Wall clock time and date at job start Mon Mar 30 2020 02:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30836 * 1 3 3 Si 1.86799 * 119.99751 * 2 1 4 4 H 1.48499 * 109.47269 * 239.99644 * 3 2 1 5 5 H 1.48496 * 109.47488 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46896 * 119.99980 * 3 2 1 7 7 C 1.39926 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99807 * 197.74551 * 7 2 1 9 9 C 1.41425 * 120.00080 * 17.75386 * 7 2 1 10 10 C 1.40808 * 120.17631 * 204.35099 * 9 7 2 11 11 C 1.37745 * 120.13897 * 179.97438 * 10 9 7 12 12 C 1.38286 * 120.31899 * 0.02562 * 11 10 9 13 13 C 1.40053 * 120.25540 * 0.02562 * 12 11 10 14 14 C 1.38706 * 120.20099 * 0.29768 * 13 12 11 15 15 C 1.47881 * 119.04289 * 180.02562 * 13 12 11 16 16 C 1.32505 * 119.46974 * 19.07304 * 15 13 12 17 17 C 1.50313 * 121.07631 * 0.44653 * 16 15 13 18 18 C 1.50673 * 120.53125 * 179.97438 * 12 11 10 19 19 H 0.97000 * 119.99784 * 0.02562 * 1 2 3 20 20 H 1.07994 * 119.92893 * 0.02562 * 10 9 7 21 21 H 1.07998 * 119.83856 * 180.02562 * 11 10 9 22 22 H 1.07997 * 120.28168 * 179.97438 * 14 13 12 23 23 H 1.08001 * 120.26099 * 199.04827 * 15 13 12 24 24 H 1.08000 * 119.46311 * 180.43938 * 16 15 13 25 25 H 1.09007 * 109.22375 * 203.75579 * 17 16 15 26 26 H 1.08994 * 109.22683 * 84.40843 * 17 16 15 27 27 H 1.09006 * 109.41373 * 265.54268 * 18 12 11 28 28 H 1.08999 * 109.41249 * 25.32588 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.0961 1.6965 -1.2124 5 1 1.2773 2.7465 -0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0494 -1.2340 0.2856 9 6 1.3513 -2.4076 -0.3724 10 6 1.8276 -3.6500 0.0883 11 6 1.1872 -4.8141 -0.2749 12 6 0.0737 -4.7720 -1.0939 13 6 -0.4122 -3.5445 -1.5616 14 6 0.2242 -2.3629 -1.2113 15 6 -1.6051 -3.5306 -2.4355 16 6 -2.4086 -4.5840 -2.4585 17 6 -2.1329 -5.7890 -1.6034 18 6 -0.6302 -6.0424 -1.4947 19 1 -0.4850 0.8401 -0.0004 20 1 2.6964 -3.6901 0.7285 21 1 1.5564 -5.7643 0.0816 22 1 -0.1491 -1.4157 -1.5716 23 1 -1.8199 -2.6686 -3.0497 24 1 -3.2759 -4.5766 -3.1021 25 1 -2.6125 -6.6615 -2.0473 26 1 -2.5424 -5.6234 -0.6070 27 1 -0.2483 -6.3797 -2.4583 28 1 -0.4459 -6.8110 -0.7441 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261324143.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:09 Heat of formation + Delta-G solvation = -0.612089 kcal Electronic energy + Delta-G solvation = -12016.460341 eV Core-core repulsion = 9995.530088 eV Total energy + Delta-G solvation = -2020.930253 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 200.090 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.14068 -37.08351 -35.04710 -32.73591 -31.12188 -29.66300 -27.13930 -23.98641 -22.84970 -22.31097 -19.63531 -18.19866 -17.29254 -16.40050 -16.02612 -15.60656 -15.07806 -14.60304 -14.14913 -13.69765 -13.39049 -13.21376 -13.06648 -12.76908 -12.57804 -12.25020 -12.00499 -11.93335 -11.23560 -11.09635 -10.96377 -10.51138 -9.20235 -8.76910 -8.54536 -6.32956 0.49120 1.04984 1.36285 1.46761 1.50054 1.89735 2.20207 2.77773 3.74704 4.01765 4.10087 4.39401 4.44175 4.60330 4.69360 4.82492 4.89551 5.06016 5.06527 5.15721 5.29070 5.36306 5.45955 5.63008 5.76349 5.85593 6.04723 6.13888 6.35646 6.39010 6.70010 6.93727 7.03304 8.33824 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.054162 B = 0.009950 C = 0.008675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.841182 B = 2813.385941 C = 3226.920468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.034 3.966 3 Si 0.984 3.016 4 H -0.261 1.261 5 H -0.267 1.267 6 H -0.259 1.259 7 C -0.505 4.505 8 H 0.074 0.926 9 C 0.070 3.930 10 C -0.244 4.244 11 C -0.095 4.095 12 C -0.202 4.202 13 C -0.063 4.063 14 C -0.173 4.173 15 C -0.135 4.135 16 C -0.148 4.148 17 C -0.086 4.086 18 C -0.056 4.056 19 H 0.287 0.713 20 H 0.096 0.904 21 H 0.122 0.878 22 H 0.101 0.899 23 H 0.109 0.891 24 H 0.138 0.862 25 H 0.101 0.899 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.068 -5.369 -3.176 6.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.180 4.180 3 Si 0.804 3.196 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.183 1.183 7 C -0.535 4.535 8 H 0.092 0.908 9 C 0.068 3.932 10 C -0.264 4.264 11 C -0.113 4.113 12 C -0.203 4.203 13 C -0.063 4.063 14 C -0.192 4.192 15 C -0.153 4.153 16 C -0.166 4.166 17 C -0.123 4.123 18 C -0.093 4.093 19 H 0.098 0.902 20 H 0.114 0.886 21 H 0.140 0.860 22 H 0.119 0.881 23 H 0.127 0.873 24 H 0.156 0.844 25 H 0.119 0.881 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.283 -5.228 -3.153 6.932 hybrid contribution 0.511 1.168 0.213 1.292 sum -2.772 -4.060 -2.940 5.728 Atomic orbital electron populations 1.69892 1.09051 1.30503 1.36103 1.26775 0.95495 1.04553 0.91187 0.85241 0.78765 0.75551 0.80055 1.18540 1.19086 1.18285 1.19790 0.98284 0.92572 1.42830 0.90753 1.17969 0.92194 0.93262 0.89725 1.21236 1.04415 0.93242 1.07488 1.20680 0.95575 0.97089 0.97921 1.19839 1.00061 0.94538 1.05891 1.19050 0.95843 0.93233 0.98171 1.21381 0.99573 0.96357 1.01904 1.21787 0.95226 0.99055 0.99222 1.23349 0.99056 0.94608 0.99605 1.20447 0.95868 0.96851 0.99125 1.20176 0.94314 0.93726 1.01041 0.90227 0.88554 0.86005 0.88123 0.87323 0.84448 0.88065 0.91817 0.91742 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.26 10.96 21.82 0.24 -45.02 15 2 C 0.03 1.79 5.14 85.25 0.44 2.23 15 3 Si 0.98 39.53 29.59 68.60 2.03 41.56 15 4 H -0.26 -10.27 7.11 99.48 0.71 -9.56 15 5 H -0.27 -10.07 7.11 99.48 0.71 -9.37 15 6 H -0.26 -10.01 7.11 99.48 0.71 -9.30 15 7 C -0.51 -28.57 9.05 23.46 0.21 -28.36 15 8 H 0.07 4.04 7.91 -2.91 -0.02 4.02 15 9 C 0.07 4.03 5.57 -21.30 -0.12 3.91 15 10 C -0.24 -12.64 9.78 22.78 0.22 -12.42 15 11 C -0.09 -4.31 9.68 22.16 0.21 -4.09 15 12 C -0.20 -8.97 5.70 -19.42 -0.11 -9.08 15 13 C -0.06 -3.07 5.77 -20.17 -0.12 -3.18 15 14 C -0.17 -9.63 8.46 22.95 0.19 -9.44 15 15 C -0.13 -5.46 9.89 23.69 0.23 -5.22 15 16 C -0.15 -4.75 10.02 24.43 0.24 -4.50 15 17 C -0.09 -2.50 6.05 29.65 0.18 -2.32 15 18 C -0.06 -1.84 5.96 29.76 0.18 -1.66 15 19 H 0.29 14.17 8.30 -92.71 -0.77 13.40 15 20 H 0.10 4.70 8.06 -2.91 -0.02 4.68 15 21 H 0.12 4.61 8.06 -2.91 -0.02 4.59 15 22 H 0.10 5.86 6.17 -2.91 -0.02 5.85 15 23 H 0.11 4.20 8.06 -2.91 -0.02 4.18 15 24 H 0.14 3.40 8.06 -2.91 -0.02 3.37 15 25 H 0.10 2.16 8.14 -2.38 -0.02 2.14 15 26 H 0.06 1.94 8.14 -2.39 -0.02 1.92 15 27 H 0.06 2.00 8.14 -2.38 -0.02 1.98 15 28 H 0.08 2.27 8.06 -2.39 -0.02 2.25 15 Total: -1.00 -62.64 240.03 5.18 -57.45 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: 1.14 Total: 20.14 kcal Atomic # 6 Polarization: -75.91 SS G_CDS: 1.77 Total: -74.14 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.24 Total: -45.02 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -62.64 5.18 -57.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261324143.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.843 kcal (2) G-P(sol) polarization free energy of solvation -62.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds