Wall clock time and date at job start Mon Mar 30 2020 03:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86797 * 120.00202 * 2 1 4 4 H 1.48506 * 109.47362 * 239.99579 * 3 2 1 5 5 H 1.48501 * 109.47284 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47245 * 119.99833 * 3 2 1 7 7 C 1.37881 * 120.00252 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00648 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99573 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46949 * 180.02562 * 9 7 2 11 11 H 1.09003 * 108.69290 * 303.35821 * 10 9 7 12 12 C 1.50980 * 108.81598 * 61.71815 * 10 9 7 13 13 C 1.54628 * 109.22311 * 213.18452 * 12 10 9 14 14 O 1.36324 * 111.07873 * 285.36048 * 13 12 10 15 15 C 1.43395 * 118.03519 * 61.88014 * 14 13 12 16 16 C 1.51069 * 107.45837 * 276.34526 * 15 14 13 17 17 C 1.53466 * 111.29331 * 94.49237 * 16 15 14 18 18 H 1.09005 * 109.04562 * 79.72507 * 17 16 15 19 19 O 1.42897 * 109.04543 * 198.68276 * 17 16 15 20 20 H 0.96994 * 119.99402 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.46406 * 60.00502 * 9 7 2 22 22 H 1.08992 * 109.47225 * 300.00483 * 9 7 2 23 23 H 1.08999 * 109.50886 * 333.10414 * 12 10 9 24 24 H 1.08991 * 109.51126 * 93.25731 * 12 10 9 25 25 H 1.08991 * 109.15640 * 164.94666 * 13 12 10 26 26 H 1.09007 * 109.15508 * 45.77055 * 13 12 10 27 27 H 1.08991 * 109.85926 * 35.83668 * 15 14 13 28 28 H 1.09000 * 109.85463 * 156.85867 * 15 14 13 29 29 H 1.09004 * 109.11624 * 214.95566 * 16 15 14 30 30 H 1.09001 * 109.11801 * 334.08869 * 16 15 14 31 31 H 0.96702 * 113.99608 * 299.99712 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9038 -3.5587 -0.8630 12 6 3.0763 -3.5922 1.2580 13 6 4.5012 -4.1118 0.9566 14 8 4.5126 -5.4697 0.8365 15 6 3.7344 -6.0600 -0.2133 16 6 2.3164 -6.1894 0.2916 17 6 1.4634 -4.9846 -0.1278 18 1 1.1509 -5.1134 -1.1641 19 8 0.3034 -4.9223 0.7043 20 1 -0.4849 0.8400 -0.0004 21 1 0.6241 -2.5566 -0.8904 22 1 0.6246 -2.5571 0.8896 23 1 3.1306 -2.5592 1.6014 24 1 2.6193 -4.2101 2.0308 25 1 5.1677 -3.8189 1.7677 26 1 4.8546 -3.6674 0.0262 27 1 3.7564 -5.4201 -1.0953 28 1 4.1312 -7.0450 -0.4594 29 1 1.8742 -7.0988 -0.1154 30 1 2.3295 -6.2549 1.3795 31 1 -0.2596 -5.7069 0.6536 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261245214.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:38 Heat of formation + Delta-G solvation = -135.611189 kcal Electronic energy + Delta-G solvation = -13634.767123 eV Core-core repulsion = 11300.673950 eV Total energy + Delta-G solvation = -2334.093173 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.93555 -38.08102 -35.92111 -34.04137 -33.03266 -30.03911 -27.23866 -25.98919 -23.65262 -22.72267 -20.30595 -18.69815 -17.94515 -17.30793 -17.24014 -16.43712 -16.39170 -15.33541 -14.62472 -14.33769 -14.10594 -13.99783 -13.72285 -12.89755 -12.80029 -12.54873 -12.47298 -12.21514 -11.98923 -11.72037 -11.42275 -11.01960 -10.86686 -10.61448 -10.50592 -10.28649 -8.16458 -6.27033 1.38685 1.42129 1.49679 2.41391 2.95864 3.15741 3.50106 3.83395 3.99393 4.00615 4.13608 4.33763 4.52228 4.61254 4.63284 4.73732 4.85983 4.97052 5.12469 5.16508 5.28831 5.38875 5.50551 5.54164 5.83688 5.94178 6.27592 6.69046 6.87874 7.07058 7.40887 8.95342 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.044435 B = 0.010539 C = 0.008944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 629.979171 B = 2656.083207 C = 3129.666710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.962 3.038 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.534 4.534 8 H 0.064 0.936 9 C 0.047 3.953 10 C -0.075 4.075 11 H 0.063 0.937 12 C -0.143 4.143 13 C 0.082 3.918 14 O -0.396 6.396 15 C 0.065 3.935 16 C -0.172 4.172 17 C 0.106 3.894 18 H 0.051 0.949 19 O -0.580 6.580 20 H 0.261 0.739 21 H -0.024 1.024 22 H -0.011 1.011 23 H 0.063 0.937 24 H 0.054 0.946 25 H 0.102 0.898 26 H 0.037 0.963 27 H 0.056 0.944 28 H 0.123 0.877 29 H 0.099 0.901 30 H 0.071 0.929 31 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.047 -11.926 -0.648 13.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.787 3.213 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.572 4.572 8 H 0.082 0.918 9 C 0.010 3.990 10 C -0.094 4.094 11 H 0.081 0.919 12 C -0.180 4.180 13 C 0.004 3.996 14 O -0.314 6.314 15 C -0.011 4.011 16 C -0.209 4.209 17 C 0.048 3.952 18 H 0.069 0.931 19 O -0.387 6.387 20 H 0.070 0.930 21 H -0.006 1.006 22 H 0.007 0.993 23 H 0.082 0.918 24 H 0.073 0.927 25 H 0.120 0.880 26 H 0.055 0.945 27 H 0.074 0.926 28 H 0.141 0.859 29 H 0.118 0.882 30 H 0.089 0.911 31 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 7.253 -11.343 -0.388 13.469 hybrid contribution -0.695 0.840 -0.343 1.143 sum 6.558 -10.503 -0.731 12.404 Atomic orbital electron populations 1.70134 1.07950 1.27542 1.51986 1.26011 0.95699 1.03378 0.95049 0.85544 0.78279 0.78232 0.79264 1.18995 1.21111 1.19079 1.21697 0.93485 0.92156 1.49865 0.91776 1.18803 0.93698 0.92336 0.94130 1.21092 0.96583 0.93858 0.97820 0.91899 1.22200 0.96560 1.01775 0.97502 1.21771 0.95242 0.81522 1.01057 1.86265 1.69869 1.21190 1.54105 1.22571 0.89730 0.99466 0.89285 1.22664 0.97020 0.98418 1.02845 1.22334 0.85650 0.94548 0.92689 0.93131 1.86709 1.37650 1.45895 1.68425 0.93025 1.00553 0.99270 0.91808 0.92678 0.87978 0.94532 0.92601 0.85916 0.88242 0.91051 0.76806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.21 13.29 21.45 0.28 -58.92 16 2 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 3 Si 0.96 45.19 29.54 68.60 2.03 47.21 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.53 -30.97 7.91 25.60 0.20 -30.77 16 8 H 0.06 3.50 7.21 -2.91 -0.02 3.48 16 9 C 0.05 2.64 3.89 29.85 0.12 2.75 16 10 C -0.08 -3.18 1.55 -11.06 -0.02 -3.19 16 11 H 0.06 2.59 6.61 -2.39 -0.02 2.57 16 12 C -0.14 -5.63 4.93 30.49 0.15 -5.48 16 13 C 0.08 2.59 6.39 72.54 0.46 3.06 16 14 O -0.40 -11.69 9.90 -97.27 -0.96 -12.65 16 15 C 0.06 1.57 6.48 71.35 0.46 2.03 16 16 C -0.17 -4.39 5.04 30.12 0.15 -4.23 16 17 C 0.11 3.66 3.14 31.14 0.10 3.75 16 18 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 19 O -0.58 -21.64 11.97 -148.98 -1.78 -23.42 16 20 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 21 H -0.02 -1.46 8.14 -2.39 -0.02 -1.48 16 22 H -0.01 -0.70 7.51 -2.39 -0.02 -0.72 16 23 H 0.06 2.87 6.33 -2.39 -0.02 2.85 16 24 H 0.05 2.21 7.16 -2.39 -0.02 2.19 16 25 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 26 H 0.04 1.15 7.68 -2.38 -0.02 1.13 16 27 H 0.06 1.40 6.67 -2.39 -0.02 1.38 16 28 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 30 H 0.07 2.04 7.30 -2.39 -0.02 2.02 16 31 H 0.38 9.75 9.08 -74.06 -0.67 9.07 16 Total: -1.00 -70.91 245.37 2.10 -68.81 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.44 Total: 10.84 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: 2.09 Total: -31.87 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.28 Total: -58.92 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -2.75 Total: -36.07 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -70.91 2.10 -68.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261245214.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.800 kcal (2) G-P(sol) polarization free energy of solvation -70.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds