Wall clock time and date at job start Mon Mar 30 2020 03:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47162 * 2 1 4 4 C 1.50697 * 109.39097 * 293.51415 * 3 2 1 5 5 H 1.08002 * 120.00187 * 119.90907 * 4 3 2 6 6 C 1.37882 * 119.99795 * 299.90917 * 4 3 2 7 7 N 1.31516 * 119.99740 * 168.28942 * 6 4 3 8 8 Si 1.86792 * 120.00464 * 348.28322 * 6 4 3 9 9 H 1.48502 * 109.47399 * 268.88128 * 8 6 4 10 10 H 1.48507 * 109.46665 * 28.87854 * 8 6 4 11 11 H 1.48502 * 109.47351 * 148.87725 * 8 6 4 12 12 C 1.52584 * 109.30786 * 173.76359 * 3 2 1 13 13 C 1.52582 * 110.72638 * 169.22699 * 12 3 2 14 14 C 1.53101 * 109.95531 * 70.67315 * 13 12 3 15 15 S 1.81750 * 108.84178 * 296.97654 * 14 13 12 16 16 C 1.53095 * 109.39100 * 53.32029 * 3 2 1 17 17 H 1.08993 * 109.47177 * 173.72231 * 1 2 3 18 18 H 1.08995 * 109.47148 * 293.72695 * 1 2 3 19 19 H 1.09006 * 109.47172 * 53.72372 * 1 2 3 20 20 H 1.09005 * 109.46794 * 240.00192 * 2 1 3 21 21 H 1.08997 * 109.46891 * 120.00365 * 2 1 3 22 22 H 0.96997 * 120.00254 * 179.97438 * 7 6 4 23 23 H 1.09011 * 109.22432 * 289.54761 * 12 3 2 24 24 H 1.08998 * 109.22997 * 48.90075 * 12 3 2 25 25 H 1.08995 * 109.39082 * 310.52874 * 13 12 3 26 26 H 1.08999 * 109.30504 * 190.76926 * 13 12 3 27 27 H 1.08993 * 109.57490 * 177.16647 * 14 13 12 28 28 H 1.09003 * 109.57507 * 56.78079 * 14 13 12 29 29 H 1.09005 * 109.57388 * 302.87841 * 16 3 2 30 30 H 1.09005 * 109.57784 * 63.26216 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6721 2.1033 -1.3034 5 1 1.0442 2.9820 -1.3051 6 6 2.1370 1.5859 -2.4940 7 7 1.6395 2.0113 -3.6346 8 14 3.4736 0.2811 -2.4868 9 1 4.8045 0.9351 -2.5653 10 1 3.3847 -0.5115 -1.2340 11 1 3.2941 -0.6179 -3.6550 12 6 3.5578 1.4410 0.1564 13 6 4.1289 2.8318 -0.1037 14 6 3.7499 3.7748 1.0413 15 16 1.9407 3.9419 1.0898 16 6 1.3961 2.2093 1.1582 17 1 -0.3633 -1.0214 -0.1124 18 1 -0.3633 0.4135 0.9407 19 1 -0.3634 0.6081 -0.8285 20 1 1.8933 -0.5138 -0.8901 21 1 1.8933 -0.5139 0.8899 22 1 1.9668 1.6477 -4.4722 23 1 3.8139 1.1316 1.1699 24 1 3.9911 0.7365 -0.5534 25 1 3.7263 3.2190 -1.0397 26 1 5.2146 2.7679 -0.1756 27 1 4.2026 4.7522 0.8744 28 1 4.1040 3.3627 1.9862 29 1 0.3108 2.1638 1.0676 30 1 1.7044 1.7666 2.1054 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261142542.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:18 Heat of formation + Delta-G solvation = -13.344143 kcal Electronic energy + Delta-G solvation = -12016.400237 eV Core-core repulsion = 10130.361832 eV Total energy + Delta-G solvation = -1886.038405 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.51295 -34.51848 -33.88477 -30.27715 -28.55289 -26.90642 -24.81085 -22.00488 -20.90782 -17.88783 -17.49579 -17.20495 -15.68145 -15.20349 -15.06400 -14.79274 -14.14445 -14.08412 -13.95033 -13.68578 -12.94111 -12.75126 -12.38538 -12.27550 -11.92517 -11.84276 -11.62589 -11.06412 -10.87770 -10.63727 -10.39818 -9.97682 -8.31718 -8.11137 -6.08290 1.16900 1.34178 1.36040 1.46074 1.90483 2.41851 3.21628 3.95983 4.02684 4.23784 4.24728 4.47240 4.53126 4.62718 4.66858 4.78834 4.84394 4.87492 4.98850 5.13544 5.16202 5.35870 5.51514 5.52786 5.60615 5.73686 5.88249 6.51554 6.95338 7.50658 9.02034 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.032990 B = 0.019263 C = 0.016540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.531754 B = 1453.210624 C = 1692.501179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.120 4.120 3 C 0.033 3.967 4 C -0.460 4.460 5 H 0.042 0.958 6 C 0.020 3.980 7 N -0.953 5.953 8 Si 0.903 3.097 9 H -0.286 1.286 10 H -0.195 1.195 11 H -0.320 1.320 12 C -0.135 4.135 13 C -0.120 4.120 14 C -0.055 4.055 15 S -0.322 6.322 16 C -0.039 4.039 17 H 0.053 0.947 18 H 0.060 0.940 19 H 0.036 0.964 20 H 0.047 0.953 21 H 0.064 0.936 22 H 0.256 0.744 23 H 0.071 0.929 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.310 -2.949 10.920 12.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.159 4.159 3 C 0.031 3.969 4 C -0.499 4.499 5 H 0.060 0.940 6 C -0.176 4.176 7 N -0.595 5.595 8 Si 0.734 3.266 9 H -0.213 1.213 10 H -0.120 1.120 11 H -0.250 1.250 12 C -0.172 4.172 13 C -0.158 4.158 14 C -0.203 4.203 15 S -0.094 6.094 16 C -0.187 4.187 17 H 0.072 0.928 18 H 0.079 0.921 19 H 0.055 0.945 20 H 0.065 0.935 21 H 0.082 0.918 22 H 0.065 0.935 23 H 0.090 0.910 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.123 0.877 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.692 -1.987 10.778 11.565 hybrid contribution 1.131 -1.327 -0.999 2.010 sum 4.823 -3.314 9.779 11.396 Atomic orbital electron populations 1.21654 0.95829 1.00569 1.01320 1.22008 0.96666 0.96791 1.00440 1.18719 0.91821 0.93081 0.93323 1.20964 1.28631 1.10984 0.89297 0.94016 1.25574 0.98542 0.98271 0.95186 1.70095 1.44201 1.46920 0.98261 0.87112 0.80436 0.81265 0.77779 1.21308 1.11960 1.25011 1.22081 0.97489 0.96722 1.00903 1.21640 0.99869 0.95433 0.98907 1.23287 0.91925 1.03517 1.01591 1.86442 1.09724 1.15759 1.97523 1.23452 1.03088 0.91627 1.00554 0.92799 0.92076 0.94502 0.93462 0.91764 0.93482 0.91034 0.93243 0.92281 0.91037 0.87735 0.88484 0.89100 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 9.07 71.98 0.65 -4.25 16 2 C -0.12 -4.53 4.32 30.59 0.13 -4.40 16 3 C 0.03 1.34 0.29 -53.03 -0.02 1.32 16 4 C -0.46 -24.09 5.20 25.60 0.13 -23.96 16 5 H 0.04 2.53 7.43 -2.91 -0.02 2.51 16 6 C 0.02 1.10 5.09 84.66 0.43 1.53 16 7 N -0.95 -59.11 13.96 21.45 0.30 -58.81 16 8 Si 0.90 42.26 22.69 68.60 1.56 43.81 16 9 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 10 H -0.20 -7.83 4.16 99.48 0.41 -7.42 16 11 H -0.32 -15.82 7.11 99.48 0.71 -15.11 16 12 C -0.13 -5.04 3.80 30.32 0.12 -4.92 16 13 C -0.12 -4.44 5.26 30.49 0.16 -4.28 16 14 C -0.06 -1.77 6.46 72.02 0.46 -1.31 16 15 S -0.32 -12.35 21.09 -56.49 -1.19 -13.54 16 16 C -0.04 -1.44 4.79 72.01 0.34 -1.10 16 17 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 18 H 0.06 1.91 6.65 -2.39 -0.02 1.90 16 19 H 0.04 1.58 7.25 -2.38 -0.02 1.56 16 20 H 0.05 1.94 3.90 -2.38 -0.01 1.93 16 21 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 22 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 23 H 0.07 2.23 8.08 -2.38 -0.02 2.21 16 24 H 0.05 1.94 2.70 -2.39 -0.01 1.94 16 25 H 0.06 2.72 6.37 -2.39 -0.02 2.70 16 26 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 28 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.09 3.42 6.30 -2.38 -0.02 3.41 16 30 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -62.05 226.20 3.90 -58.14 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.82 Total: 11.74 kcal Atomic # 6 Polarization: -43.77 SS G_CDS: 2.42 Total: -41.35 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: 0.30 Total: -58.81 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.56 Total: 43.81 kcal Atomic # 16 Polarization: -12.35 SS G_CDS: -1.19 Total: -13.54 kcal Total: -62.05 3.90 -58.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261142542.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.799 kcal (2) G-P(sol) polarization free energy of solvation -62.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds