Wall clock time and date at job start Mon Mar 30 2020 03:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47165 * 2 1 4 4 S 1.81403 * 109.46986 * 119.99815 * 2 1 3 5 5 C 1.81401 * 103.00238 * 170.72224 * 4 2 1 6 6 C 1.50696 * 112.84718 * 304.81395 * 5 4 2 7 7 H 1.08000 * 120.00024 * 133.23174 * 6 5 4 8 8 C 1.37877 * 120.00341 * 312.96257 * 6 5 4 9 9 N 1.31506 * 120.00397 * 170.28953 * 8 6 5 10 10 Si 1.86803 * 119.99667 * 350.28988 * 8 6 5 11 11 H 1.48500 * 109.47250 * 92.48305 * 10 8 6 12 12 H 1.48501 * 109.47110 * 212.48238 * 10 8 6 13 13 H 1.48496 * 109.47071 * 332.47865 * 10 8 6 14 14 C 1.53784 * 113.68759 * 76.08249 * 5 4 2 15 15 C 1.53784 * 87.07683 * 139.99610 * 14 5 4 16 16 C 1.53778 * 113.61321 * 173.61766 * 5 4 2 17 17 H 1.08998 * 109.47418 * 300.00366 * 1 2 3 18 18 H 1.08998 * 109.46913 * 60.00485 * 1 2 3 19 19 H 1.08999 * 109.46885 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47418 * 239.99633 * 2 1 3 21 21 H 1.09001 * 109.46924 * 306.16467 * 3 2 1 22 22 H 1.09000 * 109.47145 * 66.16600 * 3 2 1 23 23 H 1.09002 * 109.46965 * 186.16560 * 3 2 1 24 24 H 0.96997 * 120.00378 * 179.97438 * 9 8 6 25 25 H 1.09002 * 113.61200 * 254.54115 * 14 5 4 26 26 H 1.09000 * 113.61434 * 25.44536 * 14 5 4 27 27 H 1.09005 * 113.61123 * 220.01769 * 15 14 5 28 28 H 1.08995 * 113.69095 * 89.12692 * 15 14 5 29 29 H 1.09003 * 113.61702 * 334.48497 * 16 5 4 30 30 H 1.09007 * 113.61175 * 105.30178 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 16 2.1347 -0.8551 1.4812 5 6 3.9153 -1.0036 1.1684 6 6 4.2249 -1.6880 -0.1379 7 1 4.9573 -1.2645 -0.8092 8 6 3.5771 -2.8579 -0.4738 9 7 3.7003 -3.3532 -1.6858 10 14 2.5244 -3.7393 0.7928 11 1 1.1174 -3.2796 0.6735 12 1 2.5882 -5.2041 0.5566 13 1 3.0307 -3.4352 2.1553 14 6 4.6905 0.3084 1.3755 15 6 5.7986 -0.5402 2.0213 16 6 4.7054 -1.5669 2.3614 17 1 -0.3634 0.5139 0.8899 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0277 0.0005 20 1 1.8934 -0.5139 -0.8899 21 1 1.5893 1.9871 -0.8297 22 1 1.7696 1.9234 0.9400 23 1 3.1244 1.4444 -0.1104 24 1 3.2449 -4.1764 -1.9220 25 1 4.9940 0.7877 0.4447 26 1 4.2070 0.9964 2.0690 27 1 6.2492 -0.0754 2.8983 28 1 6.5381 -0.9090 1.3106 29 1 4.2260 -1.3915 3.3246 30 1 5.0197 -2.6020 2.2273 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261324315.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:55 Heat of formation + Delta-G solvation = 3.587523 kcal Electronic energy + Delta-G solvation = -11670.232865 eV Core-core repulsion = 9784.928672 eV Total energy + Delta-G solvation = -1885.304193 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -37.75628 -34.00838 -32.41244 -27.13880 -26.68346 -24.73203 -22.75048 -21.05900 -18.40457 -16.86200 -15.39731 -14.96442 -14.73530 -13.86467 -13.43126 -12.79450 -12.65884 -12.01255 -11.81815 -11.72962 -11.49155 -11.09099 -10.88819 -10.71832 -10.51659 -10.18074 -9.85787 -9.66200 -9.32463 -9.29439 -8.52199 -8.43554 -6.47789 -6.19594 -4.23477 2.89392 3.44451 3.57399 3.67745 3.86474 4.53485 5.16507 5.52767 5.58782 5.62894 5.64761 5.87912 5.95013 6.05758 6.08647 6.22519 6.27340 6.39382 6.45967 6.50801 6.67451 6.77458 6.84942 6.93710 6.97930 7.23342 7.60049 8.31752 8.75719 9.40663 10.84578 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.025873 B = 0.022879 C = 0.016235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.964369 B = 1223.527875 C = 1724.282462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.039 4.039 3 C -0.138 4.138 4 S -0.356 6.356 5 C 0.095 3.905 6 C -0.500 4.500 7 H 0.080 0.920 8 C 0.090 3.910 9 N -0.879 5.879 10 Si 0.881 3.119 11 H -0.263 1.263 12 H -0.304 1.304 13 H -0.255 1.255 14 C -0.124 4.124 15 C -0.125 4.125 16 C -0.121 4.121 17 H 0.053 0.947 18 H 0.058 0.942 19 H 0.057 0.943 20 H 0.098 0.902 21 H 0.048 0.952 22 H 0.053 0.947 23 H 0.064 0.936 24 H 0.268 0.732 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.080 0.920 29 H 0.060 0.940 30 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.106 6.061 4.598 7.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C -0.197 4.197 4 S -0.123 6.123 5 C -0.012 4.012 6 C -0.541 4.541 7 H 0.098 0.902 8 C -0.118 4.118 9 N -0.514 5.514 10 Si 0.711 3.289 11 H -0.189 1.189 12 H -0.233 1.233 13 H -0.179 1.179 14 C -0.164 4.164 15 C -0.164 4.164 16 C -0.162 4.162 17 H 0.072 0.928 18 H 0.077 0.923 19 H 0.076 0.924 20 H 0.116 0.884 21 H 0.067 0.933 22 H 0.072 0.928 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.835 5.596 5.367 8.256 hybrid contribution 0.074 -0.240 -0.517 0.574 sum -2.761 5.357 4.850 7.736 Atomic orbital electron populations 1.21629 0.93981 1.02025 1.01139 1.22664 0.97059 0.97649 0.99343 1.22061 1.02060 0.94808 1.00782 1.86161 1.17919 1.77140 1.31053 1.21955 0.85249 0.96323 0.97717 1.20585 1.24806 1.08111 1.00598 0.90170 1.25026 0.95210 0.96488 0.95031 1.69944 1.42017 1.20880 1.18525 0.86435 0.82494 0.76980 0.83036 1.18852 1.23280 1.17906 1.23211 0.97159 0.96339 0.99704 1.22605 0.96253 0.98025 0.99516 1.23130 0.96721 0.99139 0.97247 0.92762 0.92320 0.92417 0.88364 0.93286 0.92762 0.91699 0.92270 0.92063 0.91189 0.93026 0.90104 0.92153 0.91448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 9.20 37.16 0.34 -1.91 16 2 C -0.04 -0.79 3.15 -26.73 -0.08 -0.87 16 3 C -0.14 -2.41 8.82 37.15 0.33 -2.08 16 4 S -0.36 -8.11 16.06 -107.50 -1.73 -9.84 16 5 C 0.09 2.19 0.49 -90.96 -0.04 2.15 16 6 C -0.50 -13.43 7.86 -34.44 -0.27 -13.70 16 7 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 8 C 0.09 2.53 5.40 -17.82 -0.10 2.43 16 9 N -0.88 -25.95 13.96 55.43 0.77 -25.18 16 10 Si 0.88 22.58 23.94 -169.99 -4.07 18.52 16 11 H -0.26 -6.79 6.96 56.52 0.39 -6.39 16 12 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 13 H -0.25 -6.37 5.60 56.52 0.32 -6.06 16 14 C -0.12 -2.46 5.47 -25.92 -0.14 -2.60 16 15 C -0.13 -2.35 7.80 -25.92 -0.20 -2.55 16 16 C -0.12 -2.60 5.76 -25.92 -0.15 -2.75 16 17 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 18 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 19 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 20 H 0.10 2.31 7.54 -51.92 -0.39 1.92 16 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 23 H 0.06 1.19 5.83 -51.93 -0.30 0.89 16 24 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 25 H 0.06 1.21 7.43 -51.93 -0.39 0.83 16 26 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 29 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 30 H 0.07 1.52 7.27 -51.93 -0.38 1.14 16 LS Contribution 245.20 15.07 3.70 3.70 Total: -1.00 -28.63 245.20 -6.56 -35.19 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -4.91 Total: -0.48 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: -0.32 Total: -21.90 kcal Atomic # 7 Polarization: -25.95 SS G_CDS: 0.77 Total: -25.18 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -4.07 Total: 18.52 kcal Atomic # 16 Polarization: -8.11 SS G_CDS: -1.73 Total: -9.84 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -28.63 -6.56 -35.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261324315.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.774 kcal (2) G-P(sol) polarization free energy of solvation -28.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds