Wall clock time and date at job start Mon Mar 30 2020 02:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.56128 * 116.83124 * 2 1 4 4 O 1.46925 * 101.82154 * 160.88466 * 3 2 1 5 5 C 1.45189 * 105.72117 * 0.31824 * 4 3 2 6 6 C 1.52998 * 114.49158 * 200.19940 * 5 4 3 7 7 C 1.50697 * 109.47409 * 298.14900 * 6 5 4 8 8 H 1.07999 * 119.99693 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99989 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99927 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 119.99867 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47160 * 60.00408 * 11 9 7 13 13 H 1.48498 * 109.46979 * 180.02562 * 11 9 7 14 14 H 1.48491 * 109.47475 * 300.00269 * 11 9 7 15 15 O 1.45191 * 106.11716 * 72.91772 * 5 4 3 16 16 C 1.44594 * 105.52383 * 286.70154 * 15 5 4 17 17 O 1.46268 * 102.56396 * 325.67976 * 5 4 3 18 18 H 1.09001 * 109.47002 * 183.82546 * 1 2 3 19 19 H 1.08993 * 109.46955 * 303.82984 * 1 2 3 20 20 H 1.09000 * 109.47050 * 63.82812 * 1 2 3 21 21 H 1.09004 * 110.72665 * 278.95058 * 3 2 1 22 22 H 1.08997 * 110.73144 * 42.24430 * 3 2 1 23 23 H 1.09005 * 109.46679 * 58.15105 * 6 5 4 24 24 H 1.09006 * 109.47002 * 178.14293 * 6 5 4 25 25 H 0.96996 * 120.00280 * 179.97438 * 10 9 7 26 26 H 1.08999 * 110.73055 * 241.86444 * 16 15 5 27 27 H 1.09001 * 110.88165 * 118.63777 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.2348 1.3932 0.0000 4 8 3.5831 1.0485 0.4709 5 6 3.5704 -0.3877 0.6834 6 6 4.6726 -0.9013 1.6120 7 6 6.0198 -0.5963 1.0093 8 1 6.0834 -0.0875 0.0588 9 6 7.1711 -0.9670 1.6714 10 7 7.0935 -1.5870 2.8285 11 14 8.8408 -0.5896 0.9240 12 1 8.9845 0.8781 0.7487 13 1 9.9106 -1.0880 1.8253 14 1 8.9550 -1.2592 -0.3965 15 8 3.5668 -0.9906 -0.6374 16 6 2.2349 -0.7755 -1.1574 17 8 2.2042 -0.6287 1.1468 18 1 -0.3633 -1.0254 0.0686 19 1 -0.3633 0.5721 0.8536 20 1 -0.3633 0.4533 -0.9223 21 1 2.2674 1.8090 -1.0071 22 1 1.7355 2.0781 0.6853 23 1 4.5888 -0.4104 2.5816 24 1 4.5672 -1.9787 1.7399 25 1 7.9034 -1.8481 3.2941 26 1 1.7357 -1.7261 -1.3447 27 1 2.2647 -0.1716 -2.0643 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261330726.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:49 Heat of formation + Delta-G solvation = -126.316996 kcal Electronic energy + Delta-G solvation = -13467.154439 eV Core-core repulsion = 10997.631198 eV Total energy + Delta-G solvation = -2469.523241 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.06348 -34.90117 -34.24610 -33.34151 -32.22569 -29.21618 -26.50725 -25.29673 -23.91386 -21.32905 -19.79090 -17.36983 -16.66243 -16.16080 -15.37088 -14.76349 -14.40746 -14.17406 -13.22569 -13.00522 -12.82659 -12.34170 -12.14836 -11.88659 -11.66588 -11.36863 -11.20030 -10.71929 -10.68436 -10.28489 -10.10441 -9.68547 -9.48174 -9.32759 -8.41445 -6.04451 -4.05576 3.38592 3.40388 3.44897 3.77156 4.06549 4.25416 4.41413 4.48930 4.52755 5.09486 5.25677 5.33981 5.42939 5.50385 5.63683 5.67081 5.79411 5.87800 6.00856 6.51100 6.79551 7.05446 7.47148 7.57007 7.94499 8.22271 8.96911 9.56503 11.07636 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.068644 B = 0.009880 C = 0.009594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.801325 B = 2833.423861 C = 2917.712859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.015 3.985 3 C 0.023 3.977 4 O -0.372 6.372 5 C 0.391 3.609 6 C 0.074 3.926 7 C -0.509 4.509 8 H 0.066 0.934 9 C 0.058 3.942 10 N -0.897 5.897 11 Si 0.905 3.095 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.275 1.275 15 O -0.368 6.368 16 C 0.023 3.977 17 O -0.381 6.381 18 H 0.074 0.926 19 H 0.073 0.927 20 H 0.080 0.920 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.264 0.736 26 H 0.079 0.921 27 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.822 3.508 -6.228 13.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.025 4.025 3 C -0.054 4.054 4 O -0.294 6.294 5 C 0.280 3.720 6 C 0.037 3.963 7 C -0.548 4.548 8 H 0.084 0.916 9 C -0.144 4.144 10 N -0.536 5.536 11 Si 0.733 3.267 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.201 1.201 15 O -0.290 6.290 16 C -0.055 4.055 17 O -0.304 6.304 18 H 0.093 0.907 19 H 0.092 0.908 20 H 0.099 0.901 21 H 0.101 0.899 22 H 0.101 0.899 23 H 0.070 0.930 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.097 0.903 27 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.413 3.339 -5.924 13.285 hybrid contribution 0.592 0.261 -0.514 0.826 sum -10.820 3.600 -6.438 13.095 Atomic orbital electron populations 1.21172 0.88394 1.03789 1.03264 1.25509 0.96427 0.93605 0.86969 1.24570 0.84789 0.95627 1.00411 1.89911 1.28552 1.25188 1.85787 1.27626 0.84276 0.78101 0.81959 1.18880 0.87924 0.97622 0.91859 1.20849 0.89115 1.38318 1.06477 0.91618 1.24959 0.99539 0.94969 0.94885 1.69940 1.29036 1.39934 1.14717 0.86435 0.82541 0.78809 0.78951 1.20054 1.21233 1.20062 1.89573 1.28366 1.78037 1.33062 1.24199 0.85214 1.00171 0.95891 1.90576 1.20845 1.77753 1.41216 0.90737 0.90779 0.90147 0.89869 0.89852 0.92991 0.92986 0.92628 0.90256 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 37.16 0.37 -0.80 15 2 C 0.01 0.24 2.01 -87.26 -0.18 0.06 15 3 C 0.02 0.39 7.33 38.83 0.28 0.67 15 4 O -0.37 -8.82 11.40 -67.70 -0.77 -9.59 15 5 C 0.39 9.68 2.03 37.16 0.08 9.76 15 6 C 0.07 2.08 5.35 -27.89 -0.15 1.93 15 7 C -0.51 -15.21 8.84 -34.44 -0.30 -15.51 15 8 H 0.07 1.98 7.74 -52.49 -0.41 1.57 15 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 10 N -0.90 -27.16 13.29 55.43 0.74 -26.42 15 11 Si 0.91 22.37 29.54 -169.99 -5.02 17.35 15 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 15 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 15 O -0.37 -8.73 11.31 -67.70 -0.77 -9.50 15 16 C 0.02 0.39 7.16 38.83 0.28 0.67 15 17 O -0.38 -8.40 11.88 -67.82 -0.81 -9.20 15 18 H 0.07 0.76 8.14 -51.93 -0.42 0.34 15 19 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 20 H 0.08 0.62 8.14 -51.93 -0.42 0.20 15 21 H 0.08 1.17 7.85 -51.93 -0.41 0.76 15 22 H 0.08 1.22 8.14 -51.93 -0.42 0.79 15 23 H 0.05 1.51 8.14 -51.93 -0.42 1.08 15 24 H 0.05 1.51 8.14 -51.93 -0.42 1.08 15 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 26 H 0.08 1.18 8.14 -51.93 -0.42 0.76 15 27 H 0.08 1.14 7.86 -51.93 -0.41 0.73 15 LS Contribution 235.68 15.07 3.55 3.55 Total: -1.00 -33.60 235.68 -6.11 -39.71 By element: Atomic # 1 Polarization: -0.97 SS G_CDS: -3.32 Total: -4.28 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 0.28 Total: -1.62 kcal Atomic # 7 Polarization: -27.16 SS G_CDS: 0.74 Total: -26.42 kcal Atomic # 8 Polarization: -25.95 SS G_CDS: -2.34 Total: -28.29 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -33.60 -6.11 -39.71 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261330726.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.609 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds