Wall clock time and date at job start Mon Mar 30 2020 03:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00083 * 2 1 4 4 C 1.52996 * 109.47048 * 179.97438 * 3 2 1 5 5 H 1.08998 * 110.27187 * 52.90800 * 4 3 2 6 6 C 1.54952 * 110.30709 * 174.99814 * 4 3 2 7 7 C 1.55308 * 100.93825 * 155.46169 * 6 4 3 8 8 C 1.54388 * 102.43740 * 325.76522 * 7 6 4 9 9 C 1.52994 * 109.82990 * 140.97207 * 8 7 6 10 10 C 1.50704 * 109.82842 * 261.94617 * 8 7 6 11 11 H 1.07994 * 119.99822 * 0.02562 * 10 8 7 12 12 C 1.37872 * 119.99531 * 180.02562 * 10 8 7 13 13 N 1.31514 * 120.00271 * 359.97438 * 12 10 8 14 14 Si 1.86805 * 119.99718 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47457 * 59.99692 * 14 12 10 16 16 H 1.48502 * 109.47035 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.46791 * 299.99259 * 14 12 10 18 18 O 1.43640 * 110.39409 * 290.76261 * 4 3 2 19 19 H 1.09002 * 109.47276 * 59.99828 * 1 2 3 20 20 H 1.08995 * 109.47171 * 179.97438 * 1 2 3 21 21 H 1.08998 * 109.47222 * 300.00465 * 1 2 3 22 22 H 1.08997 * 109.47094 * 59.99668 * 3 2 1 23 23 H 1.08999 * 109.46863 * 300.00292 * 3 2 1 24 24 H 1.09000 * 111.12405 * 37.54163 * 6 4 3 25 25 H 1.08999 * 111.12279 * 273.37620 * 6 4 3 26 26 H 1.09002 * 110.84945 * 84.05895 * 7 6 4 27 27 H 1.09001 * 110.84573 * 207.47820 * 7 6 4 28 28 H 1.09011 * 109.47343 * 59.99948 * 9 8 7 29 29 H 1.08996 * 109.47368 * 179.97438 * 9 8 7 30 30 H 1.09001 * 109.47534 * 300.00312 * 9 8 7 31 31 H 0.97004 * 119.99966 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 1 3.8635 0.5399 -0.8147 6 6 4.1859 2.5853 -0.1260 7 6 5.5727 2.3260 0.5233 8 6 5.2371 1.2974 1.6247 9 6 6.3482 0.2493 1.7119 10 6 5.0879 1.9984 2.9504 11 1 5.2168 3.0688 3.0127 12 6 4.7868 1.2730 4.0836 13 7 4.6294 -0.0305 4.0075 14 14 4.6012 2.1419 5.7268 15 1 3.5052 3.1399 5.6380 16 1 4.2787 1.1457 6.7798 17 1 5.8716 2.8306 6.0688 18 8 3.9962 0.6695 1.2599 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.6886 1.8464 0.8899 23 1 1.6886 1.8464 -0.8900 24 1 3.6231 3.3319 0.4343 25 1 4.2899 2.8770 -1.1711 26 1 6.2681 1.9043 -0.2024 27 1 5.9751 3.2414 0.9571 28 1 7.2919 0.7392 1.9522 29 1 6.1057 -0.4733 2.4911 30 1 6.4390 -0.2645 0.7549 31 1 4.4180 -0.5409 4.8048 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306185975.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:05 Heat of formation + Delta-G solvation = -94.957461 kcal Electronic energy + Delta-G solvation = -13643.497265 eV Core-core repulsion = 11311.166969 eV Total energy + Delta-G solvation = -2332.330295 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.49052 -36.92511 -32.96320 -30.87982 -30.45574 -27.52468 -25.55874 -25.09089 -22.50869 -20.32007 -19.25380 -16.80136 -15.97300 -15.50225 -14.86648 -14.58630 -14.32745 -13.48381 -12.84916 -12.50297 -12.20693 -11.92604 -11.39763 -11.18531 -10.91450 -10.80530 -10.66409 -10.48806 -10.41982 -10.11812 -9.82820 -9.42976 -9.24041 -9.01089 -8.41198 -7.76656 -5.86867 -4.03974 3.34714 3.39929 3.41533 4.25460 4.47255 4.97158 5.46339 5.49269 5.57763 5.62191 5.72856 5.84215 5.89198 5.95158 5.99057 6.32984 6.46074 6.49484 6.65433 6.81573 6.92575 7.00616 7.20144 7.43720 7.66517 7.84504 8.18577 8.45042 8.72078 9.13207 9.66753 11.14670 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.030715 B = 0.012881 C = 0.010778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.389207 B = 2173.300383 C = 2597.241068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.380 6.380 3 C 0.068 3.932 4 C 0.078 3.922 5 H 0.052 0.948 6 C -0.142 4.142 7 C -0.142 4.142 8 C 0.226 3.774 9 C -0.140 4.140 10 C -0.533 4.533 11 H 0.057 0.943 12 C 0.081 3.919 13 N -0.858 5.858 14 Si 0.887 3.113 15 H -0.278 1.278 16 H -0.287 1.287 17 H -0.277 1.277 18 O -0.343 6.343 19 H 0.032 0.968 20 H 0.080 0.920 21 H 0.038 0.962 22 H 0.055 0.945 23 H 0.044 0.956 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.035 0.965 29 H 0.090 0.910 30 H 0.011 0.989 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.795 2.957 -7.036 8.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.298 6.298 3 C -0.008 4.008 4 C 0.019 3.981 5 H 0.070 0.930 6 C -0.180 4.180 7 C -0.179 4.179 8 C 0.189 3.811 9 C -0.198 4.198 10 C -0.570 4.570 11 H 0.075 0.925 12 C -0.125 4.125 13 N -0.494 5.494 14 Si 0.714 3.286 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.203 1.203 18 O -0.263 6.263 19 H 0.051 0.949 20 H 0.098 0.902 21 H 0.056 0.944 22 H 0.073 0.927 23 H 0.062 0.938 24 H 0.091 0.909 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.054 0.946 29 H 0.109 0.891 30 H 0.030 0.970 31 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.817 2.456 -6.797 8.173 hybrid contribution -0.318 0.903 0.769 1.228 sum -4.134 3.358 -6.027 8.044 Atomic orbital electron populations 1.22661 0.82394 1.02099 0.99258 1.87983 1.18445 1.28195 1.95197 1.22750 0.94214 0.84445 0.99410 1.22642 0.91050 0.93528 0.90857 0.93005 1.23099 0.97836 0.97435 0.99641 1.23198 0.95290 1.01087 0.98354 1.19767 0.81943 0.87984 0.91441 1.21987 0.97065 1.00792 0.99944 1.21170 1.50679 0.93462 0.91736 0.92498 1.25006 0.94043 0.94730 0.98681 1.69956 1.45436 1.05439 1.28561 0.86778 0.78534 0.79466 0.83806 1.20318 1.21250 1.20264 1.88924 1.40660 1.64074 1.32604 0.94948 0.90174 0.94353 0.92665 0.93784 0.90934 0.92099 0.92997 0.91273 0.94591 0.89101 0.96960 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.38 -7.65 10.70 -35.38 -0.38 -8.03 16 3 C 0.07 1.31 5.65 37.16 0.21 1.52 16 4 C 0.08 1.68 3.72 -25.70 -0.10 1.59 16 5 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 6 C -0.14 -2.69 6.57 -24.48 -0.16 -2.85 16 7 C -0.14 -3.00 6.06 -24.78 -0.15 -3.15 16 8 C 0.23 5.84 0.83 -91.05 -0.08 5.76 16 9 C -0.14 -3.55 8.53 37.15 0.32 -3.24 16 10 C -0.53 -14.92 8.23 -34.44 -0.28 -15.20 16 11 H 0.06 1.55 7.49 -52.49 -0.39 1.16 16 12 C 0.08 2.29 5.26 -17.82 -0.09 2.20 16 13 N -0.86 -25.42 10.93 55.43 0.61 -24.81 16 14 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 O -0.34 -9.27 9.94 -35.38 -0.35 -9.63 16 19 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 20 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 21 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.07 1.37 8.06 -51.93 -0.42 0.95 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.05 1.01 7.85 -51.93 -0.41 0.60 16 27 H 0.07 1.42 7.61 -51.93 -0.40 1.03 16 28 H 0.04 0.84 8.14 -51.92 -0.42 0.42 16 29 H 0.09 2.55 6.01 -51.93 -0.31 2.24 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 256.90 15.07 3.87 3.87 Total: -1.00 -31.39 256.90 -5.36 -36.75 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -4.87 Total: -2.90 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 0.78 Total: -11.77 kcal Atomic # 7 Polarization: -25.42 SS G_CDS: 0.61 Total: -24.81 kcal Atomic # 8 Polarization: -16.92 SS G_CDS: -0.73 Total: -17.66 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.39 -5.36 -36.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306185975.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.207 kcal (2) G-P(sol) polarization free energy of solvation -31.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds