Wall clock time and date at job start Mon Mar 30 2020 03:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47162 * 2 1 4 4 C 1.50697 * 109.39097 * 293.51415 * 3 2 1 5 5 H 1.08002 * 120.00187 * 119.90907 * 4 3 2 6 6 C 1.37882 * 119.99795 * 299.90917 * 4 3 2 7 7 N 1.31516 * 119.99740 * 168.28942 * 6 4 3 8 8 Si 1.86792 * 120.00464 * 348.28322 * 6 4 3 9 9 H 1.48502 * 109.47399 * 268.88128 * 8 6 4 10 10 H 1.48507 * 109.46665 * 28.87854 * 8 6 4 11 11 H 1.48502 * 109.47351 * 148.87725 * 8 6 4 12 12 C 1.52584 * 109.30786 * 173.76359 * 3 2 1 13 13 C 1.52582 * 110.72638 * 169.22699 * 12 3 2 14 14 C 1.53101 * 109.95531 * 70.67315 * 13 12 3 15 15 S 1.81750 * 108.84178 * 296.97654 * 14 13 12 16 16 C 1.53095 * 109.39100 * 53.32029 * 3 2 1 17 17 H 1.08993 * 109.47177 * 173.72231 * 1 2 3 18 18 H 1.08995 * 109.47148 * 293.72695 * 1 2 3 19 19 H 1.09006 * 109.47172 * 53.72372 * 1 2 3 20 20 H 1.09005 * 109.46794 * 240.00192 * 2 1 3 21 21 H 1.08997 * 109.46891 * 120.00365 * 2 1 3 22 22 H 0.96997 * 120.00254 * 179.97438 * 7 6 4 23 23 H 1.09011 * 109.22432 * 289.54761 * 12 3 2 24 24 H 1.08998 * 109.22997 * 48.90075 * 12 3 2 25 25 H 1.08995 * 109.39082 * 310.52874 * 13 12 3 26 26 H 1.08999 * 109.30504 * 190.76926 * 13 12 3 27 27 H 1.08993 * 109.57490 * 177.16647 * 14 13 12 28 28 H 1.09003 * 109.57507 * 56.78079 * 14 13 12 29 29 H 1.09005 * 109.57388 * 302.87841 * 16 3 2 30 30 H 1.09005 * 109.57784 * 63.26216 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6721 2.1033 -1.3034 5 1 1.0442 2.9820 -1.3051 6 6 2.1370 1.5859 -2.4940 7 7 1.6395 2.0113 -3.6346 8 14 3.4736 0.2811 -2.4868 9 1 4.8045 0.9351 -2.5653 10 1 3.3847 -0.5115 -1.2340 11 1 3.2941 -0.6179 -3.6550 12 6 3.5578 1.4410 0.1564 13 6 4.1289 2.8318 -0.1037 14 6 3.7499 3.7748 1.0413 15 16 1.9407 3.9419 1.0898 16 6 1.3961 2.2093 1.1582 17 1 -0.3633 -1.0214 -0.1124 18 1 -0.3633 0.4135 0.9407 19 1 -0.3634 0.6081 -0.8285 20 1 1.8933 -0.5138 -0.8901 21 1 1.8933 -0.5139 0.8899 22 1 1.9668 1.6477 -4.4722 23 1 3.8139 1.1316 1.1699 24 1 3.9911 0.7365 -0.5534 25 1 3.7263 3.2190 -1.0397 26 1 5.2146 2.7679 -0.1756 27 1 4.2026 4.7522 0.8744 28 1 4.1040 3.3627 1.9862 29 1 0.3108 2.1638 1.0676 30 1 1.7044 1.7666 2.1054 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261142542.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:19 Heat of formation + Delta-G solvation = 3.708436 kcal Electronic energy + Delta-G solvation = -12015.660782 eV Core-core repulsion = 10130.361832 eV Total energy + Delta-G solvation = -1885.298950 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -37.82123 -32.92977 -31.86405 -28.69810 -26.95754 -24.96502 -23.20978 -20.44611 -19.07226 -16.10612 -15.67321 -15.50374 -14.08316 -13.53258 -13.28479 -12.99993 -12.55316 -12.48998 -12.33568 -12.11630 -11.22118 -11.05923 -10.70945 -10.64791 -10.26303 -10.00233 -9.91348 -9.32687 -9.25523 -8.84551 -8.40633 -8.29471 -6.70630 -6.03105 -3.96059 2.66903 3.24854 3.31081 3.39978 3.40969 4.42218 5.25670 5.49233 5.53450 5.76033 5.81924 5.95871 6.04420 6.15395 6.19050 6.32384 6.36449 6.43610 6.54042 6.68476 6.74753 6.97328 7.16583 7.21555 7.24106 7.34904 7.81017 8.59076 9.09492 9.60447 11.09158 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.032990 B = 0.019263 C = 0.016540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.531754 B = 1453.210624 C = 1692.501179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C 0.039 3.961 4 C -0.486 4.486 5 H 0.088 0.912 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.855 3.145 9 H -0.285 1.285 10 H -0.238 1.238 11 H -0.303 1.303 12 C -0.132 4.132 13 C -0.118 4.118 14 C -0.069 4.069 15 S -0.275 6.275 16 C -0.047 4.047 17 H 0.031 0.969 18 H 0.039 0.961 19 H 0.074 0.926 20 H 0.064 0.936 21 H 0.029 0.971 22 H 0.261 0.739 23 H 0.036 0.964 24 H 0.059 0.941 25 H 0.102 0.898 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.859 -1.552 8.127 8.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C 0.037 3.963 4 C -0.524 4.524 5 H 0.106 0.894 6 C -0.125 4.125 7 N -0.533 5.533 8 Si 0.687 3.313 9 H -0.213 1.213 10 H -0.165 1.165 11 H -0.231 1.231 12 C -0.169 4.169 13 C -0.157 4.157 14 C -0.217 4.217 15 S -0.048 6.048 16 C -0.196 4.196 17 H 0.050 0.950 18 H 0.058 0.942 19 H 0.093 0.907 20 H 0.082 0.918 21 H 0.048 0.952 22 H 0.071 0.929 23 H 0.055 0.945 24 H 0.077 0.923 25 H 0.121 0.879 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.238 -0.586 7.940 8.270 hybrid contribution 1.644 -1.862 -0.163 2.489 sum 3.882 -2.448 7.777 9.030 Atomic orbital electron populations 1.21723 0.96498 0.99777 1.01785 1.22019 0.95917 0.97897 0.99750 1.18684 0.90286 0.92317 0.95062 1.20879 1.31213 1.13139 0.87131 0.89412 1.24904 0.96295 0.95755 0.95588 1.69929 1.41708 1.44174 0.97524 0.87869 0.83374 0.83316 0.76721 1.21254 1.16483 1.23103 1.22094 0.99099 0.96555 0.99182 1.21710 0.98539 0.95357 1.00074 1.23236 0.94534 1.02869 1.01074 1.86206 1.06529 1.14547 1.97469 1.23507 1.03490 0.92452 1.00102 0.94957 0.94169 0.90686 0.91755 0.95197 0.92890 0.94496 0.92326 0.87930 0.93526 0.89270 0.91620 0.88468 0.92600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.07 37.16 0.34 -2.35 16 2 C -0.12 -2.41 4.32 -26.73 -0.12 -2.52 16 3 C 0.04 0.84 0.29 -155.83 -0.04 0.79 16 4 C -0.49 -12.54 5.20 -34.44 -0.18 -12.72 16 5 H 0.09 2.55 7.43 -52.49 -0.39 2.16 16 6 C 0.08 2.06 5.09 -17.82 -0.09 1.97 16 7 N -0.90 -26.49 13.96 55.43 0.77 -25.72 16 8 Si 0.85 20.61 22.69 -169.99 -3.86 16.76 16 9 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.24 -5.28 4.16 56.52 0.23 -5.04 16 11 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 12 C -0.13 -2.74 3.80 -27.16 -0.10 -2.84 16 13 C -0.12 -2.36 5.26 -26.89 -0.14 -2.50 16 14 C -0.07 -1.22 6.46 37.21 0.24 -0.98 16 15 S -0.27 -5.49 21.09 -107.50 -2.27 -7.76 16 16 C -0.05 -0.94 4.79 37.21 0.18 -0.76 16 17 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 18 H 0.04 0.69 6.65 -51.93 -0.35 0.34 16 19 H 0.07 1.62 7.25 -51.93 -0.38 1.25 16 20 H 0.06 1.42 3.90 -51.93 -0.20 1.22 16 21 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 23 H 0.04 0.69 8.08 -51.92 -0.42 0.27 16 24 H 0.06 1.27 2.70 -51.93 -0.14 1.13 16 25 H 0.10 2.39 6.37 -51.93 -0.33 2.06 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.10 1.92 6.30 -51.92 -0.33 1.59 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 226.20 15.07 3.41 3.41 Total: -1.00 -27.74 226.20 -6.23 -33.97 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -4.37 Total: 1.24 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: 0.08 Total: -21.90 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.77 Total: -25.72 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -3.86 Total: 16.76 kcal Atomic # 16 Polarization: -5.49 SS G_CDS: -2.27 Total: -7.76 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -27.74 -6.23 -33.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142542.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.677 kcal (2) G-P(sol) polarization free energy of solvation -27.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds