Wall clock time and date at job start Mon Mar 30 2020 02:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30758 * 1 3 3 Si 1.86800 * 119.99924 * 2 1 4 4 H 1.48504 * 109.47346 * 275.34798 * 3 2 1 5 5 H 1.48506 * 109.47003 * 35.34842 * 3 2 1 6 6 H 1.48501 * 109.47205 * 155.34448 * 3 2 1 7 7 C 1.40092 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00158 * 341.52709 * 7 2 1 9 9 C 1.40756 * 119.99910 * 161.80664 * 7 2 1 10 10 C 1.41065 * 120.79689 * 330.18915 * 9 7 2 11 11 C 1.36320 * 119.92873 * 179.73089 * 10 9 7 12 12 C 1.38899 * 121.57014 * 0.55969 * 11 10 9 13 13 C 1.37762 * 121.06902 * 359.73915 * 12 11 10 14 14 C 1.39547 * 119.78837 * 359.94823 * 13 12 11 15 15 C 1.46913 * 119.44401 * 180.02562 * 14 13 12 16 16 C 1.33193 * 119.39170 * 18.83099 * 15 14 13 17 17 C 1.50341 * 120.96130 * 0.49935 * 16 15 14 18 18 C 1.50567 * 120.92975 * 179.87783 * 13 12 11 19 19 H 0.96999 * 120.00069 * 359.97438 * 1 2 3 20 20 H 1.07995 * 120.02820 * 359.96869 * 10 9 7 21 21 H 1.07999 * 119.20760 * 180.30354 * 11 10 9 22 22 H 1.08001 * 119.46555 * 179.71412 * 12 11 10 23 23 H 1.08002 * 120.30240 * 198.83147 * 15 14 13 24 24 H 1.08004 * 119.52319 * 180.49688 * 16 15 14 25 25 H 1.08990 * 109.21631 * 204.06429 * 17 16 15 26 26 H 1.09001 * 109.17646 * 84.70868 * 17 16 15 27 27 H 1.08998 * 109.41170 * 265.72761 * 18 13 12 28 28 H 1.09006 * 109.41099 * 25.49930 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.3761 2.1117 -1.3940 5 1 1.5000 2.6174 0.8100 6 1 3.5910 1.4103 0.5841 7 6 2.0080 -1.2132 -0.0005 8 1 1.5098 -2.1246 0.2954 9 6 3.3628 -1.2435 -0.3812 10 6 3.8723 -0.3145 -1.3125 11 6 5.1887 -0.3565 -1.6643 12 6 6.0530 -1.3063 -1.1351 13 6 5.6104 -2.2423 -0.2264 14 6 4.2737 -2.2416 0.1743 15 6 3.8100 -3.2429 1.1442 16 6 4.7004 -3.8786 1.9039 17 6 6.1691 -3.5779 1.7901 18 6 6.5494 -3.2723 0.3433 19 1 -0.4850 0.8400 0.0004 20 1 3.2210 0.4315 -1.7432 21 1 5.5675 0.3635 -2.3747 22 1 7.0887 -1.3113 -1.4412 23 1 2.7567 -3.4615 1.2404 24 1 4.3626 -4.6209 2.6119 25 1 6.7395 -4.4394 2.1370 26 1 6.4072 -2.7156 2.4128 27 1 6.4860 -4.1863 -0.2472 28 1 7.5698 -2.8904 0.3092 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261323621.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:06 Heat of formation + Delta-G solvation = 15.084763 kcal Electronic energy + Delta-G solvation = -12185.541349 eV Core-core repulsion = 10165.291762 eV Total energy + Delta-G solvation = -2020.249587 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 200.090 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -38.47106 -35.22795 -33.65006 -31.39256 -29.00362 -28.75717 -25.02976 -22.82906 -21.30647 -20.42189 -17.55032 -16.90684 -15.83599 -14.81317 -14.47947 -14.20784 -13.21704 -13.00236 -12.88514 -12.09117 -11.89889 -11.65951 -11.54845 -11.29113 -10.87435 -10.55640 -10.44179 -10.11982 -9.70776 -9.33991 -9.16542 -8.90056 -7.55593 -7.08766 -6.98198 -4.51847 2.07186 2.63962 3.06434 3.12613 3.28404 3.61292 3.91714 4.45925 5.35935 5.48296 5.54507 5.80430 6.00467 6.08646 6.19114 6.22299 6.34480 6.36239 6.57104 6.63968 6.75426 6.79177 7.14404 7.30342 7.42040 7.50259 7.79200 7.82625 7.93093 8.11617 8.25725 8.62343 8.69721 9.92024 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.039488 B = 0.013412 C = 0.010965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.910578 B = 2087.252247 C = 2552.858114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.084 3.916 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.242 1.242 7 C -0.428 4.428 8 H 0.095 0.905 9 C 0.111 3.889 10 C -0.246 4.246 11 C -0.066 4.066 12 C -0.250 4.250 13 C -0.029 4.029 14 C -0.183 4.183 15 C -0.047 4.047 16 C -0.233 4.233 17 C -0.072 4.072 18 C -0.075 4.075 19 H 0.288 0.712 20 H 0.100 0.900 21 H 0.090 0.910 22 H 0.092 0.908 23 H 0.109 0.891 24 H 0.098 0.902 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.806 -1.346 1.036 7.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.137 4.137 3 Si 0.740 3.260 4 H -0.195 1.195 5 H -0.217 1.217 6 H -0.165 1.165 7 C -0.456 4.456 8 H 0.113 0.887 9 C 0.108 3.892 10 C -0.264 4.264 11 C -0.084 4.084 12 C -0.269 4.269 13 C -0.029 4.029 14 C -0.184 4.184 15 C -0.065 4.065 16 C -0.251 4.251 17 C -0.109 4.109 18 C -0.112 4.112 19 H 0.099 0.901 20 H 0.118 0.882 21 H 0.109 0.891 22 H 0.110 0.890 23 H 0.127 0.873 24 H 0.116 0.884 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.512 -1.258 1.057 6.717 hybrid contribution 0.068 0.791 -0.095 0.800 sum 6.581 -0.467 0.961 6.667 Atomic orbital electron populations 1.69656 1.08232 1.30683 1.33316 1.26266 0.94749 1.02031 0.90649 0.86271 0.81447 0.79328 0.79003 1.19452 1.21655 1.16536 1.19434 0.93017 0.96136 1.36964 0.88702 1.18680 0.91966 0.90015 0.88552 1.20741 0.95847 1.05054 1.04806 1.20285 0.93740 0.96766 0.97639 1.19990 0.98290 1.01684 1.06953 1.19496 0.93187 0.94806 0.95376 1.19539 0.92131 1.02743 1.03990 1.21455 0.98120 0.93277 0.93661 1.22758 0.94503 1.04243 1.03621 1.20134 0.94449 1.00087 0.96197 1.20321 0.97453 0.97629 0.95806 0.90119 0.88216 0.89134 0.88997 0.87310 0.88423 0.92450 0.92177 0.91763 0.91894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.72 13.92 55.56 0.77 -19.95 15 2 C 0.08 2.17 5.42 -17.31 -0.09 2.07 15 3 Si 0.91 20.71 24.53 -169.99 -4.17 16.54 15 4 H -0.27 -5.89 6.71 56.52 0.38 -5.51 15 5 H -0.29 -6.27 7.11 56.52 0.40 -5.87 15 6 H -0.24 -5.72 6.86 56.52 0.39 -5.34 15 7 C -0.43 -11.46 9.07 -37.94 -0.34 -11.81 15 8 H 0.10 2.62 7.00 -52.48 -0.37 2.26 15 9 C 0.11 2.87 5.26 -104.72 -0.55 2.32 15 10 C -0.25 -6.01 7.16 -39.20 -0.28 -6.29 15 11 C -0.07 -1.47 9.90 -40.03 -0.40 -1.87 15 12 C -0.25 -5.39 9.68 -39.51 -0.38 -5.77 15 13 C -0.03 -0.63 5.67 -104.37 -0.59 -1.22 15 14 C -0.18 -4.41 5.96 -102.75 -0.61 -5.02 15 15 C -0.05 -1.03 9.43 -37.83 -0.36 -1.39 15 16 C -0.23 -4.39 10.06 -36.24 -0.36 -4.75 15 17 C -0.07 -1.22 6.05 -28.22 -0.17 -1.39 15 18 C -0.08 -1.34 5.96 -28.11 -0.17 -1.51 15 19 H 0.29 6.76 8.29 -40.82 -0.34 6.42 15 20 H 0.10 2.40 4.77 -52.49 -0.25 2.15 15 21 H 0.09 1.75 8.06 -52.49 -0.42 1.32 15 22 H 0.09 1.73 8.06 -52.49 -0.42 1.31 15 23 H 0.11 2.37 6.96 -52.49 -0.37 2.00 15 24 H 0.10 1.62 8.06 -52.48 -0.42 1.19 15 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 15 26 H 0.06 1.03 8.14 -51.93 -0.42 0.61 15 27 H 0.06 1.10 8.14 -51.93 -0.42 0.67 15 28 H 0.06 1.00 8.07 -51.93 -0.42 0.58 15 LS Contribution 232.44 15.07 3.50 3.50 Total: -1.00 -27.03 232.44 -7.31 -34.34 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -3.11 Total: 2.20 kcal Atomic # 6 Polarization: -32.32 SS G_CDS: -4.31 Total: -36.63 kcal Atomic # 7 Polarization: -20.72 SS G_CDS: 0.77 Total: -19.95 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.17 Total: 16.54 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -27.03 -7.31 -34.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261323621.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.424 kcal (2) G-P(sol) polarization free energy of solvation -27.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds