Wall clock time and date at job start Mon Mar 30 2020 01:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47711 * 2 1 4 4 C 1.50697 * 109.47323 * 239.99128 * 2 1 3 5 5 H 1.08002 * 120.00599 * 240.00782 * 4 2 1 6 6 C 1.37880 * 119.99675 * 60.00315 * 4 2 1 7 7 N 1.31517 * 120.00210 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 120.00019 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46845 * 269.99914 * 8 6 4 10 10 H 1.48503 * 109.47399 * 29.99403 * 8 6 4 11 11 H 1.48498 * 109.47295 * 150.00010 * 8 6 4 12 12 C 1.50707 * 109.46640 * 119.99870 * 2 1 3 13 13 C 1.39860 * 126.05252 * 59.68999 * 12 2 1 14 14 N 1.30840 * 108.22063 * 179.81794 * 13 12 2 15 15 N 1.40083 * 108.22997 * 0.43908 * 14 13 12 16 16 H 0.97000 * 126.02659 * 179.72262 * 15 14 13 17 17 C 1.34982 * 107.93466 * 359.71875 * 15 14 13 18 18 Cl 1.73594 * 126.14459 * 180.02562 * 17 15 14 19 19 H 1.09000 * 109.47280 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47206 * 300.00454 * 1 2 3 21 21 H 1.09006 * 109.46667 * 60.00472 * 1 2 3 22 22 H 0.96998 * 119.99640 * 180.02562 * 7 6 4 23 23 H 1.08002 * 125.88783 * 359.96410 * 13 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 2.1381 -0.8594 -3.5564 8 14 0.6260 1.2796 -2.6542 9 1 -0.8019 0.8743 -2.6994 10 1 0.8492 2.1772 -1.4924 11 1 0.9773 1.9950 -3.9072 12 6 2.0322 -0.7104 1.2306 13 6 1.7685 -2.0389 1.5793 14 7 2.3774 -2.2940 2.7089 15 7 3.0411 -1.1313 3.1213 16 1 3.5703 -1.0321 3.9282 17 6 2.8142 -0.1735 2.1976 18 17 3.4170 1.4539 2.2409 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 1.9041 -0.5278 -4.4374 23 1 1.1679 -2.7350 1.0125 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261113715.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:33 Heat of formation + Delta-G solvation = 44.783684 kcal Electronic energy + Delta-G solvation = -10759.521806 eV Core-core repulsion = 8634.586868 eV Total energy + Delta-G solvation = -2124.934938 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.041 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.18383 -37.79911 -36.46217 -33.66207 -32.14302 -29.89503 -26.97406 -23.64555 -23.05076 -20.88533 -19.03849 -18.35016 -16.68148 -15.88919 -15.80267 -15.05344 -14.85033 -14.35385 -13.92203 -13.13538 -12.98775 -12.98010 -12.66353 -12.21226 -11.96090 -11.57375 -11.23388 -11.05888 -10.66144 -10.47852 -9.30209 -8.20012 -6.22858 0.51402 0.69070 1.38826 1.44686 1.54706 1.78132 2.22382 2.41189 3.16237 3.75140 4.38905 4.48636 4.56512 4.83071 4.97205 5.09532 5.29235 5.55466 5.73406 5.76600 6.18208 6.40283 6.58597 6.83169 7.41485 8.96639 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.040564 B = 0.013111 C = 0.011551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.108556 B = 2135.031879 C = 2423.456936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.074 3.926 3 H 0.035 0.965 4 C -0.501 4.501 5 H 0.034 0.966 6 C 0.014 3.986 7 N -0.951 5.951 8 Si 0.944 3.056 9 H -0.265 1.265 10 H -0.245 1.245 11 H -0.304 1.304 12 C -0.177 4.177 13 C 0.065 3.935 14 N -0.290 5.290 15 N -0.463 5.463 16 H 0.452 0.548 17 C 0.108 3.892 18 Cl 0.003 6.997 19 H 0.058 0.942 20 H 0.057 0.943 21 H 0.032 0.968 22 H 0.264 0.736 23 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.029 4.345 12.612 13.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.054 3.946 3 H 0.053 0.947 4 C -0.540 4.540 5 H 0.053 0.947 6 C -0.182 4.182 7 N -0.592 5.592 8 Si 0.771 3.229 9 H -0.191 1.191 10 H -0.168 1.168 11 H -0.232 1.232 12 C -0.189 4.189 13 C -0.120 4.120 14 N -0.114 5.114 15 N -0.178 5.178 16 H 0.299 0.701 17 C -0.046 4.046 18 Cl 0.031 6.969 19 H 0.077 0.923 20 H 0.076 0.924 21 H 0.051 0.949 22 H 0.073 0.927 23 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -0.738 3.615 13.331 13.832 hybrid contribution 0.007 1.174 -0.869 1.461 sum -0.731 4.789 12.462 13.370 Atomic orbital electron populations 1.22060 0.96766 1.01576 0.99382 1.17597 0.92947 0.95080 0.88957 0.94652 1.21185 1.30501 1.12206 0.90072 0.94749 1.25790 0.97315 0.99748 0.95389 1.70046 1.47987 1.42636 0.98548 0.85923 0.79364 0.80411 0.77172 1.19073 1.16846 1.23235 1.20033 1.04906 0.95581 0.98397 1.23852 0.98930 0.95890 0.93376 1.77327 1.13951 1.04201 1.15935 1.46191 1.43636 1.06663 1.21293 0.70068 1.21380 1.02612 0.86178 0.94453 1.98377 1.86554 1.13978 1.97983 0.92300 0.92362 0.94923 0.92725 0.78731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.60 8.56 71.98 0.62 -4.98 14 2 C 0.07 3.32 2.24 -12.28 -0.03 3.29 14 3 H 0.04 1.60 6.44 -2.39 -0.02 1.59 14 4 C -0.50 -27.68 9.00 25.60 0.23 -27.45 14 5 H 0.03 2.12 7.98 -2.91 -0.02 2.10 14 6 C 0.01 0.80 5.45 84.65 0.46 1.27 14 7 N -0.95 -58.76 13.96 21.45 0.30 -58.46 14 8 Si 0.94 43.87 24.37 68.60 1.67 45.54 14 9 H -0.26 -11.63 6.87 99.48 0.68 -10.95 14 10 H -0.24 -10.47 6.53 99.48 0.65 -9.82 14 11 H -0.30 -14.30 7.11 99.48 0.71 -13.59 14 12 C -0.18 -7.02 4.75 -20.11 -0.10 -7.12 14 13 C 0.06 2.40 11.52 85.23 0.98 3.38 14 14 N -0.29 -9.89 12.70 -57.03 -0.72 -10.61 14 15 N -0.46 -13.66 7.36 -50.28 -0.37 -14.03 14 16 H 0.45 9.63 8.96 -213.33 -1.91 7.71 14 17 C 0.11 3.65 7.82 83.57 0.65 4.30 14 18 Cl 0.00 0.10 28.53 -2.72 -0.08 0.02 14 19 H 0.06 2.25 8.02 -2.39 -0.02 2.23 14 20 H 0.06 1.97 8.14 -2.39 -0.02 1.95 14 21 H 0.03 1.34 3.27 -2.38 -0.01 1.33 14 22 H 0.26 15.34 8.31 -92.71 -0.77 14.57 14 23 H 0.20 6.74 8.06 -2.91 -0.02 6.71 14 Total: -1.00 -63.90 215.94 2.87 -61.03 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -0.75 Total: 3.83 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: 2.82 Total: -27.31 kcal Atomic # 7 Polarization: -82.31 SS G_CDS: -0.79 Total: -83.11 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.67 Total: 45.54 kcal Atomic # 17 Polarization: 0.10 SS G_CDS: -0.08 Total: 0.02 kcal Total: -63.90 2.87 -61.03 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261113715.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.811 kcal (2) G-P(sol) polarization free energy of solvation -63.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds