Wall clock time and date at job start Mon Mar 30 2020 03:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47050 * 2 1 4 4 C 1.53000 * 109.46835 * 120.00208 * 2 1 3 5 5 C 1.50693 * 108.82876 * 59.29838 * 4 2 1 6 6 H 1.08003 * 120.00004 * 263.10062 * 5 4 2 7 7 C 1.37881 * 120.00243 * 83.10662 * 5 4 2 8 8 N 1.31510 * 120.00384 * 170.10751 * 7 5 4 9 9 Si 1.86797 * 119.99788 * 349.83426 * 7 5 4 10 10 H 1.48501 * 109.47355 * 95.04650 * 9 7 5 11 11 H 1.48502 * 109.47275 * 215.04818 * 9 7 5 12 12 H 1.48509 * 109.47308 * 335.04592 * 9 7 5 13 13 C 1.52333 * 108.86531 * 177.82968 * 4 2 1 14 14 C 1.54258 * 112.58761 * 120.67325 * 13 4 2 15 15 S 1.83953 * 102.58248 * 24.52909 * 14 13 4 16 16 C 1.54259 * 108.75261 * 300.83074 * 4 2 1 17 17 H 1.09008 * 109.47182 * 59.99606 * 1 2 3 18 18 H 1.08998 * 109.47538 * 180.02562 * 1 2 3 19 19 H 1.08999 * 109.47156 * 299.99929 * 1 2 3 20 20 H 1.08999 * 109.47156 * 240.00071 * 2 1 3 21 21 H 1.08997 * 109.46533 * 180.02562 * 3 2 1 22 22 H 1.08994 * 109.47310 * 299.99678 * 3 2 1 23 23 H 1.08999 * 109.47083 * 60.00026 * 3 2 1 24 24 H 0.96998 * 120.00454 * 179.72574 * 8 7 5 25 25 H 1.08999 * 108.86631 * 241.49525 * 13 4 2 26 26 H 1.08999 * 108.87173 * 359.85226 * 13 4 2 27 27 H 1.09007 * 110.78299 * 142.80126 * 14 13 4 28 28 H 1.08998 * 110.79051 * 266.06183 * 14 13 4 29 29 H 1.09000 * 110.79098 * 333.00579 * 16 4 2 30 30 H 1.08997 * 110.78436 * 96.46010 * 16 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5154 -2.1340 1.2433 6 1 0.6276 -2.3828 1.8057 7 6 2.1690 -3.1090 0.5199 8 7 1.8332 -4.3722 0.6657 9 14 3.5262 -2.6351 -0.6728 10 1 4.8432 -2.7546 0.0029 11 1 3.4897 -3.5404 -1.8494 12 1 3.3248 -1.2334 -1.1204 13 6 3.5622 -0.7607 1.2083 14 6 4.2058 -0.0638 2.4247 15 16 2.8821 -0.1752 3.6972 16 6 1.4994 0.0064 2.4974 17 1 -0.3634 0.5139 -0.8900 18 1 -0.3634 -1.0276 0.0005 19 1 -0.3633 0.5138 0.8900 20 1 1.8933 -0.5138 -0.8900 21 1 3.1300 1.4424 -0.0005 22 1 1.6767 1.9563 -0.8900 23 1 1.6766 1.9563 0.8900 24 1 2.2903 -5.0577 0.1538 25 1 3.8873 -1.8008 1.1851 26 1 3.9033 -0.2675 0.2982 27 1 5.0994 -0.5977 2.7483 28 1 4.4400 0.9758 2.1958 29 1 1.3107 1.0578 2.2808 30 1 0.5981 -0.4809 2.8692 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261112480.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:04 Heat of formation + Delta-G solvation = 3.672974 kcal Electronic energy + Delta-G solvation = -12014.052154 eV Core-core repulsion = 10128.751667 eV Total energy + Delta-G solvation = -1885.300488 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.22862 -32.51494 -31.79382 -28.68401 -26.59975 -26.11782 -22.95764 -21.04594 -18.47920 -16.32928 -15.90955 -15.12229 -14.66796 -13.77022 -13.17182 -13.02450 -12.44920 -12.39206 -12.13976 -11.63168 -11.48406 -11.09334 -10.98159 -10.62869 -10.43747 -10.15263 -9.98745 -9.57489 -9.16562 -8.92035 -8.85101 -8.42267 -6.91685 -6.10725 -4.07000 2.68960 3.11253 3.21722 3.26707 3.37165 4.32691 5.10098 5.41763 5.54964 5.66174 5.69605 5.85597 5.98358 6.04668 6.17245 6.23677 6.28330 6.35192 6.45824 6.55064 6.57463 6.68527 6.99037 7.12029 7.27403 7.28014 7.72058 8.46343 8.91473 9.50365 11.01471 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.029650 B = 0.019821 C = 0.016879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.119998 B = 1412.323361 C = 1658.429047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.097 4.097 3 C -0.153 4.153 4 C 0.050 3.950 5 C -0.495 4.495 6 H 0.077 0.923 7 C 0.069 3.931 8 N -0.893 5.893 9 Si 0.874 3.126 10 H -0.288 1.288 11 H -0.303 1.303 12 H -0.244 1.244 13 C -0.145 4.145 14 C -0.054 4.054 15 S -0.329 6.329 16 C -0.031 4.031 17 H 0.031 0.969 18 H 0.071 0.929 19 H 0.041 0.959 20 H 0.072 0.928 21 H 0.046 0.954 22 H 0.041 0.959 23 H 0.051 0.949 24 H 0.263 0.737 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.055 9.571 -1.097 9.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.117 4.117 3 C -0.211 4.211 4 C 0.048 3.952 5 C -0.533 4.533 6 H 0.095 0.905 7 C -0.132 4.132 8 N -0.531 5.531 9 Si 0.706 3.294 10 H -0.215 1.215 11 H -0.232 1.232 12 H -0.170 1.170 13 C -0.183 4.183 14 C -0.202 4.202 15 S -0.102 6.102 16 C -0.179 4.179 17 H 0.050 0.950 18 H 0.090 0.910 19 H 0.060 0.940 20 H 0.090 0.910 21 H 0.065 0.935 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.073 0.927 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.107 0.893 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.113 9.228 0.093 9.468 hybrid contribution 0.830 0.143 -1.853 2.036 sum 2.944 9.372 -1.761 9.980 Atomic orbital electron populations 1.21713 0.95711 1.02510 0.99002 1.21709 0.95967 0.93699 1.00307 1.22065 1.00457 0.98104 1.00430 1.18974 0.89648 0.96608 0.89982 1.20850 1.12829 0.89414 1.30168 0.90519 1.25060 0.96809 0.94742 0.96613 1.69907 1.42627 0.99739 1.40793 0.87423 0.82269 0.79181 0.80501 1.21538 1.23190 1.16972 1.22923 0.97751 1.01385 0.96255 1.23975 0.98282 1.02372 0.95600 1.87399 1.06523 1.97324 1.18976 1.24426 0.97102 1.01566 0.94792 0.94959 0.91038 0.93952 0.90960 0.93465 0.93982 0.92998 0.92689 0.90009 0.91832 0.89272 0.90580 0.90904 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 8.67 37.16 0.32 -2.09 16 2 C -0.10 -1.88 1.81 -90.62 -0.16 -2.05 16 3 C -0.15 -2.50 8.69 37.16 0.32 -2.17 16 4 C 0.05 1.08 0.18 -155.35 -0.03 1.05 16 5 C -0.49 -12.96 7.16 -34.44 -0.25 -13.20 16 6 H 0.08 2.22 7.70 -52.48 -0.40 1.81 16 7 C 0.07 1.91 5.16 -17.82 -0.09 1.82 16 8 N -0.89 -26.65 13.96 55.43 0.77 -25.87 16 9 Si 0.87 20.78 22.76 -169.99 -3.87 16.92 16 10 H -0.29 -6.80 6.78 56.52 0.38 -6.42 16 11 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 12 H -0.24 -5.27 3.95 56.52 0.22 -5.04 16 13 C -0.15 -3.04 2.99 -26.41 -0.08 -3.12 16 14 C -0.05 -0.99 7.46 37.82 0.28 -0.71 16 15 S -0.33 -6.65 23.27 -107.50 -2.50 -9.15 16 16 C -0.03 -0.62 5.00 37.82 0.19 -0.43 16 17 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 18 H 0.07 1.46 7.16 -51.93 -0.37 1.09 16 19 H 0.04 0.71 7.00 -51.93 -0.36 0.35 16 20 H 0.07 1.52 4.85 -51.93 -0.25 1.27 16 21 H 0.05 0.75 6.52 -51.93 -0.34 0.41 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.80 6.01 -51.93 -0.31 0.48 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.08 1.94 3.56 -51.93 -0.18 1.75 16 26 H 0.06 1.25 4.52 -51.93 -0.23 1.01 16 27 H 0.09 1.54 8.14 -51.92 -0.42 1.12 16 28 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 29 H 0.07 1.28 5.45 -51.93 -0.28 1.00 16 30 H 0.09 1.96 7.56 -51.93 -0.39 1.57 16 LS Contribution 226.17 15.07 3.41 3.41 Total: -1.00 -28.23 226.17 -5.84 -34.07 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -4.16 Total: 1.53 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: 0.51 Total: -20.90 kcal Atomic # 7 Polarization: -26.65 SS G_CDS: 0.77 Total: -25.87 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -3.87 Total: 16.92 kcal Atomic # 16 Polarization: -6.65 SS G_CDS: -2.50 Total: -9.15 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -28.23 -5.84 -34.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261112480.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.744 kcal (2) G-P(sol) polarization free energy of solvation -28.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds