Wall clock time and date at job start Mon Mar 30 2020 02:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00153 * 2 1 4 4 H 1.48507 * 109.46930 * 239.99792 * 3 2 1 5 5 H 1.48496 * 109.47308 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47115 * 120.00078 * 3 2 1 7 7 C 1.37879 * 119.99833 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00424 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99719 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.51944 * 59.87533 * 9 7 2 11 11 C 1.53090 * 109.52656 * 299.68398 * 9 7 2 12 12 O 1.42900 * 109.41229 * 297.70815 * 11 9 7 13 13 C 1.42910 * 114.09727 * 298.83586 * 12 11 9 14 14 C 1.53092 * 109.41107 * 61.16189 * 13 12 11 15 15 C 1.53175 * 109.16179 * 302.39040 * 14 13 12 16 16 H 1.08997 * 109.54332 * 297.10912 * 15 14 13 17 17 C 1.50705 * 109.53841 * 176.85093 * 15 14 13 18 18 O 1.20827 * 119.99421 * 240.44329 * 17 15 14 19 19 O 1.34221 * 120.00116 * 60.44659 * 17 15 14 20 20 H 0.97002 * 120.00073 * 0.02562 * 1 2 3 21 21 H 1.09003 * 109.47673 * 57.68563 * 11 9 7 22 22 H 1.08995 * 109.48193 * 177.71143 * 11 9 7 23 23 H 1.08998 * 109.48144 * 181.14387 * 13 12 11 24 24 H 1.08997 * 109.47868 * 301.17666 * 13 12 11 25 25 H 1.09006 * 109.51892 * 182.48274 * 14 13 12 26 26 H 1.08998 * 109.52361 * 62.29956 * 14 13 12 27 27 H 0.96702 * 117.00385 * 179.97438 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0017 10 1 0.6219 -2.5573 -0.8866 11 6 0.3767 -2.5841 1.2556 12 8 1.2090 -2.5650 2.4170 13 6 2.1269 -3.6576 2.4951 14 6 3.0713 -3.6158 1.2910 15 6 2.2451 -3.6644 0.0021 16 1 1.7015 -4.6078 -0.0472 17 6 3.1613 -3.5458 -1.1886 18 8 3.0335 -2.6243 -1.9597 19 8 4.1191 -4.4637 -1.3926 20 1 -0.4850 0.8401 -0.0004 21 1 -0.3042 -1.7333 1.2823 22 1 -0.1986 -3.5097 1.2356 23 1 2.7068 -3.5802 3.4148 24 1 1.5746 -4.5972 2.4915 25 1 3.7436 -4.4732 1.3254 26 1 3.6532 -2.6944 1.3162 27 1 4.6820 -4.3457 -2.1700 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261231264.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:21 Heat of formation + Delta-G solvation = -166.100149 kcal Electronic energy + Delta-G solvation = -13644.777885 eV Core-core repulsion = 11173.529517 eV Total energy + Delta-G solvation = -2471.248368 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41250 -39.54519 -36.92432 -35.26017 -34.05851 -31.40854 -27.52296 -26.59395 -23.92256 -22.88612 -20.68048 -18.84243 -18.23187 -17.53348 -16.88387 -16.42443 -16.19293 -15.96281 -15.34979 -14.63548 -14.48561 -13.78095 -13.45147 -12.99204 -12.77242 -12.66870 -12.43139 -12.22970 -12.00124 -11.55271 -11.26056 -11.13754 -10.85665 -10.47392 -9.99379 -8.05003 -6.07004 1.38549 1.40750 1.46819 1.47088 2.33061 2.47309 3.26204 3.44239 3.94143 4.10101 4.18934 4.53595 4.59505 4.72444 4.77423 4.91855 5.09075 5.14748 5.31186 5.55606 5.64229 5.78215 5.96591 6.29208 6.76119 6.88524 7.25162 7.53853 9.02523 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.030343 B = 0.017070 C = 0.013042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.562758 B = 1639.868524 C = 2146.346885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.943 3.057 4 H -0.285 1.285 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.470 4.470 8 H 0.039 0.961 9 C 0.022 3.978 10 H 0.008 0.992 11 C 0.078 3.922 12 O -0.399 6.399 13 C 0.059 3.941 14 C -0.128 4.128 15 C -0.074 4.074 16 H 0.113 0.887 17 C 0.481 3.519 18 O -0.530 6.530 19 O -0.514 6.514 20 H 0.258 0.742 21 H 0.090 0.910 22 H 0.035 0.965 23 H 0.108 0.892 24 H 0.065 0.935 25 H 0.102 0.898 26 H 0.053 0.947 27 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.666 -9.797 2.309 11.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.770 3.230 4 H -0.211 1.211 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.508 4.508 8 H 0.058 0.942 9 C 0.003 3.997 10 H 0.026 0.974 11 C 0.001 3.999 12 O -0.318 6.318 13 C -0.018 4.018 14 C -0.166 4.166 15 C -0.093 4.093 16 H 0.131 0.869 17 C 0.323 3.677 18 O -0.418 6.418 19 O -0.327 6.327 20 H 0.068 0.932 21 H 0.108 0.892 22 H 0.053 0.947 23 H 0.126 0.874 24 H 0.083 0.917 25 H 0.120 0.880 26 H 0.072 0.928 27 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 5.234 -9.317 2.577 10.993 hybrid contribution 0.634 1.129 -1.159 1.738 sum 5.868 -8.189 1.418 10.173 Atomic orbital electron populations 1.69875 1.06657 1.26834 1.53356 1.25502 0.95682 1.01803 0.95929 0.85841 0.78600 0.80433 0.78115 1.21073 1.20755 1.19740 1.20935 0.91834 0.91083 1.46940 0.94239 1.19217 0.93342 0.92376 0.94723 0.97442 1.22527 0.92269 1.00046 0.85078 1.87886 1.51873 1.48835 1.43185 1.22692 0.91072 0.90058 0.97951 1.22034 0.98522 1.02992 0.93025 1.21205 0.95307 1.01593 0.91214 0.86898 1.23714 0.79269 0.78260 0.86419 1.90750 1.70235 1.33608 1.47184 1.84496 1.44864 1.51666 1.51697 0.93248 0.89198 0.94732 0.87439 0.91677 0.88007 0.92833 0.72117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.05 11.33 21.45 0.24 -54.80 15 2 C 0.01 0.42 5.30 84.66 0.45 0.87 15 3 Si 0.94 46.92 29.54 68.60 2.03 48.94 15 4 H -0.28 -14.25 7.11 99.48 0.71 -13.54 15 5 H -0.28 -13.62 7.11 99.48 0.71 -12.91 15 6 H -0.27 -13.12 7.11 99.48 0.71 -12.42 15 7 C -0.47 -26.46 5.91 25.60 0.15 -26.31 15 8 H 0.04 2.27 6.23 -2.91 -0.02 2.25 15 9 C 0.02 1.10 1.85 -11.45 -0.02 1.08 15 10 H 0.01 0.42 8.14 -2.39 -0.02 0.40 15 11 C 0.08 3.64 6.07 72.01 0.44 4.08 15 12 O -0.40 -17.65 10.45 -148.98 -1.56 -19.21 15 13 C 0.06 1.90 6.84 72.01 0.49 2.39 15 14 C -0.13 -4.29 5.09 30.68 0.16 -4.14 15 15 C -0.07 -2.86 2.49 -11.42 -0.03 -2.89 15 16 H 0.11 3.63 8.14 -2.39 -0.02 3.61 15 17 C 0.48 18.80 7.12 71.24 0.51 19.31 15 18 O -0.53 -25.91 15.23 21.96 0.33 -25.57 15 19 O -0.51 -14.46 13.36 -51.33 -0.69 -15.14 15 20 H 0.26 14.79 8.31 -92.71 -0.77 14.02 15 21 H 0.09 4.88 6.05 -2.39 -0.01 4.87 15 22 H 0.03 1.40 8.14 -2.39 -0.02 1.38 15 23 H 0.11 2.89 8.14 -2.39 -0.02 2.87 15 24 H 0.07 1.74 8.14 -2.39 -0.02 1.72 15 25 H 0.10 2.63 8.14 -2.38 -0.02 2.61 15 26 H 0.05 2.10 6.88 -2.39 -0.02 2.09 15 27 H 0.42 8.05 9.10 -74.06 -0.67 7.38 15 Total: -1.00 -70.09 227.32 3.02 -67.08 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: 0.51 Total: 4.32 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 2.14 Total: -5.61 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 0.24 Total: -54.80 kcal Atomic # 8 Polarization: -58.02 SS G_CDS: -1.91 Total: -59.93 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.94 kcal Total: -70.09 3.02 -67.08 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261231264.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.021 kcal (2) G-P(sol) polarization free energy of solvation -70.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds