Wall clock time and date at job start Mon Mar 30 2020 01:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47711 * 2 1 4 4 C 1.50697 * 109.47323 * 239.99128 * 2 1 3 5 5 H 1.08002 * 120.00599 * 240.00782 * 4 2 1 6 6 C 1.37880 * 119.99675 * 60.00315 * 4 2 1 7 7 N 1.31517 * 120.00210 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00019 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46845 * 269.99914 * 8 6 4 10 10 H 1.48503 * 109.47399 * 29.99403 * 8 6 4 11 11 H 1.48498 * 109.47295 * 150.00010 * 8 6 4 12 12 C 1.50707 * 109.46640 * 119.99870 * 2 1 3 13 13 C 1.39860 * 126.05252 * 59.68999 * 12 2 1 14 14 N 1.30840 * 108.22063 * 179.81794 * 13 12 2 15 15 N 1.40083 * 108.22997 * 0.43908 * 14 13 12 16 16 H 0.97000 * 126.02659 * 179.72262 * 15 14 13 17 17 C 1.34982 * 107.93466 * 359.71875 * 15 14 13 18 18 Cl 1.73594 * 126.14459 * 180.02562 * 17 15 14 19 19 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47206 * 300.00454 * 1 2 3 21 21 H 1.09006 * 109.46667 * 60.00472 * 1 2 3 22 22 H 0.96998 * 119.99640 * 180.02562 * 7 6 4 23 23 H 1.08002 * 125.88783 * 359.96410 * 13 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 2.1381 -0.8594 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8019 0.8743 -2.6994 10 1 0.8492 2.1772 -1.4924 11 1 0.9773 1.9950 -3.9072 12 6 2.0322 -0.7104 1.2306 13 6 1.7685 -2.0389 1.5793 14 7 2.3774 -2.2940 2.7089 15 7 3.0411 -1.1313 3.1213 16 1 3.5703 -1.0321 3.9282 17 6 2.8142 -0.1735 2.1976 18 17 3.4170 1.4539 2.2409 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 1.9041 -0.5278 -4.4374 23 1 1.1679 -2.7350 1.0125 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261113715.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:41 Heat of formation + Delta-G solvation = 65.756133 kcal Electronic energy + Delta-G solvation = -10758.612372 eV Core-core repulsion = 8634.586868 eV Total energy + Delta-G solvation = -2124.025504 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.041 amu Computer time = 3.02 seconds Orbital eigenvalues (eV) -40.73691 -36.43743 -34.63751 -31.66456 -30.67191 -28.33285 -24.98728 -21.91877 -21.59993 -19.34014 -17.39507 -16.42352 -14.84780 -14.37490 -14.29199 -13.40655 -13.03473 -12.65790 -12.14266 -11.64967 -11.55219 -11.17250 -10.92413 -10.50735 -10.30965 -9.83914 -9.41694 -9.12352 -9.06264 -8.53511 -7.76965 -6.03619 -4.02651 1.92015 2.12736 3.28962 3.32175 3.41660 3.43763 3.50575 4.44344 5.21199 5.31011 5.88360 6.03766 6.19035 6.43795 6.63153 6.72905 7.02543 7.13241 7.42381 7.49819 7.76110 7.99276 8.56131 9.00886 9.58032 11.09440 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.040564 B = 0.013111 C = 0.011551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.108556 B = 2135.031879 C = 2423.456936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.070 3.930 3 H 0.039 0.961 4 C -0.505 4.505 5 H 0.075 0.925 6 C 0.071 3.929 7 N -0.901 5.901 8 Si 0.885 3.115 9 H -0.279 1.279 10 H -0.265 1.265 11 H -0.299 1.299 12 C -0.141 4.141 13 C 0.073 3.927 14 N -0.288 5.288 15 N -0.484 5.484 16 H 0.433 0.567 17 C 0.097 3.903 18 Cl -0.018 7.018 19 H 0.053 0.947 20 H 0.029 0.971 21 H 0.041 0.959 22 H 0.263 0.737 23 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.391 3.100 10.969 11.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.050 3.950 3 H 0.057 0.943 4 C -0.543 4.543 5 H 0.093 0.907 6 C -0.130 4.130 7 N -0.539 5.539 8 Si 0.716 3.284 9 H -0.206 1.206 10 H -0.190 1.190 11 H -0.226 1.226 12 C -0.152 4.152 13 C -0.113 4.113 14 N -0.112 5.112 15 N -0.197 5.197 16 H 0.277 0.723 17 C -0.055 4.055 18 Cl 0.010 6.990 19 H 0.073 0.927 20 H 0.048 0.952 21 H 0.059 0.941 22 H 0.073 0.927 23 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -0.105 2.377 11.631 11.872 hybrid contribution -0.306 1.599 -0.445 1.688 sum -0.411 3.976 11.186 11.879 Atomic orbital electron populations 1.22128 0.98475 1.00859 0.98499 1.17772 0.91554 0.95822 0.89839 0.94301 1.20935 1.31853 1.13506 0.88012 0.90673 1.24971 0.95738 0.96545 0.95785 1.69891 1.45712 1.40394 0.97898 0.86885 0.80633 0.83987 0.76936 1.20573 1.18989 1.22633 1.20180 1.02437 0.94642 0.97987 1.23742 0.98495 0.96098 0.92973 1.77352 1.13911 1.03614 1.16304 1.46196 1.44581 1.07704 1.21177 0.72319 1.21369 1.03995 0.85176 0.94910 1.98365 1.86969 1.15625 1.98061 0.92742 0.95216 0.94078 0.92680 0.79305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.56 37.16 0.32 -2.69 14 2 C 0.07 1.62 2.24 -92.92 -0.21 1.41 14 3 H 0.04 0.92 6.44 -51.93 -0.33 0.59 14 4 C -0.51 -13.81 9.00 -34.44 -0.31 -14.12 14 5 H 0.08 2.24 7.98 -52.49 -0.42 1.83 14 6 C 0.07 2.01 5.45 -17.82 -0.10 1.91 14 7 N -0.90 -27.18 13.96 55.43 0.77 -26.40 14 8 Si 0.89 21.61 24.37 -169.99 -4.14 17.46 14 9 H -0.28 -6.60 6.87 56.52 0.39 -6.21 14 10 H -0.26 -6.19 6.53 56.52 0.37 -5.82 14 11 H -0.30 -7.35 7.11 56.52 0.40 -6.95 14 12 C -0.14 -2.89 4.75 -105.00 -0.50 -3.39 14 13 C 0.07 1.39 11.52 -17.37 -0.20 1.19 14 14 N -0.29 -5.18 12.70 30.62 0.39 -4.79 14 15 N -0.48 -7.76 7.36 32.76 0.24 -7.52 14 16 H 0.43 5.28 8.96 -182.61 -1.64 3.65 14 17 C 0.10 1.76 7.82 -17.16 -0.13 1.63 14 18 Cl -0.02 -0.29 28.53 -51.86 -1.48 -1.77 14 19 H 0.05 1.09 8.02 -51.93 -0.42 0.67 14 20 H 0.03 0.55 8.14 -51.93 -0.42 0.13 14 21 H 0.04 0.91 3.27 -51.93 -0.17 0.74 14 22 H 0.26 7.48 8.31 -40.82 -0.34 7.14 14 23 H 0.19 3.30 8.06 -52.49 -0.42 2.88 14 LS Contribution 215.94 15.07 3.25 3.25 Total: -1.00 -30.10 215.94 -5.10 -35.19 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -3.00 Total: -1.37 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: -1.13 Total: -14.06 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 1.40 Total: -38.71 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.14 Total: 17.46 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.48 Total: -1.77 kcal Total LS contribution 3.25 Total: 3.25 kcal Total: -30.10 -5.10 -35.19 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261113715.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.950 kcal (2) G-P(sol) polarization free energy of solvation -30.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.02 seconds