Wall clock time and date at job start Mon Mar 30 2020 02:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00153 * 2 1 4 4 H 1.48507 * 109.46930 * 239.99792 * 3 2 1 5 5 H 1.48496 * 109.47308 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47115 * 120.00078 * 3 2 1 7 7 C 1.37879 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00424 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99719 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.51944 * 59.87533 * 9 7 2 11 11 C 1.53090 * 109.52656 * 299.68398 * 9 7 2 12 12 O 1.42900 * 109.41229 * 297.70815 * 11 9 7 13 13 C 1.42910 * 114.09727 * 298.83586 * 12 11 9 14 14 C 1.53092 * 109.41107 * 61.16189 * 13 12 11 15 15 C 1.53175 * 109.16179 * 302.39040 * 14 13 12 16 16 H 1.08997 * 109.54332 * 297.10912 * 15 14 13 17 17 C 1.50705 * 109.53841 * 176.85093 * 15 14 13 18 18 O 1.20827 * 119.99421 * 240.44329 * 17 15 14 19 19 O 1.34221 * 120.00116 * 60.44659 * 17 15 14 20 20 H 0.97002 * 120.00073 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.47673 * 57.68563 * 11 9 7 22 22 H 1.08995 * 109.48193 * 177.71143 * 11 9 7 23 23 H 1.08998 * 109.48144 * 181.14387 * 13 12 11 24 24 H 1.08997 * 109.47868 * 301.17666 * 13 12 11 25 25 H 1.09006 * 109.51892 * 182.48274 * 14 13 12 26 26 H 1.08998 * 109.52361 * 62.29956 * 14 13 12 27 27 H 0.96702 * 117.00385 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0017 10 1 0.6219 -2.5573 -0.8866 11 6 0.3767 -2.5841 1.2556 12 8 1.2090 -2.5650 2.4170 13 6 2.1269 -3.6576 2.4951 14 6 3.0713 -3.6158 1.2910 15 6 2.2451 -3.6644 0.0021 16 1 1.7015 -4.6078 -0.0472 17 6 3.1613 -3.5458 -1.1886 18 8 3.0335 -2.6243 -1.9597 19 8 4.1191 -4.4637 -1.3926 20 1 -0.4850 0.8401 -0.0004 21 1 -0.3042 -1.7333 1.2823 22 1 -0.1986 -3.5097 1.2356 23 1 2.7068 -3.5802 3.4148 24 1 1.5746 -4.5972 2.4915 25 1 3.7436 -4.4732 1.3254 26 1 3.6532 -2.6944 1.3162 27 1 4.6820 -4.3457 -2.1700 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261231264.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:21 Heat of formation + Delta-G solvation = -142.467025 kcal Electronic energy + Delta-G solvation = -13643.753076 eV Core-core repulsion = 11173.529517 eV Total energy + Delta-G solvation = -2470.223559 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.80392 -37.90856 -35.40640 -33.37119 -32.23999 -29.63766 -25.74148 -24.67408 -22.27221 -21.32822 -18.92586 -17.28135 -16.39622 -15.80970 -15.22173 -14.56745 -14.45746 -14.27036 -13.72772 -12.85793 -12.78323 -12.17195 -11.62754 -11.33609 -10.90332 -10.76859 -10.69657 -10.48623 -10.22576 -9.76593 -9.51010 -9.37091 -9.01600 -8.48701 -8.12619 -5.91176 -3.88979 3.05464 3.42889 3.44797 3.49294 3.76834 4.55673 5.00494 5.44258 5.47032 5.63036 5.65384 5.98938 6.08261 6.21662 6.32696 6.41819 6.67815 6.81097 6.94472 7.15819 7.49957 7.62756 8.04303 8.27979 8.49470 8.70649 9.01534 9.70896 11.18114 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.030343 B = 0.017070 C = 0.013042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.562758 B = 1639.868524 C = 2146.346885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.469 4.469 8 H 0.052 0.948 9 C 0.027 3.973 10 H 0.043 0.957 11 C 0.068 3.932 12 O -0.372 6.372 13 C 0.067 3.933 14 C -0.136 4.136 15 C -0.070 4.070 16 H 0.081 0.919 17 C 0.473 3.527 18 O -0.478 6.478 19 O -0.535 6.535 20 H 0.260 0.740 21 H 0.127 0.873 22 H 0.006 0.994 23 H 0.080 0.920 24 H 0.035 0.965 25 H 0.061 0.939 26 H 0.081 0.919 27 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.458 -8.159 1.510 9.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.139 4.139 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.507 4.507 8 H 0.070 0.930 9 C 0.008 3.992 10 H 0.061 0.939 11 C -0.008 4.008 12 O -0.291 6.291 13 C -0.011 4.011 14 C -0.174 4.174 15 C -0.090 4.090 16 H 0.099 0.901 17 C 0.313 3.687 18 O -0.361 6.361 19 O -0.347 6.347 20 H 0.070 0.930 21 H 0.144 0.856 22 H 0.024 0.976 23 H 0.098 0.902 24 H 0.053 0.947 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 3.993 -7.645 1.771 8.805 hybrid contribution 0.930 0.735 -0.896 1.486 sum 4.923 -6.910 0.876 8.529 Atomic orbital electron populations 1.69745 1.05819 1.26554 1.52235 1.24801 0.94832 0.98938 0.95355 0.86618 0.79572 0.83221 0.78348 1.20566 1.21426 1.20412 1.20709 0.92288 0.89483 1.48196 0.93021 1.19327 0.92681 0.91547 0.95643 0.93902 1.22878 0.92495 1.00192 0.85248 1.87944 1.50916 1.46241 1.43977 1.22331 0.91462 0.90279 0.97001 1.22062 0.98481 1.02703 0.94122 1.21246 0.95475 1.02281 0.89959 0.90108 1.23743 0.79039 0.78721 0.87198 1.90758 1.68636 1.31313 1.45420 1.84589 1.45821 1.53772 1.50523 0.92993 0.85569 0.97561 0.90152 0.94727 0.91994 0.90008 0.74822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.17 11.33 55.43 0.63 -25.54 15 2 C 0.06 1.71 5.30 -17.82 -0.09 1.62 15 3 Si 0.89 22.56 29.54 -169.99 -5.02 17.54 15 4 H -0.28 -7.13 7.11 56.52 0.40 -6.73 15 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 15 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 15 7 C -0.47 -13.03 5.91 -34.44 -0.20 -13.23 15 8 H 0.05 1.47 6.23 -52.49 -0.33 1.14 15 9 C 0.03 0.66 1.85 -91.63 -0.17 0.49 15 10 H 0.04 1.17 8.14 -51.93 -0.42 0.74 15 11 C 0.07 1.61 6.07 37.20 0.23 1.84 15 12 O -0.37 -8.52 10.45 -35.23 -0.37 -8.89 15 13 C 0.07 1.20 6.84 37.21 0.25 1.46 15 14 C -0.14 -2.50 5.09 -26.59 -0.14 -2.64 15 15 C -0.07 -1.43 2.49 -91.59 -0.23 -1.66 15 16 H 0.08 1.45 8.14 -51.93 -0.42 1.03 15 17 C 0.47 9.65 7.12 36.01 0.26 9.90 15 18 O -0.48 -11.67 15.23 -18.75 -0.29 -11.96 15 19 O -0.53 -8.45 13.36 -39.23 -0.52 -8.97 15 20 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 21 H 0.13 3.35 6.05 -51.93 -0.31 3.04 15 22 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 15 23 H 0.08 1.25 8.14 -51.93 -0.42 0.83 15 24 H 0.03 0.55 8.14 -51.93 -0.42 0.13 15 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 26 H 0.08 1.69 6.88 -51.93 -0.36 1.33 15 27 H 0.39 4.47 9.10 45.56 0.41 4.88 15 LS Contribution 227.32 15.07 3.43 3.43 Total: -1.00 -31.86 227.32 -4.49 -36.36 By element: Atomic # 1 Polarization: 2.51 SS G_CDS: -2.25 Total: 0.26 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -0.09 Total: -2.22 kcal Atomic # 7 Polarization: -26.17 SS G_CDS: 0.63 Total: -25.54 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -1.18 Total: -29.82 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -31.86 -4.49 -36.36 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261231264.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.109 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds