Wall clock time and date at job start Mon Mar 30 2020 03:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47103 * 2 1 4 4 C 1.50693 * 109.22152 * 294.35990 * 3 2 1 5 5 H 1.08008 * 119.99911 * 119.82777 * 4 3 2 6 6 C 1.37880 * 120.00533 * 299.82280 * 4 3 2 7 7 N 1.31511 * 119.99931 * 165.60866 * 6 4 3 8 8 Si 1.86794 * 119.99574 * 345.61304 * 6 4 3 9 9 H 1.48501 * 109.47164 * 275.60485 * 8 6 4 10 10 H 1.48499 * 109.47404 * 35.60721 * 8 6 4 11 11 H 1.48501 * 109.47153 * 155.60811 * 8 6 4 12 12 C 1.52575 * 109.22548 * 53.76700 * 3 2 1 13 13 C 1.53025 * 109.99695 * 191.00211 * 12 3 2 14 14 S 1.81753 * 108.81236 * 296.93896 * 13 12 3 15 15 C 1.81747 * 102.22058 * 53.26572 * 14 13 12 16 16 C 1.52581 * 109.22384 * 174.95859 * 3 2 1 17 17 H 1.08998 * 109.47017 * 293.04972 * 1 2 3 18 18 H 1.09007 * 109.46847 * 53.04215 * 1 2 3 19 19 H 1.08999 * 109.47457 * 173.04135 * 1 2 3 20 20 H 1.09002 * 109.46608 * 240.00021 * 2 1 3 21 21 H 1.08998 * 109.47114 * 120.00227 * 2 1 3 22 22 H 0.97000 * 119.99949 * 180.02562 * 7 6 4 23 23 H 1.08999 * 109.39060 * 311.09955 * 12 3 2 24 24 H 1.09000 * 109.39301 * 70.80711 * 12 3 2 25 25 H 1.08997 * 109.58966 * 177.14223 * 13 12 3 26 26 H 1.09001 * 109.69465 * 56.80034 * 13 12 3 27 27 H 1.09004 * 109.57400 * 186.92869 * 15 14 13 28 28 H 1.08998 * 109.68695 * 66.60652 * 15 14 13 29 29 H 1.09001 * 109.39496 * 289.19793 * 16 3 2 30 30 H 1.09003 * 109.39044 * 48.89774 * 16 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6520 2.1059 -1.2962 5 1 1.0221 2.9831 -1.2865 6 6 2.1013 1.5931 -2.4947 7 7 1.5503 1.9815 -3.6239 8 14 3.4924 0.3466 -2.5143 9 1 4.7953 1.0583 -2.4789 10 1 3.3799 -0.5394 -1.3279 11 1 3.4080 -0.4699 -3.7518 12 6 1.4046 2.2000 1.1621 13 6 1.6813 3.6986 1.0235 14 16 3.4748 3.9754 1.1252 15 6 4.1117 2.8403 -0.1433 16 6 3.5606 1.4378 0.1266 17 1 -0.3633 0.4024 0.9456 18 1 -0.3633 0.6179 -0.8212 19 1 -0.3634 -1.0201 -0.1245 20 1 1.8933 -0.5139 -0.8900 21 1 1.8933 -0.5139 0.8899 22 1 1.8661 1.6205 -4.4670 23 1 0.3280 2.0302 1.1593 24 1 1.8240 1.8397 2.1014 25 1 1.1823 4.2383 1.8283 26 1 1.3110 4.0532 0.0616 27 1 5.2007 2.8192 -0.1009 28 1 3.7912 3.1750 -1.1299 29 1 3.8390 1.1271 1.1336 30 1 3.9817 0.7383 -0.5956 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261155265.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:26 Heat of formation + Delta-G solvation = -13.765487 kcal Electronic energy + Delta-G solvation = -12055.065245 eV Core-core repulsion = 10169.008568 eV Total energy + Delta-G solvation = -1886.056676 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.68826 -34.09420 -33.05193 -32.30393 -28.17286 -26.36309 -24.25456 -22.85517 -20.82304 -18.12347 -17.58719 -16.45371 -15.74461 -15.58736 -15.23085 -14.82695 -14.28431 -14.23472 -13.58622 -13.49168 -12.96371 -12.89011 -12.39423 -12.23927 -11.87438 -11.77409 -11.59150 -11.44774 -10.82618 -10.54197 -10.37887 -10.04717 -8.49969 -8.23586 -6.18661 1.11287 1.32096 1.35055 1.44436 1.77027 2.36411 3.12749 4.00038 4.10813 4.18642 4.30965 4.50044 4.53169 4.58818 4.70520 4.84141 4.87787 5.03074 5.09828 5.15527 5.21462 5.26157 5.38684 5.58645 5.62805 5.74935 5.88762 6.42218 6.83857 7.43718 8.92017 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.032656 B = 0.019409 C = 0.016155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.204327 B = 1442.303052 C = 1732.767005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.121 4.121 3 C 0.028 3.972 4 C -0.482 4.482 5 H 0.042 0.958 6 C 0.027 3.973 7 N -0.944 5.944 8 Si 0.906 3.094 9 H -0.279 1.279 10 H -0.207 1.207 11 H -0.320 1.320 12 C -0.093 4.093 13 C -0.062 4.062 14 S -0.299 6.299 15 C -0.061 4.061 16 C -0.125 4.125 17 H 0.063 0.937 18 H 0.037 0.963 19 H 0.049 0.951 20 H 0.043 0.957 21 H 0.059 0.941 22 H 0.259 0.741 23 H 0.075 0.925 24 H 0.071 0.929 25 H 0.108 0.892 26 H 0.070 0.930 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.191 -2.454 9.719 10.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.159 4.159 3 C 0.027 3.973 4 C -0.520 4.520 5 H 0.060 0.940 6 C -0.170 4.170 7 N -0.585 5.585 8 Si 0.737 3.263 9 H -0.206 1.206 10 H -0.131 1.131 11 H -0.250 1.250 12 C -0.131 4.131 13 C -0.209 4.209 14 S -0.074 6.074 15 C -0.209 4.209 16 C -0.163 4.163 17 H 0.082 0.918 18 H 0.057 0.943 19 H 0.068 0.932 20 H 0.062 0.938 21 H 0.077 0.923 22 H 0.068 0.932 23 H 0.093 0.907 24 H 0.089 0.911 25 H 0.126 0.874 26 H 0.088 0.912 27 H 0.114 0.886 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.754 -1.751 10.217 10.725 hybrid contribution -0.042 -1.040 -1.808 2.086 sum 2.712 -2.791 8.409 9.265 Atomic orbital electron populations 1.21652 0.95726 1.00311 1.01472 1.21955 0.96757 0.97110 1.00045 1.18554 0.91035 0.93525 0.94158 1.21044 1.29308 1.11936 0.89714 0.93983 1.25581 0.98381 0.97741 0.95339 1.70094 1.42577 1.47178 0.98639 0.87031 0.81052 0.81439 0.76788 1.20602 1.13127 1.25017 1.21598 1.01388 0.92310 0.97842 1.23387 0.91856 1.00792 1.04911 1.85997 1.09484 1.59509 1.52371 1.23283 1.01551 0.96763 0.99317 1.22226 0.98466 0.94512 1.01112 0.91778 0.94348 0.93244 0.93845 0.92257 0.93230 0.90657 0.91063 0.87390 0.91180 0.88626 0.91203 0.90487 0.93144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 9.08 71.98 0.65 -4.14 16 2 C -0.12 -4.61 4.39 30.59 0.13 -4.47 16 3 C 0.03 1.14 0.29 -53.21 -0.02 1.13 16 4 C -0.48 -24.38 5.19 25.60 0.13 -24.25 16 5 H 0.04 2.40 6.22 -2.91 -0.02 2.38 16 6 C 0.03 1.45 5.01 84.66 0.42 1.87 16 7 N -0.94 -56.91 13.96 21.45 0.30 -56.61 16 8 Si 0.91 42.01 22.30 68.60 1.53 43.54 16 9 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 10 H -0.21 -8.41 4.39 99.48 0.44 -7.97 16 11 H -0.32 -15.66 7.11 99.48 0.71 -14.96 16 12 C -0.09 -3.25 4.46 30.46 0.14 -3.11 16 13 C -0.06 -2.20 6.14 71.99 0.44 -1.76 16 14 S -0.30 -10.91 22.33 -56.49 -1.26 -12.17 16 15 C -0.06 -2.41 5.77 72.01 0.42 -1.99 16 16 C -0.12 -4.82 3.95 30.49 0.12 -4.70 16 17 H 0.06 1.97 6.50 -2.39 -0.02 1.96 16 18 H 0.04 1.62 7.19 -2.38 -0.02 1.60 16 19 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 20 H 0.04 1.80 4.02 -2.39 -0.01 1.79 16 21 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 22 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 23 H 0.08 2.55 5.83 -2.39 -0.01 2.53 16 24 H 0.07 2.21 8.06 -2.39 -0.02 2.20 16 25 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 26 H 0.07 2.93 5.95 -2.39 -0.01 2.91 16 27 H 0.10 3.35 8.14 -2.39 -0.02 3.34 16 28 H 0.07 3.22 6.30 -2.39 -0.02 3.21 16 29 H 0.08 2.61 8.06 -2.39 -0.02 2.59 16 30 H 0.05 2.03 2.62 -2.39 -0.01 2.02 16 Total: -1.00 -58.01 223.09 3.87 -54.14 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: 0.85 Total: 12.53 kcal Atomic # 6 Polarization: -43.87 SS G_CDS: 2.44 Total: -41.43 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.30 Total: -56.61 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 1.53 Total: 43.54 kcal Atomic # 16 Polarization: -10.91 SS G_CDS: -1.26 Total: -12.17 kcal Total: -58.01 3.87 -54.14 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261155265.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.376 kcal (2) G-P(sol) polarization free energy of solvation -58.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds