Wall clock time and date at job start Mon Mar 30 2020 03:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53006 * 109.46744 * 2 1 4 4 C 1.53002 * 109.47042 * 119.99747 * 2 1 3 5 5 C 1.50709 * 108.70771 * 298.46514 * 4 2 1 6 6 H 1.07998 * 119.99816 * 2.23441 * 5 4 2 7 7 C 1.37875 * 119.99882 * 182.24355 * 5 4 2 8 8 N 1.31518 * 119.99829 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99963 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47067 * 59.99944 * 9 7 5 11 11 H 1.48504 * 109.47381 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47299 * 299.99832 * 9 7 5 13 13 C 1.52333 * 108.86714 * 180.02562 * 4 2 1 14 14 C 1.54259 * 112.58419 * 239.17931 * 13 4 2 15 15 S 1.83961 * 102.75529 * 335.37527 * 14 13 4 16 16 C 1.54261 * 108.86897 * 56.92340 * 4 2 1 17 17 H 1.09000 * 109.46769 * 60.00561 * 1 2 3 18 18 H 1.09008 * 109.46610 * 180.02562 * 1 2 3 19 19 H 1.08996 * 109.47138 * 299.99866 * 1 2 3 20 20 H 1.08998 * 109.46987 * 239.99606 * 2 1 3 21 21 H 1.08993 * 109.46673 * 179.97438 * 3 2 1 22 22 H 1.09000 * 109.46405 * 299.99708 * 3 2 1 23 23 H 1.08998 * 109.47063 * 59.99640 * 3 2 1 24 24 H 0.97006 * 119.99538 * 180.02562 * 8 7 5 25 25 H 1.09000 * 108.86948 * 118.35914 * 13 4 2 26 26 H 1.09002 * 108.75442 * 359.91919 * 13 4 2 27 27 H 1.09002 * 110.78775 * 93.74433 * 14 13 4 28 28 H 1.09002 * 110.78868 * 217.00728 * 14 13 4 29 29 H 1.08999 * 110.78412 * 263.61982 * 16 4 2 30 30 H 1.08995 * 110.78348 * 27.07973 * 16 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.5597 0.0244 2.4678 6 1 0.9277 0.8928 2.3551 7 6 1.9274 -0.4021 3.7263 8 7 2.6969 -1.4599 3.8634 9 14 1.3327 0.5224 5.2366 10 1 -0.1519 0.5087 5.2726 11 1 1.8630 -0.1331 6.4590 12 1 1.8135 1.9262 5.1788 13 6 3.5633 -0.7126 1.2357 14 6 4.1639 -2.1334 1.2507 15 16 2.8264 -3.1317 2.0244 16 6 1.4553 -2.1484 1.2751 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0278 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 1.8934 -0.5139 -0.8899 21 1 3.1299 1.4426 0.0005 22 1 1.6766 1.9563 -0.8900 23 1 1.6766 1.9564 0.8899 24 1 2.9553 -1.7601 4.7489 25 1 3.9206 -0.1696 2.1107 26 1 3.9029 -0.1958 0.3381 27 1 4.3668 -2.4783 0.2368 28 1 5.0695 -2.1643 1.8566 29 1 0.5631 -2.1896 1.8999 30 1 1.2380 -2.4957 0.2650 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261112479.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:02 Heat of formation + Delta-G solvation = -1.276202 kcal Electronic energy + Delta-G solvation = -11987.784409 eV Core-core repulsion = 10102.269309 eV Total energy + Delta-G solvation = -1885.515100 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -37.58166 -32.45621 -31.10545 -28.22346 -26.41490 -24.87814 -22.99780 -20.54282 -18.45270 -15.76041 -15.09486 -14.57128 -13.78401 -13.53803 -13.06766 -12.73261 -12.09514 -11.84285 -11.38472 -11.25456 -10.92934 -10.74178 -10.65193 -10.47577 -10.36238 -10.06159 -9.97787 -9.48062 -9.19808 -8.63051 -8.26036 -8.17440 -6.70721 -4.63426 -3.75594 3.38976 3.46177 3.46919 3.50953 3.87795 4.57826 5.46132 5.85508 5.92103 5.98627 6.10944 6.23018 6.41218 6.46709 6.49927 6.60280 6.63274 6.74029 6.80697 6.90471 7.00060 7.15702 7.19248 7.28087 7.54659 7.88190 8.07273 8.52861 9.05155 9.75745 11.21375 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.027017 B = 0.021274 C = 0.014805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.152320 B = 1315.838089 C = 1890.824412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.078 4.078 3 C -0.135 4.135 4 C 0.075 3.925 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.067 3.933 8 N -0.815 5.815 9 Si 0.863 3.137 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.282 1.282 13 C -0.090 4.090 14 C -0.057 4.057 15 S -0.253 6.253 16 C -0.035 4.035 17 H 0.029 0.971 18 H 0.045 0.955 19 H 0.063 0.937 20 H 0.039 0.961 21 H 0.047 0.953 22 H 0.028 0.972 23 H 0.064 0.936 24 H 0.251 0.749 25 H 0.076 0.924 26 H 0.032 0.968 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.025 0.866 -5.625 5.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.098 4.098 3 C -0.192 4.192 4 C 0.074 3.926 5 C -0.568 4.568 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.451 5.451 9 Si 0.691 3.309 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.208 1.208 13 C -0.129 4.129 14 C -0.206 4.206 15 S -0.025 6.025 16 C -0.184 4.184 17 H 0.048 0.952 18 H 0.064 0.936 19 H 0.082 0.918 20 H 0.058 0.942 21 H 0.066 0.934 22 H 0.047 0.953 23 H 0.083 0.917 24 H 0.063 0.937 25 H 0.095 0.905 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.175 -0.296 -4.715 4.728 hybrid contribution -0.345 1.545 0.324 1.616 sum -0.170 1.249 -4.392 4.569 Atomic orbital electron populations 1.21787 0.96420 1.00762 1.00309 1.21188 0.95065 0.95856 0.97689 1.21818 1.00324 0.96841 1.00267 1.18648 0.90396 0.90430 0.93151 1.20854 1.33078 1.13511 0.89388 0.92494 1.25386 0.95968 0.94268 0.98341 1.71479 1.33339 1.19287 1.20965 0.87151 0.78951 0.80312 0.84467 1.20842 1.21695 1.20779 1.22069 0.96995 0.93664 1.00208 1.23801 0.99077 0.98678 0.99029 1.86688 1.03709 1.39661 1.72445 1.24293 0.98251 0.98054 0.97755 0.95218 0.93575 0.91772 0.94240 0.93435 0.95331 0.91676 0.93686 0.90509 0.94952 0.93054 0.90748 0.89975 0.93944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.66 37.16 0.32 -2.17 16 2 C -0.08 -1.54 1.90 -90.61 -0.17 -1.71 16 3 C -0.14 -2.50 8.63 37.16 0.32 -2.18 16 4 C 0.08 1.70 0.34 -155.34 -0.05 1.65 16 5 C -0.53 -13.34 6.01 -34.44 -0.21 -13.55 16 6 H 0.06 1.45 5.56 -52.49 -0.29 1.16 16 7 C 0.07 1.76 4.82 -17.82 -0.09 1.68 16 8 N -0.82 -21.82 8.02 55.43 0.44 -21.38 16 9 Si 0.86 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 13 C -0.09 -2.02 4.45 -26.41 -0.12 -2.13 16 14 C -0.06 -1.22 7.34 37.82 0.28 -0.95 16 15 S -0.25 -5.99 19.62 -107.50 -2.11 -8.10 16 16 C -0.03 -0.79 4.90 37.82 0.19 -0.61 16 17 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 18 H 0.05 0.83 6.87 -51.92 -0.36 0.47 16 19 H 0.06 1.26 6.61 -51.93 -0.34 0.92 16 20 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 21 H 0.05 0.86 6.38 -51.93 -0.33 0.53 16 22 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 1.29 6.50 -51.93 -0.34 0.96 16 24 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 25 H 0.08 1.92 6.75 -51.93 -0.35 1.57 16 26 H 0.03 0.65 6.06 -51.93 -0.31 0.34 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 29 H 0.08 2.01 7.79 -51.93 -0.40 1.61 16 30 H 0.04 0.89 7.53 -51.93 -0.39 0.50 16 LS Contribution 234.61 15.07 3.54 3.54 Total: -1.00 -26.14 234.61 -7.05 -33.19 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -4.37 Total: -2.97 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 0.47 Total: -19.97 kcal Atomic # 7 Polarization: -21.82 SS G_CDS: 0.44 Total: -21.38 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 16 Polarization: -5.99 SS G_CDS: -2.11 Total: -8.10 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -26.14 -7.05 -33.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112479.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.918 kcal (2) G-P(sol) polarization free energy of solvation -26.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds