Wall clock time and date at job start Mon Mar 30 2020 03:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47165 * 2 1 4 4 S 1.81403 * 109.46986 * 119.99815 * 2 1 3 5 5 C 1.81401 * 103.00238 * 170.72224 * 4 2 1 6 6 C 1.50696 * 112.84718 * 304.81395 * 5 4 2 7 7 H 1.08000 * 120.00024 * 133.23174 * 6 5 4 8 8 C 1.37877 * 120.00341 * 312.96257 * 6 5 4 9 9 N 1.31506 * 120.00397 * 170.28953 * 8 6 5 10 10 Si 1.86803 * 119.99667 * 350.28988 * 8 6 5 11 11 H 1.48500 * 109.47250 * 92.48305 * 10 8 6 12 12 H 1.48501 * 109.47110 * 212.48238 * 10 8 6 13 13 H 1.48496 * 109.47071 * 332.47865 * 10 8 6 14 14 C 1.53784 * 113.68759 * 76.08249 * 5 4 2 15 15 C 1.53784 * 87.07683 * 139.99610 * 14 5 4 16 16 C 1.53778 * 113.61321 * 173.61766 * 5 4 2 17 17 H 1.08998 * 109.47418 * 300.00366 * 1 2 3 18 18 H 1.08998 * 109.46913 * 60.00485 * 1 2 3 19 19 H 1.08999 * 109.46885 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47418 * 239.99633 * 2 1 3 21 21 H 1.09001 * 109.46924 * 306.16467 * 3 2 1 22 22 H 1.09000 * 109.47145 * 66.16600 * 3 2 1 23 23 H 1.09002 * 109.46965 * 186.16560 * 3 2 1 24 24 H 0.96997 * 120.00378 * 179.97438 * 9 8 6 25 25 H 1.09002 * 113.61200 * 254.54115 * 14 5 4 26 26 H 1.09000 * 113.61434 * 25.44536 * 14 5 4 27 27 H 1.09005 * 113.61123 * 220.01769 * 15 14 5 28 28 H 1.08995 * 113.69095 * 89.12692 * 15 14 5 29 29 H 1.09003 * 113.61702 * 334.48497 * 16 5 4 30 30 H 1.09007 * 113.61175 * 105.30178 * 16 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 16 2.1347 -0.8551 1.4812 5 6 3.9153 -1.0036 1.1684 6 6 4.2249 -1.6880 -0.1379 7 1 4.9573 -1.2645 -0.8092 8 6 3.5771 -2.8579 -0.4738 9 7 3.7003 -3.3532 -1.6858 10 14 2.5244 -3.7393 0.7928 11 1 1.1174 -3.2796 0.6735 12 1 2.5882 -5.2041 0.5566 13 1 3.0307 -3.4352 2.1553 14 6 4.6905 0.3084 1.3755 15 6 5.7986 -0.5402 2.0213 16 6 4.7054 -1.5669 2.3614 17 1 -0.3634 0.5139 0.8899 18 1 -0.3633 0.5138 -0.8900 19 1 -0.3633 -1.0277 0.0005 20 1 1.8934 -0.5139 -0.8899 21 1 1.5893 1.9871 -0.8297 22 1 1.7696 1.9234 0.9400 23 1 3.1244 1.4444 -0.1104 24 1 3.2449 -4.1764 -1.9220 25 1 4.9940 0.7877 0.4447 26 1 4.2070 0.9964 2.0690 27 1 6.2492 -0.0754 2.8983 28 1 6.5381 -0.9090 1.3106 29 1 4.2260 -1.3915 3.3246 30 1 5.0197 -2.6020 2.2273 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261324315.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:54 Heat of formation + Delta-G solvation = -13.056504 kcal Electronic energy + Delta-G solvation = -11670.954604 eV Core-core repulsion = 9784.928672 eV Total energy + Delta-G solvation = -1886.025932 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.093 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.46511 -35.51976 -34.53101 -29.02919 -28.17786 -26.37198 -24.56914 -22.60267 -20.26056 -18.79373 -17.12936 -16.85401 -16.40092 -15.58401 -15.07054 -14.73257 -14.37590 -13.65796 -13.46891 -13.27019 -13.01643 -12.96776 -12.62528 -12.21147 -12.17064 -12.05990 -11.89861 -11.30652 -11.08199 -11.03431 -10.54230 -10.29495 -8.46378 -8.21136 -6.40981 1.13949 1.39989 1.51696 1.60604 2.02815 2.41340 3.06784 3.97275 4.00622 4.03631 4.12148 4.27893 4.28285 4.51125 4.75563 4.81234 4.87430 4.91248 4.92318 5.05496 5.13141 5.21792 5.26207 5.29747 5.38122 5.55420 5.71313 6.17065 6.58150 7.24535 8.71321 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.025873 B = 0.022879 C = 0.016235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.964369 B = 1223.527875 C = 1724.282462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.039 4.039 3 C -0.131 4.131 4 S -0.367 6.367 5 C 0.077 3.923 6 C -0.495 4.495 7 H 0.046 0.954 8 C 0.048 3.952 9 N -0.925 5.925 10 Si 0.925 3.075 11 H -0.267 1.267 12 H -0.309 1.309 13 H -0.244 1.244 14 C -0.112 4.112 15 C -0.112 4.112 16 C -0.124 4.124 17 H 0.071 0.929 18 H 0.086 0.914 19 H 0.040 0.960 20 H 0.057 0.943 21 H 0.074 0.926 22 H 0.071 0.929 23 H 0.051 0.949 24 H 0.267 0.733 25 H 0.056 0.944 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.716 7.775 6.334 10.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.167 4.167 3 C -0.189 4.189 4 S -0.134 6.134 5 C -0.031 4.031 6 C -0.535 4.535 7 H 0.065 0.935 8 C -0.155 4.155 9 N -0.562 5.562 10 Si 0.754 3.246 11 H -0.192 1.192 12 H -0.239 1.239 13 H -0.168 1.168 14 C -0.152 4.152 15 C -0.151 4.151 16 C -0.165 4.165 17 H 0.090 0.910 18 H 0.105 0.895 19 H 0.059 0.941 20 H 0.076 0.924 21 H 0.092 0.908 22 H 0.089 0.911 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.110 0.890 27 H 0.109 0.891 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.429 7.319 7.111 10.765 hybrid contribution 0.253 -0.689 -1.084 1.309 sum -3.177 6.630 6.027 9.506 Atomic orbital electron populations 1.21622 0.91550 1.01698 1.03395 1.22802 0.99083 0.98738 0.96100 1.21985 1.01261 0.92910 1.02767 1.86069 1.17012 1.78083 1.32220 1.22043 0.85789 0.98649 0.96583 1.20685 1.23403 1.07779 1.01630 0.93548 1.25591 0.96506 0.97362 0.96000 1.70030 1.44276 1.21796 1.20136 0.85739 0.81091 0.75834 0.81939 1.19190 1.23910 1.16751 1.23150 0.96745 0.95152 1.00114 1.22543 0.95339 0.96640 1.00551 1.23138 0.97457 0.98865 0.97010 0.90961 0.89530 0.94068 0.92399 0.90759 0.91052 0.93038 0.92354 0.92575 0.89003 0.89143 0.91155 0.90515 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.02 9.20 71.98 0.66 -3.36 16 2 C -0.04 -1.52 3.15 30.59 0.10 -1.42 16 3 C -0.13 -4.18 8.82 71.98 0.63 -3.55 16 4 S -0.37 -16.01 16.06 -56.49 -0.91 -16.91 16 5 C 0.08 3.48 0.49 -11.01 -0.01 3.47 16 6 C -0.49 -27.02 7.86 25.60 0.20 -26.82 16 7 H 0.05 2.80 8.06 -2.91 -0.02 2.77 16 8 C 0.05 2.75 5.40 84.66 0.46 3.21 16 9 N -0.92 -56.51 13.96 21.45 0.30 -56.21 16 10 Si 0.93 47.01 23.94 68.60 1.64 48.65 16 11 H -0.27 -13.52 6.96 99.48 0.69 -12.83 16 12 H -0.31 -15.82 7.11 99.48 0.71 -15.11 16 13 H -0.24 -11.80 5.60 99.48 0.56 -11.24 16 14 C -0.11 -4.16 5.47 31.12 0.17 -3.99 16 15 C -0.11 -3.90 7.80 31.12 0.24 -3.65 16 16 C -0.12 -5.05 5.76 31.12 0.18 -4.87 16 17 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 18 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 19 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 20 H 0.06 2.74 7.54 -2.39 -0.02 2.72 16 21 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 22 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 23 H 0.05 1.78 5.83 -2.39 -0.01 1.77 16 24 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 25 H 0.06 2.14 7.43 -2.39 -0.02 2.12 16 26 H 0.09 3.04 8.10 -2.39 -0.02 3.02 16 27 H 0.09 2.50 8.14 -2.38 -0.02 2.48 16 28 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.08 2.89 8.10 -2.39 -0.02 2.87 16 30 H 0.05 2.19 7.27 -2.38 -0.02 2.17 16 Total: -1.00 -62.16 245.20 4.59 -57.57 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: 0.92 Total: 7.88 kcal Atomic # 6 Polarization: -43.61 SS G_CDS: 2.64 Total: -40.97 kcal Atomic # 7 Polarization: -56.51 SS G_CDS: 0.30 Total: -56.21 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 1.64 Total: 48.65 kcal Atomic # 16 Polarization: -16.01 SS G_CDS: -0.91 Total: -16.91 kcal Total: -62.16 4.59 -57.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261324315.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.511 kcal (2) G-P(sol) polarization free energy of solvation -62.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds