Wall clock time and date at job start Mon Mar 30 2020 02:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00159 * 2 1 4 4 H 1.48507 * 109.46986 * 269.99974 * 3 2 1 5 5 H 1.48501 * 109.47414 * 29.99447 * 3 2 1 6 6 H 1.48500 * 109.47440 * 150.00054 * 3 2 1 7 7 C 1.37874 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99869 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99926 * 0.02562 * 7 2 1 10 10 H 1.09006 * 109.57439 * 300.15266 * 9 7 2 11 11 C 1.53104 * 109.60231 * 60.27721 * 9 7 2 12 12 O 1.42903 * 109.48830 * 177.42523 * 11 9 7 13 13 C 1.42906 * 114.09369 * 298.88424 * 12 11 9 14 14 C 1.53089 * 109.41510 * 61.16104 * 13 12 11 15 15 C 1.53175 * 109.16413 * 302.39044 * 14 13 12 16 16 H 1.09002 * 109.54083 * 297.02171 * 15 14 13 17 17 C 1.50706 * 109.54185 * 176.84894 * 15 14 13 18 18 O 1.20825 * 119.99859 * 240.17061 * 17 15 14 19 19 O 1.34224 * 120.00295 * 60.18020 * 17 15 14 20 20 H 0.97003 * 119.99548 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.40427 * 57.43673 * 11 9 7 22 22 H 1.09009 * 109.48787 * 297.45560 * 11 9 7 23 23 H 1.09006 * 109.48180 * 301.17481 * 13 12 11 24 24 H 1.08999 * 109.47714 * 181.14480 * 13 12 11 25 25 H 1.09001 * 109.52335 * 182.48366 * 14 13 12 26 26 H 1.09007 * 109.57221 * 62.32714 * 14 13 12 27 27 H 0.96700 * 117.00196 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4467 2.6527 0.6999 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6213 -2.5572 0.8884 11 6 0.3753 -2.5866 -1.2523 12 8 -0.2920 -3.8499 -1.2802 13 6 0.5889 -4.9741 -1.3293 14 6 1.4716 -4.9839 -0.0785 15 6 2.2453 -3.6643 0.0012 16 1 2.9087 -3.5781 -0.8594 17 6 3.0584 -3.6326 1.2697 18 8 2.8663 -2.7654 2.0889 19 8 3.9962 -4.5674 1.4894 20 1 -0.4849 0.8401 -0.0004 21 1 1.0010 -2.4863 -2.1391 22 1 -0.3636 -1.7854 -1.2362 23 1 1.2174 -4.9051 -2.2172 24 1 0.0038 -5.8929 -1.3685 25 1 2.1742 -5.8153 -0.1350 26 1 0.8472 -5.0942 0.8082 27 1 4.4924 -4.5055 2.3171 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261231261.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:57 Heat of formation + Delta-G solvation = -172.606864 kcal Electronic energy + Delta-G solvation = -13464.731137 eV Core-core repulsion = 10993.200616 eV Total energy + Delta-G solvation = -2471.530521 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.41634 -39.59076 -36.96889 -35.50588 -34.16611 -31.56510 -27.56156 -26.63555 -23.72259 -22.94339 -20.71590 -18.83228 -18.64203 -17.65921 -16.77201 -16.69873 -16.36069 -15.88619 -15.23319 -14.60869 -14.51014 -14.03209 -13.61304 -12.90201 -12.82129 -12.46258 -12.42672 -12.36372 -12.10421 -11.87251 -11.35658 -11.14982 -10.85682 -10.57906 -10.17168 -8.14094 -6.23148 1.38019 1.40204 1.43167 1.49984 2.29066 2.41283 3.11646 3.34353 3.90300 4.01186 4.09572 4.52702 4.53741 4.72896 4.75707 4.88186 5.06256 5.11287 5.12835 5.52545 5.69791 5.76347 5.86412 6.16461 6.58945 6.82777 7.21230 7.42214 8.93259 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.031886 B = 0.015421 C = 0.011134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.913289 B = 1815.218243 C = 2514.132137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.011 3.989 3 Si 0.954 3.046 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.278 1.278 7 C -0.510 4.510 8 H 0.047 0.953 9 C 0.035 3.965 10 H -0.003 1.003 11 C 0.079 3.921 12 O -0.416 6.416 13 C 0.057 3.943 14 C -0.136 4.136 15 C -0.076 4.076 16 H 0.110 0.890 17 C 0.483 3.517 18 O -0.534 6.534 19 O -0.512 6.512 20 H 0.263 0.737 21 H 0.036 0.964 22 H 0.092 0.908 23 H 0.063 0.937 24 H 0.118 0.882 25 H 0.110 0.890 26 H 0.057 0.943 27 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.379 -9.812 -2.033 11.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.203 1.203 7 C -0.548 4.548 8 H 0.065 0.935 9 C 0.016 3.984 10 H 0.015 0.985 11 C 0.002 3.998 12 O -0.335 6.335 13 C -0.020 4.020 14 C -0.174 4.174 15 C -0.095 4.095 16 H 0.128 0.872 17 C 0.326 3.674 18 O -0.422 6.422 19 O -0.325 6.325 20 H 0.072 0.928 21 H 0.055 0.945 22 H 0.109 0.891 23 H 0.081 0.919 24 H 0.136 0.864 25 H 0.129 0.871 26 H 0.076 0.924 27 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 4.763 -9.494 -2.165 10.840 hybrid contribution 0.892 1.344 0.933 1.864 sum 5.655 -8.149 -1.232 9.995 Atomic orbital electron populations 1.69966 1.07007 1.27379 1.51715 1.25699 0.95730 1.02428 0.94887 0.85612 0.78355 0.79526 0.78504 1.19110 1.20982 1.20327 1.21160 0.92411 0.91349 1.49855 0.93466 1.19079 0.92685 0.91980 0.94664 0.98474 1.22676 0.96871 0.83886 0.96343 1.87850 1.35344 1.15424 1.94908 1.22771 0.93184 0.89923 0.96098 1.22186 0.99418 0.95593 1.00189 1.21261 0.96603 0.98611 0.92982 0.87234 1.23687 0.77748 0.77391 0.88566 1.90729 1.66971 1.37012 1.47516 1.84495 1.48733 1.52107 1.47187 0.92780 0.94526 0.89051 0.91855 0.86372 0.87136 0.92419 0.72013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.42 11.38 21.45 0.24 -54.18 15 2 C 0.01 0.61 5.31 84.65 0.45 1.06 15 3 Si 0.95 45.12 29.54 68.60 2.03 47.14 15 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 15 5 H -0.28 -13.26 7.11 99.48 0.71 -12.56 15 6 H -0.28 -13.17 7.11 99.48 0.71 -12.46 15 7 C -0.51 -28.59 7.12 25.60 0.18 -28.40 15 8 H 0.05 2.64 7.52 -2.91 -0.02 2.62 15 9 C 0.03 1.77 1.44 -11.45 -0.02 1.76 15 10 H 0.00 -0.17 8.03 -2.38 -0.02 -0.19 15 11 C 0.08 3.79 5.87 72.02 0.42 4.22 15 12 O -0.42 -17.66 10.77 -148.98 -1.60 -19.26 15 13 C 0.06 1.73 6.84 72.01 0.49 2.22 15 14 C -0.14 -4.26 5.36 30.68 0.16 -4.10 15 15 C -0.08 -2.99 2.17 -11.42 -0.02 -3.02 15 16 H 0.11 4.01 8.14 -2.39 -0.02 3.99 15 17 C 0.48 19.22 7.24 71.24 0.52 19.74 15 18 O -0.53 -26.45 15.67 21.97 0.34 -26.11 15 19 O -0.51 -14.52 13.36 -51.35 -0.69 -15.21 15 20 H 0.26 14.77 8.31 -92.71 -0.77 14.00 15 21 H 0.04 1.66 8.14 -2.39 -0.02 1.64 15 22 H 0.09 5.05 6.18 -2.38 -0.01 5.03 15 23 H 0.06 1.71 8.14 -2.38 -0.02 1.69 15 24 H 0.12 2.80 8.14 -2.39 -0.02 2.78 15 25 H 0.11 2.62 8.14 -2.39 -0.02 2.60 15 26 H 0.06 1.94 8.14 -2.38 -0.02 1.92 15 27 H 0.42 8.08 9.10 -74.06 -0.67 7.41 15 Total: -1.00 -69.80 231.36 3.01 -66.78 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 0.50 Total: 7.35 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: 2.19 Total: -6.53 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.24 Total: -54.18 kcal Atomic # 8 Polarization: -58.63 SS G_CDS: -1.95 Total: -60.57 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -69.80 3.01 -66.78 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261231261.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.823 kcal (2) G-P(sol) polarization free energy of solvation -69.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds