 -18.75 7.85 -81.94 -0.64 -19.39 16 7 C -0.37 -22.03 9.89 67.92 0.67 -21.36 16 8 H 0.07 3.87 7.77 -2.91 -0.02 3.84 16 9 C -0.04 -2.39 5.49 84.83 0.47 -1.92 16 10 N -0.94 -59.91 13.67 21.61 0.30 -59.62 16 11 Si 1.00 45.25 29.55 68.60 2.03 47.28 16 12 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 13 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 14 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 15 C 0.05 1.89 8.19 72.29 0.59 2.48 16 16 O -0.40 -16.43 12.39 -148.98 -1.85 -18.27 16 17 C 0.05 1.87 8.01 72.30 0.58 2.45 16 18 H 0.05 1.26 6.61 -2.39 -0.02 1.24 16 19 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 20 H 0.05 1.27 8.12 -2.39 -0.02 1.25 16 21 H 0.09 2.13 8.06 -2.39 -0.02 2.12 16 22 H 0.06 1.29 6.62 -2.39 -0.02 1.27 16 23 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 24 H 0.05 1.22 7.04 -2.39 -0.02 1.20 16 25 H 0.04 1.47 6.68 -2.39 -0.02 1.46 16 26 H 0.03 1.31 7.08 -2.38 -0.02 1.29 16 27 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 28 H 0.06 2.66 7.37 -2.39 -0.02 2.65 16 29 H 0.11 3.44 8.07 -2.38 -0.02 3.42 16 30 H 0.11 3.47 6.60 -2.39 -0.02 3.46 16 31 H 0.05 2.62 7.37 -2.39 -0.02 2.60 16 Total: -1.00 -70.14 253.65 4.79 -65.35 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 1.10 Total: 10.38 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 3.86 Total: -25.72 kcal Atomic # 7 Polarization: -59.91 SS G_CDS: 0.30 Total: -59.62 kcal Atomic # 8 Polarization: -35.18 SS G_CDS: -2.49 Total: -37.66 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -70.14 4.79 -65.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261004785.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.990 kcal (2) G-P(sol) polarization free energy of solvation -70.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds