Wall clock time and date at job start Mon Mar 30 2020 02:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.56128 * 116.83124 * 2 1 4 4 O 1.46925 * 101.82154 * 160.88466 * 3 2 1 5 5 C 1.45189 * 105.72117 * 0.31824 * 4 3 2 6 6 C 1.52998 * 114.49158 * 200.19940 * 5 4 3 7 7 C 1.50697 * 109.47409 * 298.14900 * 6 5 4 8 8 H 1.07999 * 119.99693 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99989 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99927 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 119.99867 * 179.97438 * 9 7 6 12 12 H 1.48508 * 109.47160 * 60.00408 * 11 9 7 13 13 H 1.48498 * 109.46979 * 180.02562 * 11 9 7 14 14 H 1.48491 * 109.47475 * 300.00269 * 11 9 7 15 15 O 1.45191 * 106.11716 * 72.91772 * 5 4 3 16 16 C 1.44594 * 105.52383 * 286.70154 * 15 5 4 17 17 O 1.46268 * 102.56396 * 325.67976 * 5 4 3 18 18 H 1.09001 * 109.47002 * 183.82546 * 1 2 3 19 19 H 1.08993 * 109.46955 * 303.82984 * 1 2 3 20 20 H 1.09000 * 109.47050 * 63.82812 * 1 2 3 21 21 H 1.09004 * 110.72665 * 278.95058 * 3 2 1 22 22 H 1.08997 * 110.73144 * 42.24430 * 3 2 1 23 23 H 1.09005 * 109.46679 * 58.15105 * 6 5 4 24 24 H 1.09006 * 109.47002 * 178.14293 * 6 5 4 25 25 H 0.96996 * 120.00280 * 179.97438 * 10 9 7 26 26 H 1.08999 * 110.73055 * 241.86444 * 16 15 5 27 27 H 1.09001 * 110.88165 * 118.63777 * 16 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.2348 1.3932 0.0000 4 8 3.5831 1.0485 0.4709 5 6 3.5704 -0.3877 0.6834 6 6 4.6726 -0.9013 1.6120 7 6 6.0198 -0.5963 1.0093 8 1 6.0834 -0.0875 0.0588 9 6 7.1711 -0.9670 1.6714 10 7 7.0935 -1.5870 2.8285 11 14 8.8408 -0.5896 0.9240 12 1 8.9845 0.8781 0.7487 13 1 9.9106 -1.0880 1.8253 14 1 8.9550 -1.2592 -0.3965 15 8 3.5668 -0.9906 -0.6374 16 6 2.2349 -0.7755 -1.1574 17 8 2.2042 -0.6287 1.1468 18 1 -0.3633 -1.0254 0.0686 19 1 -0.3633 0.5721 0.8536 20 1 -0.3633 0.4533 -0.9223 21 1 2.2674 1.8090 -1.0071 22 1 1.7355 2.0781 0.6853 23 1 4.5888 -0.4104 2.5816 24 1 4.5672 -1.9787 1.7399 25 1 7.9034 -1.8481 3.2941 26 1 1.7357 -1.7261 -1.3447 27 1 2.2647 -0.1716 -2.0643 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261330726.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:44 Heat of formation + Delta-G solvation = -151.331273 kcal Electronic energy + Delta-G solvation = -13468.239140 eV Core-core repulsion = 10997.631198 eV Total energy + Delta-G solvation = -2470.607942 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.62342 -36.55856 -35.94460 -35.36477 -33.76724 -31.16484 -27.77567 -26.65769 -26.02302 -23.07519 -21.32361 -19.00818 -18.66416 -17.93497 -17.01373 -16.36522 -16.19748 -15.66436 -14.54028 -14.43552 -14.32713 -13.99349 -13.76146 -13.61039 -13.52457 -12.80908 -12.65235 -12.63589 -12.58612 -12.05026 -11.73513 -11.57642 -11.37572 -10.95435 -10.66895 -8.29396 -6.40464 1.39379 1.44583 1.52691 2.28128 2.33595 2.53033 2.79613 3.06240 3.16336 3.19562 3.75137 3.98087 4.39015 4.39667 4.42363 4.49414 4.60189 4.78725 4.87506 4.91888 5.02165 5.17295 5.55019 5.58950 5.68718 6.00812 6.66215 7.26564 8.83619 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.068644 B = 0.009880 C = 0.009594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 407.801325 B = 2833.423861 C = 2917.712859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.020 3.980 3 C 0.012 3.988 4 O -0.409 6.409 5 C 0.390 3.610 6 C 0.076 3.924 7 C -0.532 4.532 8 H 0.056 0.944 9 C 0.006 3.994 10 N -0.929 5.929 11 Si 0.978 3.022 12 H -0.267 1.267 13 H -0.273 1.273 14 H -0.267 1.267 15 O -0.404 6.404 16 C 0.010 3.990 17 O -0.405 6.405 18 H 0.080 0.920 19 H 0.082 0.918 20 H 0.121 0.879 21 H 0.116 0.884 22 H 0.105 0.895 23 H 0.027 0.973 24 H 0.027 0.973 25 H 0.270 0.730 26 H 0.099 0.901 27 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.735 4.413 -7.844 15.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.019 4.019 3 C -0.063 4.063 4 O -0.332 6.332 5 C 0.278 3.722 6 C 0.039 3.961 7 C -0.570 4.570 8 H 0.075 0.925 9 C -0.192 4.192 10 N -0.568 5.568 11 Si 0.801 3.199 12 H -0.192 1.192 13 H -0.198 1.198 14 H -0.192 1.192 15 O -0.327 6.327 16 C -0.066 4.066 17 O -0.329 6.329 18 H 0.099 0.901 19 H 0.101 0.899 20 H 0.139 0.861 21 H 0.134 0.866 22 H 0.123 0.877 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.079 0.921 26 H 0.117 0.883 27 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.365 4.249 -7.550 15.098 hybrid contribution 0.741 0.000 -0.045 0.742 sum -11.624 4.249 -7.595 14.521 Atomic orbital electron populations 1.21365 0.83846 1.04934 1.05821 1.26086 0.99118 0.92287 0.84364 1.25066 0.82027 0.96557 1.02676 1.89825 1.32576 1.24302 1.86522 1.26784 0.84404 0.78907 0.82082 1.18521 0.89576 0.95986 0.92011 1.21039 0.90441 1.39060 1.06465 0.92538 1.25948 1.03777 0.94286 0.95208 1.70053 1.30528 1.40308 1.15893 0.85305 0.77196 0.78977 0.78386 1.19192 1.19818 1.19204 1.89490 1.32211 1.78432 1.32550 1.24682 0.82648 1.02216 0.97066 1.90529 1.20114 1.78552 1.43665 0.90117 0.89903 0.86105 0.86603 0.87666 0.95445 0.95438 0.92078 0.88285 0.86938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.79 10.01 71.98 0.72 -1.07 15 2 C 0.02 0.61 2.01 -8.62 -0.02 0.59 15 3 C 0.01 0.38 7.33 73.07 0.54 0.92 15 4 O -0.41 -19.51 11.40 -117.94 -1.35 -20.85 15 5 C 0.39 19.80 2.03 71.98 0.15 19.94 15 6 C 0.08 4.52 5.35 29.85 0.16 4.68 15 7 C -0.53 -32.88 8.84 25.60 0.23 -32.65 15 8 H 0.06 3.51 7.74 -2.91 -0.02 3.49 15 9 C 0.01 0.38 5.46 84.66 0.46 0.84 15 10 N -0.93 -57.51 13.29 21.45 0.28 -57.23 15 11 Si 0.98 46.13 29.54 68.60 2.03 48.16 15 12 H -0.27 -12.18 7.11 99.48 0.71 -11.48 15 13 H -0.27 -12.21 7.11 99.48 0.71 -11.50 15 14 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 15 O -0.40 -19.28 11.31 -117.94 -1.33 -20.62 15 16 C 0.01 0.32 7.16 73.07 0.52 0.84 15 17 O -0.41 -17.95 11.88 -117.82 -1.40 -19.34 15 18 H 0.08 1.35 8.14 -2.39 -0.02 1.33 15 19 H 0.08 1.34 8.14 -2.39 -0.02 1.32 15 20 H 0.12 1.17 8.14 -2.39 -0.02 1.15 15 21 H 0.12 2.83 7.85 -2.38 -0.02 2.81 15 22 H 0.11 2.78 8.14 -2.39 -0.02 2.76 15 23 H 0.03 1.70 8.14 -2.38 -0.02 1.68 15 24 H 0.03 1.71 8.14 -2.38 -0.02 1.69 15 25 H 0.27 15.53 8.31 -92.71 -0.77 14.76 15 26 H 0.10 2.71 8.14 -2.39 -0.02 2.69 15 27 H 0.11 2.80 7.86 -2.39 -0.02 2.78 15 Total: -1.00 -75.93 235.68 2.14 -73.79 By element: Atomic # 1 Polarization: 0.84 SS G_CDS: 1.15 Total: 2.00 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: 2.76 Total: -5.91 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.28 Total: -57.23 kcal Atomic # 8 Polarization: -56.74 SS G_CDS: -4.08 Total: -60.82 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -75.93 2.14 -73.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261330726.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.541 kcal (2) G-P(sol) polarization free energy of solvation -75.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds