Wall clock time and date at job start Mon Mar 30 2020 03:02:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53006 * 109.46744 * 2 1 4 4 C 1.53002 * 109.47042 * 119.99747 * 2 1 3 5 5 C 1.50709 * 108.70771 * 298.46514 * 4 2 1 6 6 H 1.07998 * 119.99816 * 2.23441 * 5 4 2 7 7 C 1.37875 * 119.99882 * 182.24355 * 5 4 2 8 8 N 1.31518 * 119.99829 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99963 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47067 * 59.99944 * 9 7 5 11 11 H 1.48504 * 109.47381 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47299 * 299.99832 * 9 7 5 13 13 C 1.52333 * 108.86714 * 180.02562 * 4 2 1 14 14 C 1.54259 * 112.58419 * 239.17931 * 13 4 2 15 15 S 1.83961 * 102.75529 * 335.37527 * 14 13 4 16 16 C 1.54261 * 108.86897 * 56.92340 * 4 2 1 17 17 H 1.09000 * 109.46769 * 60.00561 * 1 2 3 18 18 H 1.09008 * 109.46610 * 180.02562 * 1 2 3 19 19 H 1.08996 * 109.47138 * 299.99866 * 1 2 3 20 20 H 1.08998 * 109.46987 * 239.99606 * 2 1 3 21 21 H 1.08993 * 109.46673 * 179.97438 * 3 2 1 22 22 H 1.09000 * 109.46405 * 299.99708 * 3 2 1 23 23 H 1.08998 * 109.47063 * 59.99640 * 3 2 1 24 24 H 0.97006 * 119.99538 * 180.02562 * 8 7 5 25 25 H 1.09000 * 108.86948 * 118.35914 * 13 4 2 26 26 H 1.09002 * 108.75442 * 359.91919 * 13 4 2 27 27 H 1.09002 * 110.78775 * 93.74433 * 14 13 4 28 28 H 1.09002 * 110.78868 * 217.00728 * 14 13 4 29 29 H 1.08999 * 110.78412 * 263.61982 * 16 4 2 30 30 H 1.08995 * 110.78348 * 27.07973 * 16 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.5597 0.0244 2.4678 6 1 0.9277 0.8928 2.3551 7 6 1.9274 -0.4021 3.7263 8 7 2.6969 -1.4599 3.8634 9 14 1.3327 0.5224 5.2366 10 1 -0.1519 0.5087 5.2726 11 1 1.8630 -0.1331 6.4590 12 1 1.8135 1.9262 5.1788 13 6 3.5633 -0.7126 1.2357 14 6 4.1639 -2.1334 1.2507 15 16 2.8264 -3.1317 2.0244 16 6 1.4553 -2.1484 1.2751 17 1 -0.3633 0.5138 -0.8900 18 1 -0.3633 -1.0278 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 1.8934 -0.5139 -0.8899 21 1 3.1299 1.4426 0.0005 22 1 1.6766 1.9563 -0.8900 23 1 1.6766 1.9564 0.8899 24 1 2.9553 -1.7601 4.7489 25 1 3.9206 -0.1696 2.1107 26 1 3.9029 -0.1958 0.3381 27 1 4.3668 -2.4783 0.2368 28 1 5.0695 -2.1643 1.8566 29 1 0.5631 -2.1896 1.8999 30 1 1.2380 -2.4957 0.2650 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261112479.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:00 Heat of formation + Delta-G solvation = -14.092141 kcal Electronic energy + Delta-G solvation = -11988.340150 eV Core-core repulsion = 10102.269309 eV Total energy + Delta-G solvation = -1886.070841 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.29179 -34.24685 -32.90311 -29.95555 -28.01529 -26.72293 -24.74644 -22.17232 -20.26145 -17.61911 -16.87707 -16.48424 -15.57888 -15.21647 -14.72109 -14.45539 -13.77333 -13.57137 -13.14044 -12.78030 -12.71102 -12.58124 -12.48328 -12.15415 -12.12431 -11.90186 -11.65070 -11.13517 -10.93764 -10.43097 -10.23706 -9.96585 -8.62473 -6.58493 -5.74776 1.44821 1.50016 1.52334 1.71250 2.09552 2.59334 3.45819 4.27668 4.33648 4.43632 4.47661 4.56821 4.75588 4.83040 4.96199 5.00505 5.04390 5.07672 5.25589 5.28566 5.38191 5.46807 5.65674 5.68343 5.84400 6.03679 6.12474 6.61475 7.07016 7.74118 9.17598 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.027017 B = 0.021274 C = 0.014805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.152320 B = 1315.838089 C = 1890.824412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.079 4.079 3 C -0.130 4.130 4 C 0.067 3.933 5 C -0.528 4.528 6 H 0.050 0.950 7 C 0.029 3.971 8 N -0.827 5.827 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.298 1.298 12 H -0.282 1.282 13 C -0.086 4.086 14 C -0.045 4.045 15 S -0.299 6.299 16 C -0.023 4.023 17 H 0.057 0.943 18 H 0.045 0.955 19 H 0.043 0.957 20 H 0.056 0.944 21 H 0.047 0.953 22 H 0.055 0.945 23 H 0.043 0.957 24 H 0.241 0.759 25 H 0.044 0.956 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.030 1.357 -7.302 7.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.098 4.098 3 C -0.188 4.188 4 C 0.066 3.934 5 C -0.567 4.567 6 H 0.068 0.932 7 C -0.176 4.176 8 N -0.464 5.464 9 Si 0.735 3.265 10 H -0.212 1.212 11 H -0.224 1.224 12 H -0.208 1.208 13 C -0.125 4.125 14 C -0.193 4.193 15 S -0.072 6.072 16 C -0.172 4.172 17 H 0.076 0.924 18 H 0.064 0.936 19 H 0.062 0.938 20 H 0.075 0.925 21 H 0.066 0.934 22 H 0.074 0.926 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.074 0.926 27 H 0.100 0.900 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.174 0.208 -6.393 6.398 hybrid contribution -0.360 1.426 0.819 1.683 sum -0.186 1.634 -5.574 5.811 Atomic orbital electron populations 1.21728 0.95619 1.00861 1.00663 1.21187 0.95804 0.96279 0.96575 1.21749 1.00295 0.96126 1.00596 1.18723 0.90705 0.90301 0.93700 1.21094 1.32062 1.13114 0.90401 0.93198 1.25825 0.96683 0.95046 1.00064 1.71648 1.34318 1.20108 1.20333 0.86469 0.78145 0.79378 0.82459 1.21210 1.22424 1.20791 1.21949 0.96725 0.94066 0.99766 1.23846 0.97821 0.97423 1.00250 1.86835 1.05838 1.40753 1.73729 1.24206 0.96772 0.98056 0.98130 0.92450 0.93633 0.93805 0.92532 0.93408 0.92560 0.93767 0.94735 0.93756 0.92584 0.90033 0.90823 0.92370 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 8.66 71.99 0.62 -3.87 16 2 C -0.08 -2.86 1.90 -10.79 -0.02 -2.88 16 3 C -0.13 -4.45 8.63 71.98 0.62 -3.82 16 4 C 0.07 2.93 0.34 -52.72 -0.02 2.92 16 5 C -0.53 -26.35 6.01 25.60 0.15 -26.20 16 6 H 0.05 2.53 5.56 -2.91 -0.02 2.51 16 7 C 0.03 1.50 4.82 84.65 0.41 1.91 16 8 N -0.83 -44.61 8.02 21.45 0.17 -44.44 16 9 Si 0.91 42.96 29.54 68.60 2.03 44.99 16 10 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 11 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 12 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 13 C -0.09 -3.68 4.45 30.80 0.14 -3.55 16 14 C -0.05 -1.84 7.34 72.41 0.53 -1.30 16 15 S -0.30 -13.94 19.62 -56.49 -1.11 -15.05 16 16 C -0.02 -1.02 4.90 72.41 0.35 -0.66 16 17 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 18 H 0.04 1.53 6.87 -2.38 -0.02 1.52 16 19 H 0.04 1.66 6.61 -2.39 -0.02 1.64 16 20 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 21 H 0.05 1.60 6.38 -2.39 -0.02 1.58 16 22 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.04 1.67 6.50 -2.39 -0.02 1.66 16 24 H 0.24 13.15 8.31 -92.70 -0.77 12.38 16 25 H 0.04 2.17 6.75 -2.39 -0.02 2.15 16 26 H 0.06 2.11 6.06 -2.39 -0.01 2.09 16 27 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 28 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.06 2.83 7.79 -2.39 -0.02 2.81 16 30 H 0.06 2.56 7.53 -2.39 -0.02 2.54 16 Total: -1.00 -54.26 234.61 4.99 -49.28 By element: Atomic # 1 Polarization: 1.57 SS G_CDS: 1.11 Total: 2.68 kcal Atomic # 6 Polarization: -40.25 SS G_CDS: 2.79 Total: -37.46 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.17 Total: -44.44 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Atomic # 16 Polarization: -13.94 SS G_CDS: -1.11 Total: -15.05 kcal Total: -54.26 4.99 -49.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112479.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.185 kcal (2) G-P(sol) polarization free energy of solvation -54.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds