Wall clock time and date at job start Mon Mar 30 2020 01:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40077 * 126.03897 * 2 1 4 4 C 1.30835 * 108.24155 * 179.97438 * 3 2 1 5 5 C 1.50699 * 125.89157 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.46817 * 305.02477 * 5 4 3 7 7 H 1.07999 * 120.00196 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99394 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00338 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99426 * 180.02562 * 8 6 5 11 11 H 1.48495 * 109.47776 * 59.99746 * 10 8 6 12 12 H 1.48503 * 109.46851 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47028 * 299.99350 * 10 8 6 14 14 C 1.39858 * 108.21690 * 0.26376 * 4 3 2 15 15 C 1.34986 * 126.03689 * 179.97438 * 2 1 3 16 16 Cl 1.73605 * 126.14017 * 0.02562 * 15 2 1 17 17 H 1.09000 * 109.46954 * 90.02391 * 1 2 3 18 18 H 1.09009 * 109.46649 * 210.02074 * 1 2 3 19 19 H 1.08991 * 109.47286 * 330.02188 * 1 2 3 20 20 H 1.09000 * 109.46670 * 185.02700 * 5 4 3 21 21 H 1.09000 * 109.47247 * 65.02414 * 5 4 3 22 22 H 0.96996 * 119.99730 * 180.02562 * 9 8 6 23 23 H 1.08004 * 126.05038 * 179.72821 * 14 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5349 0.7328 0.0006 5 6 4.7492 1.6252 0.0013 6 6 4.6716 2.5799 -1.1622 7 1 3.8272 2.5444 -1.8346 8 6 5.6787 3.4988 -1.3681 9 7 6.7067 3.5425 -0.5490 10 14 5.5822 4.6828 -2.8098 11 1 4.3578 5.5139 -2.6868 12 1 6.7796 5.5612 -2.8098 13 1 5.5331 3.9138 -4.0792 14 6 3.5451 -0.6657 -0.0052 15 6 2.2591 -1.0915 0.0005 16 17 1.7278 -2.7443 0.0006 17 1 -0.3633 -0.0004 -1.0277 18 1 -0.3633 -0.8899 0.5142 19 1 -0.3633 0.8901 0.5134 20 1 5.6482 1.0154 -0.0884 21 1 4.7846 2.1898 0.9330 22 1 7.4150 4.1892 -0.6937 23 1 4.4230 -1.2949 -0.0104 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261198700.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:18 Heat of formation + Delta-G solvation = 42.488866 kcal Electronic energy + Delta-G solvation = -10371.451750 eV Core-core repulsion = 8246.417301 eV Total energy + Delta-G solvation = -2125.034449 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.041 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.12681 -37.89850 -35.72523 -34.19143 -31.23917 -30.39486 -27.28267 -24.97951 -22.09316 -20.84866 -18.46415 -18.09548 -16.61139 -16.52178 -15.50530 -15.00921 -14.45193 -14.20347 -13.79210 -13.56898 -13.27577 -12.89147 -12.65374 -12.54587 -12.52127 -11.91927 -11.62807 -11.27315 -10.59243 -9.99664 -9.53278 -8.19410 -6.29304 0.42837 0.70571 1.41188 1.44534 1.52412 1.78689 1.82403 2.44384 3.13591 3.59350 4.21339 4.36417 4.50034 4.57895 4.62861 4.90150 5.27608 5.43913 5.62609 5.73761 5.89704 6.16445 6.74235 6.81584 7.37587 8.91650 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.061304 B = 0.008133 C = 0.007678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.628221 B = 3442.008084 C = 3645.948339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.378 5.378 3 N -0.306 5.306 4 C 0.098 3.902 5 C 0.095 3.905 6 C -0.528 4.528 7 H 0.049 0.951 8 C 0.008 3.992 9 N -0.927 5.927 10 Si 0.965 3.035 11 H -0.272 1.272 12 H -0.276 1.276 13 H -0.269 1.269 14 C -0.265 4.265 15 C 0.123 3.877 16 Cl 0.017 6.983 17 H 0.089 0.911 18 H 0.112 0.888 19 H 0.098 0.902 20 H 0.031 0.969 21 H 0.015 0.985 22 H 0.267 0.733 23 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.319 -10.608 0.557 15.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.163 5.163 3 N -0.130 5.130 4 C -0.066 4.066 5 C 0.057 3.943 6 C -0.566 4.566 7 H 0.067 0.933 8 C -0.191 4.191 9 N -0.567 5.567 10 Si 0.790 3.210 11 H -0.198 1.198 12 H -0.201 1.201 13 H -0.194 1.194 14 C -0.296 4.296 15 C -0.032 4.032 16 Cl 0.045 6.955 17 H 0.108 0.892 18 H 0.130 0.870 19 H 0.117 0.883 20 H 0.049 0.951 21 H 0.033 0.967 22 H 0.076 0.924 23 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.180 -9.684 0.598 15.572 hybrid contribution 0.651 -0.165 -0.532 0.857 sum -11.529 -9.849 0.066 15.163 Atomic orbital electron populations 1.22244 0.71772 1.06092 1.04947 1.49104 1.08146 1.01855 1.57191 1.77546 1.02416 1.05870 1.27200 1.22834 0.93941 0.94188 0.95687 1.17573 0.87834 0.92251 0.96666 1.21254 1.06191 1.17529 1.11634 0.93265 1.25841 0.94759 0.99039 0.99433 1.70043 1.10496 1.37263 1.38850 0.85501 0.77708 0.78540 0.79283 1.19768 1.20127 1.19393 1.21319 0.96237 0.94364 1.17635 1.21700 0.91150 0.83784 1.06552 1.98367 1.90361 1.09757 1.97029 0.89225 0.86994 0.88334 0.95066 0.96725 0.92411 0.81714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.97 11.31 127.77 1.45 3.42 14 2 N -0.38 -13.17 4.01 -359.25 -1.44 -14.61 14 3 N -0.31 -14.00 12.53 -47.39 -0.59 -14.59 14 4 C 0.10 4.68 6.43 43.10 0.28 4.96 14 5 C 0.10 5.26 5.55 29.10 0.16 5.42 14 6 C -0.53 -31.16 9.07 25.60 0.23 -30.93 14 7 H 0.05 2.93 7.74 -2.91 -0.02 2.91 14 8 C 0.01 0.45 5.46 84.66 0.46 0.91 14 9 N -0.93 -55.88 13.29 21.45 0.28 -55.59 14 10 Si 0.97 45.21 29.54 68.60 2.03 47.24 14 11 H -0.27 -12.51 7.11 99.48 0.71 -11.80 14 12 H -0.28 -12.38 7.11 99.48 0.71 -11.67 14 13 H -0.27 -12.17 7.11 99.48 0.71 -11.47 14 14 C -0.27 -10.43 10.71 22.02 0.24 -10.20 14 15 C 0.12 4.09 7.46 83.57 0.62 4.71 14 16 Cl 0.02 0.40 28.76 -2.72 -0.08 0.32 14 17 H 0.09 1.72 8.14 -2.39 -0.02 1.70 14 18 H 0.11 1.78 7.81 -2.38 -0.02 1.76 14 19 H 0.10 2.06 8.14 -2.39 -0.02 2.04 14 20 H 0.03 1.74 8.12 -2.39 -0.02 1.72 14 21 H 0.01 0.86 8.14 -2.39 -0.02 0.84 14 22 H 0.27 15.07 8.31 -92.71 -0.77 14.30 14 23 H 0.17 5.77 8.06 -2.91 -0.02 5.75 14 Total: -1.00 -67.70 229.89 4.84 -62.86 By element: Atomic # 1 Polarization: -5.13 SS G_CDS: 1.21 Total: -3.92 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: 3.44 Total: -21.70 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -1.75 Total: -84.80 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Atomic # 17 Polarization: 0.40 SS G_CDS: -0.08 Total: 0.32 kcal Total: -67.70 4.84 -62.86 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261198700.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.347 kcal (2) G-P(sol) polarization free energy of solvation -67.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds