Wall clock time and date at job start Mon Mar 30 2020 03:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00072 * 2 1 4 4 H 1.48500 * 109.47475 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47267 * 299.99678 * 3 2 1 6 6 H 1.48502 * 109.47036 * 59.99525 * 3 2 1 7 7 C 1.37880 * 120.00169 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00254 * 185.50329 * 7 2 1 9 9 C 1.50704 * 119.99665 * 5.51078 * 7 2 1 10 10 H 1.08996 * 109.47471 * 5.16064 * 9 7 2 11 11 C 1.52994 * 109.46963 * 245.15667 * 9 7 2 12 12 O 1.42901 * 109.47309 * 63.62617 * 11 9 7 13 13 C 1.53005 * 109.47059 * 125.16246 * 9 7 2 14 14 H 1.08994 * 109.57479 * 59.83422 * 13 9 7 15 15 C 1.53323 * 109.50133 * 299.71209 * 13 9 7 16 16 C 1.53179 * 108.96071 * 183.14157 * 15 13 9 17 17 C 1.53096 * 109.21330 * 56.95509 * 16 15 13 18 18 O 1.42904 * 109.41750 * 302.35604 * 17 16 15 19 19 C 1.42905 * 114.09662 * 61.15485 * 18 17 16 20 20 H 0.96997 * 120.00374 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47350 * 183.62327 * 11 9 7 22 22 H 1.08998 * 109.47237 * 303.62515 * 11 9 7 23 23 H 0.96695 * 114.00074 * 180.02562 * 12 11 9 24 24 H 1.08995 * 109.62769 * 63.27203 * 15 13 9 25 25 H 1.08993 * 109.52693 * 302.95369 * 15 13 9 26 26 H 1.09000 * 109.52776 * 297.01843 * 16 15 13 27 27 H 1.09000 * 109.51952 * 176.88549 * 16 15 13 28 28 H 1.08994 * 109.48418 * 62.34064 * 17 16 15 29 29 H 1.09003 * 109.47738 * 182.36389 * 17 16 15 30 30 H 1.08999 * 109.47573 * 58.82612 * 19 18 17 31 31 H 1.08999 * 109.47992 * 178.84899 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0808 -1.1962 0.0902 9 6 1.2562 -2.4962 -0.1242 10 1 0.1992 -2.2929 -0.2957 11 6 1.4178 -3.3028 1.1657 12 8 0.8171 -2.5922 2.2503 13 6 1.8188 -3.2971 -1.3003 14 1 2.8766 -3.4989 -1.1319 15 6 1.6509 -2.4924 -2.5945 16 6 2.1456 -3.3365 -3.7731 17 6 1.3735 -4.6582 -3.8054 18 8 1.5474 -5.3404 -2.5618 19 6 1.0595 -4.6202 -1.4280 20 1 -0.4850 0.8400 -0.0004 21 1 0.9309 -4.2714 1.0521 22 1 2.4779 -3.4510 1.3713 23 1 0.8823 -3.0457 3.1018 24 1 2.2350 -1.5742 -2.5331 25 1 0.5984 -2.2479 -2.7375 26 1 3.2100 -3.5393 -3.6547 27 1 1.9793 -2.7948 -4.7042 28 1 0.3143 -4.4566 -3.9644 29 1 1.7511 -5.2800 -4.6172 30 1 -0.0039 -4.4181 -1.5560 31 1 1.2107 -5.2148 -0.5271 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261332551.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:43 Heat of formation + Delta-G solvation = -115.341865 kcal Electronic energy + Delta-G solvation = -13627.631714 eV Core-core repulsion = 11294.417485 eV Total energy + Delta-G solvation = -2333.214229 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.85892 -36.09101 -33.97478 -32.21977 -31.32865 -27.72903 -25.21909 -23.66472 -22.95499 -20.05831 -19.04415 -16.56488 -16.39247 -15.41311 -15.25336 -14.49273 -14.10982 -13.45908 -13.42813 -13.27649 -12.31466 -11.93217 -11.76080 -11.49621 -11.00274 -10.82491 -10.58618 -10.41549 -10.30525 -9.83465 -9.58964 -9.35544 -9.02251 -8.72908 -8.50339 -8.33330 -5.91362 -3.91926 3.33416 3.41878 3.45232 4.37098 4.50476 5.32344 5.37404 5.43793 5.50404 5.63618 5.78297 5.86054 6.02445 6.09761 6.24091 6.34397 6.39219 6.43090 6.58962 6.69116 7.07460 7.09465 7.19347 7.36277 7.71658 7.85442 7.98802 8.45340 8.78084 9.17385 9.69354 11.18366 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.033749 B = 0.012887 C = 0.010172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.452603 B = 2172.196373 C = 2751.920057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.073 3.927 3 Si 0.883 3.117 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.499 4.499 8 H 0.049 0.951 9 C 0.033 3.967 10 H 0.075 0.925 11 C 0.087 3.913 12 O -0.545 6.545 13 C -0.104 4.104 14 H 0.059 0.941 15 C -0.097 4.097 16 C -0.158 4.158 17 C 0.063 3.937 18 O -0.395 6.395 19 C 0.058 3.942 20 H 0.257 0.743 21 H 0.009 0.991 22 H 0.020 0.980 23 H 0.346 0.654 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.965 -6.917 -3.870 8.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.129 4.129 3 Si 0.711 3.289 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.537 4.537 8 H 0.067 0.933 9 C 0.015 3.985 10 H 0.093 0.907 11 C 0.009 3.991 12 O -0.346 6.346 13 C -0.123 4.123 14 H 0.077 0.923 15 C -0.135 4.135 16 C -0.196 4.196 17 C -0.014 4.014 18 O -0.314 6.314 19 C -0.018 4.018 20 H 0.067 0.933 21 H 0.026 0.974 22 H 0.039 0.961 23 H 0.188 0.812 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.758 -6.528 -4.355 8.042 hybrid contribution 0.516 0.830 0.478 1.088 sum 2.274 -5.698 -3.877 7.258 Atomic orbital electron populations 1.69929 1.05870 1.26047 1.50334 1.24879 0.94671 0.98823 0.94544 0.86691 0.80258 0.84451 0.77458 1.19872 1.21142 1.21155 1.20813 0.92664 0.90155 1.50113 0.93257 1.18926 1.00368 0.92778 0.86468 0.90719 1.22519 0.93746 0.92482 0.90394 1.86839 1.81063 1.49169 1.17521 1.21820 0.99435 0.93565 0.97463 0.92303 1.21421 1.01398 0.98484 0.92185 1.22273 1.00648 0.96866 0.99809 1.22483 0.98771 0.93673 0.86441 1.87825 1.83424 1.44906 1.15212 1.22924 0.97239 0.94019 0.87591 0.93264 0.97350 0.96140 0.81155 0.90450 0.92478 0.91800 0.91942 0.93771 0.90071 0.93628 0.89652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.07 12.64 55.43 0.70 -25.37 16 2 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 3 Si 0.88 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.50 -13.67 6.87 -34.44 -0.24 -13.91 16 8 H 0.05 1.36 7.82 -52.49 -0.41 0.95 16 9 C 0.03 0.82 1.93 -91.77 -0.18 0.64 16 10 H 0.07 2.09 6.96 -51.93 -0.36 1.72 16 11 C 0.09 1.91 6.18 37.15 0.23 2.14 16 12 O -0.55 -12.69 13.38 -35.23 -0.47 -13.16 16 13 C -0.10 -2.17 1.96 -90.41 -0.18 -2.35 16 14 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 15 C -0.10 -1.97 5.01 -26.47 -0.13 -2.10 16 16 C -0.16 -2.57 6.13 -26.59 -0.16 -2.74 16 17 C 0.06 0.98 6.84 37.21 0.25 1.23 16 18 O -0.39 -7.12 10.77 -35.23 -0.38 -7.50 16 19 C 0.06 1.09 5.70 37.20 0.21 1.30 16 20 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 21 H 0.01 0.17 6.30 -51.93 -0.33 -0.16 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.35 5.89 9.12 45.56 0.42 6.31 16 24 H 0.08 1.70 7.36 -51.93 -0.38 1.32 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.09 1.49 6.49 -51.93 -0.34 1.16 16 LS Contribution 251.22 15.07 3.79 3.79 Total: -1.00 -30.96 251.22 -5.59 -36.56 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -3.92 Total: 2.83 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -0.29 Total: -13.81 kcal Atomic # 7 Polarization: -26.07 SS G_CDS: 0.70 Total: -25.37 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.85 Total: -20.66 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.96 -5.59 -36.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261332551.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.786 kcal (2) G-P(sol) polarization free energy of solvation -30.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds