Wall clock time and date at job start Mon Mar 30 2020 02:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37978 * 120.02378 * 2 1 4 4 C 1.38300 * 120.29234 * 180.02562 * 3 2 1 5 5 C 1.38429 * 120.07468 * 0.06415 * 4 3 2 6 6 C 1.37722 * 120.00401 * 359.91714 * 5 4 3 7 7 C 1.39340 * 120.37215 * 0.06209 * 6 5 4 8 8 C 1.48215 * 109.09661 * 179.75712 * 7 6 5 9 9 C 1.40934 * 124.85792 * 180.29020 * 8 7 6 10 10 H 1.07998 * 120.00462 * 334.11826 * 9 8 7 11 11 C 1.40027 * 119.99633 * 154.11730 * 9 8 7 12 12 N 1.30789 * 120.00151 * 165.83877 * 11 9 8 13 13 Si 1.86801 * 120.00027 * 345.83498 * 11 9 8 14 14 H 1.48500 * 109.47057 * 88.27597 * 13 11 9 15 15 H 1.48502 * 109.47352 * 208.27800 * 13 11 9 16 16 H 1.48504 * 109.47034 * 328.27575 * 13 11 9 17 17 C 1.35868 * 110.28119 * 0.39822 * 8 7 6 18 18 C 1.50912 * 132.64075 * 180.02562 * 6 5 4 19 19 H 1.09002 * 109.46754 * 264.02899 * 1 2 3 20 20 H 1.09002 * 109.46896 * 24.02793 * 1 2 3 21 21 H 1.09004 * 109.47441 * 144.02901 * 1 2 3 22 22 H 1.08005 * 119.85646 * 0.02562 * 3 2 1 23 23 H 1.08003 * 119.96005 * 180.02562 * 4 3 2 24 24 H 1.08001 * 119.99805 * 179.97438 * 5 4 3 25 25 H 0.96997 * 120.00003 * 179.97438 * 12 11 9 26 26 H 1.07991 * 126.11422 * 179.87851 * 17 8 7 27 27 H 1.08997 * 110.17435 * 60.91797 * 18 6 5 28 28 H 1.09002 * 110.16764 * 299.11991 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1946 0.0000 4 6 3.5804 1.2011 -0.0005 5 6 4.2797 0.0065 -0.0024 6 6 3.5983 -1.1904 -0.0020 7 6 2.2050 -1.2079 -0.0011 8 6 1.7378 -2.6144 -0.0068 9 6 0.3863 -3.0142 -0.0133 10 1 -0.3719 -2.3617 0.3936 11 6 0.0267 -4.2576 -0.5476 12 7 -1.1611 -4.7518 -0.3120 13 14 1.2434 -5.2106 -1.5969 14 1 2.0856 -6.0670 -0.7237 15 1 0.5036 -6.0634 -2.5616 16 1 2.1083 -4.2589 -2.3395 17 6 2.7987 -3.4632 -0.0024 18 6 4.0573 -2.6280 -0.0032 19 1 -0.3633 -0.1069 1.0221 20 1 -0.3633 0.9386 -0.4185 21 1 -0.3634 -0.8317 -0.6036 22 1 1.6554 2.1289 0.0004 23 1 4.1154 2.1394 -0.0001 24 1 5.3597 0.0130 -0.0032 25 1 -1.4103 -5.6129 -0.6824 26 1 2.7508 -4.5420 -0.0031 27 1 4.6465 -2.8352 0.8901 28 1 4.6448 -2.8342 -0.8978 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261312327.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:56 Heat of formation + Delta-G solvation = 29.224712 kcal Electronic energy + Delta-G solvation = -12212.550805 eV Core-core repulsion = 10192.914372 eV Total energy + Delta-G solvation = -2019.636432 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 200.090 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.38262 -35.27278 -33.32252 -32.11234 -28.79365 -27.35491 -26.33148 -23.41399 -21.01515 -19.98777 -19.00875 -16.59730 -15.29670 -14.69268 -14.30909 -13.91252 -13.64124 -12.92875 -12.59546 -12.48801 -12.25910 -11.52086 -11.37335 -11.18521 -11.00589 -10.82038 -10.29834 -10.00461 -9.75082 -9.54383 -9.18189 -8.55326 -7.92417 -7.03195 -6.77110 -4.37620 1.84706 2.07154 3.15138 3.27817 3.40941 3.66641 4.15457 4.55379 5.31406 5.32903 5.48741 5.61119 5.74631 5.98532 6.09555 6.29789 6.33369 6.41977 6.56715 6.59885 6.74888 6.77830 6.96153 7.04159 7.20409 7.26018 7.55730 7.73383 7.87384 7.94745 8.55576 8.78849 8.98001 10.25078 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.041070 B = 0.013548 C = 0.010703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.591823 B = 2066.255418 C = 2615.417733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.068 4.068 3 C -0.136 4.136 4 C -0.135 4.135 5 C -0.121 4.121 6 C -0.100 4.100 7 C -0.042 4.042 8 C 0.077 3.923 9 C -0.442 4.442 10 H 0.094 0.906 11 C 0.085 3.915 12 N -0.824 5.824 13 Si 0.922 3.078 14 H -0.273 1.273 15 H -0.302 1.302 16 H -0.248 1.248 17 C -0.410 4.410 18 C -0.020 4.020 19 H 0.064 0.936 20 H 0.048 0.952 21 H 0.091 0.909 22 H 0.113 0.887 23 H 0.113 0.887 24 H 0.110 0.890 25 H 0.282 0.718 26 H 0.118 0.882 27 H 0.064 0.936 28 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.598 6.375 -0.841 8.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.068 4.068 3 C -0.154 4.154 4 C -0.153 4.153 5 C -0.139 4.139 6 C -0.100 4.100 7 C -0.042 4.042 8 C 0.074 3.926 9 C -0.471 4.471 10 H 0.112 0.888 11 C -0.132 4.132 12 N -0.450 5.450 13 Si 0.751 3.249 14 H -0.200 1.200 15 H -0.231 1.231 16 H -0.171 1.171 17 C -0.431 4.431 18 C -0.056 4.056 19 H 0.082 0.918 20 H 0.067 0.933 21 H 0.109 0.891 22 H 0.131 0.869 23 H 0.131 0.869 24 H 0.128 0.872 25 H 0.092 0.908 26 H 0.135 0.865 27 H 0.082 0.918 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.361 6.236 -0.855 8.268 hybrid contribution 0.473 -0.481 -0.424 0.797 sum 5.834 5.756 -1.279 8.295 Atomic orbital electron populations 1.20948 0.91499 1.02387 1.02526 1.19752 0.96086 0.91791 0.99139 1.20759 0.94098 0.96796 1.03762 1.20854 0.94154 0.97002 1.03258 1.20225 0.98787 0.91351 1.03553 1.20740 0.95100 0.95243 0.98947 1.20148 0.93164 0.93993 0.96944 1.17976 0.93730 0.87887 0.92967 1.19218 0.92438 1.01159 1.34255 0.88827 1.26049 0.95577 0.96463 0.95120 1.69643 1.20641 1.17710 1.36977 0.86139 0.79777 0.79175 0.79793 1.20008 1.23055 1.17148 1.22879 0.92358 0.96750 1.31111 1.19317 0.97971 0.89026 0.99285 0.91759 0.93270 0.89063 0.86941 0.86933 0.87214 0.90760 0.86471 0.91809 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.26 8.79 36.01 0.32 -1.94 15 2 C -0.07 -1.41 5.91 -104.24 -0.62 -2.02 15 3 C -0.14 -2.42 9.65 -39.65 -0.38 -2.81 15 4 C -0.13 -2.26 10.05 -39.49 -0.40 -2.66 15 5 C -0.12 -2.20 10.03 -39.70 -0.40 -2.60 15 6 C -0.10 -2.16 6.33 -104.30 -0.66 -2.82 15 7 C -0.04 -1.00 6.06 -104.91 -0.64 -1.63 15 8 C 0.08 1.99 5.38 -105.63 -0.57 1.42 15 9 C -0.44 -12.08 8.48 -37.89 -0.32 -12.40 15 10 H 0.09 2.60 6.00 -52.49 -0.32 2.28 15 11 C 0.08 2.28 5.50 -17.33 -0.10 2.19 15 12 N -0.82 -22.57 13.93 55.55 0.77 -21.80 15 13 Si 0.92 22.03 24.63 -169.99 -4.19 17.84 15 14 H -0.27 -6.42 6.51 56.52 0.37 -6.05 15 15 H -0.30 -6.97 7.11 56.52 0.40 -6.57 15 16 H -0.25 -6.04 6.85 56.52 0.39 -5.65 15 17 C -0.41 -10.20 8.43 -34.99 -0.29 -10.50 15 18 C -0.02 -0.43 6.73 -28.76 -0.19 -0.62 15 19 H 0.06 1.21 8.14 -51.93 -0.42 0.79 15 20 H 0.05 0.79 8.04 -51.93 -0.42 0.37 15 21 H 0.09 1.96 5.87 -51.93 -0.30 1.66 15 22 H 0.11 1.67 8.06 -52.48 -0.42 1.25 15 23 H 0.11 1.51 8.06 -52.48 -0.42 1.08 15 24 H 0.11 1.67 8.06 -52.49 -0.42 1.25 15 25 H 0.28 7.08 8.29 -40.82 -0.34 6.74 15 26 H 0.12 2.95 4.55 -52.49 -0.24 2.71 15 27 H 0.06 1.25 8.14 -51.93 -0.42 0.83 15 28 H 0.06 1.17 8.14 -51.93 -0.42 0.75 15 LS Contribution 231.72 15.07 3.49 3.49 Total: -1.00 -28.24 231.72 -7.16 -35.41 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -3.00 Total: 1.43 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: -4.25 Total: -36.38 kcal Atomic # 7 Polarization: -22.57 SS G_CDS: 0.77 Total: -21.80 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.19 Total: 17.84 kcal Total LS contribution 3.49 Total: 3.49 kcal Total: -28.24 -7.16 -35.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261312327.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.631 kcal (2) G-P(sol) polarization free energy of solvation -28.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds