Wall clock time and date at job start Mon Mar 30 2020 03:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42896 * 114.00241 * 2 1 4 4 C 1.52997 * 109.47250 * 179.97438 * 3 2 1 5 5 H 1.09004 * 110.67808 * 307.97014 * 4 3 2 6 6 C 1.54994 * 110.62119 * 185.00131 * 4 3 2 7 7 C 1.54811 * 102.09131 * 204.47869 * 6 4 3 8 8 C 1.54096 * 104.19063 * 20.87694 * 7 6 4 9 9 C 1.53003 * 109.88058 * 242.45832 * 8 7 6 10 10 C 1.50701 * 109.87735 * 121.45452 * 8 7 6 11 11 H 1.07999 * 120.00199 * 5.45610 * 10 8 7 12 12 C 1.37878 * 119.99705 * 185.45438 * 10 8 7 13 13 N 1.31523 * 119.99823 * 199.20198 * 12 10 8 14 14 Si 1.86794 * 120.00214 * 19.19850 * 12 10 8 15 15 H 1.48500 * 109.47119 * 180.02562 * 14 12 10 16 16 H 1.48497 * 109.47358 * 299.99776 * 14 12 10 17 17 H 1.48496 * 109.47141 * 60.00262 * 14 12 10 18 18 O 1.43746 * 107.29162 * 2.03100 * 8 7 6 19 19 H 1.08995 * 109.46761 * 300.00181 * 1 2 3 20 20 H 1.09003 * 109.46698 * 59.99761 * 1 2 3 21 21 H 1.08999 * 109.47387 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47017 * 59.99572 * 3 2 1 23 23 H 1.09002 * 109.47241 * 300.00009 * 3 2 1 24 24 H 1.08992 * 110.90702 * 86.27493 * 6 4 3 25 25 H 1.09007 * 110.93154 * 322.68418 * 6 4 3 26 26 H 1.08999 * 110.48443 * 262.19715 * 7 6 4 27 27 H 1.09003 * 110.48784 * 139.55379 * 7 6 4 28 28 H 1.09000 * 109.46706 * 305.38776 * 9 8 7 29 29 H 1.09002 * 109.46954 * 65.39051 * 9 8 7 30 30 H 1.08997 * 109.47047 * 185.39346 * 9 8 7 31 31 H 0.97000 * 119.99361 * 355.16688 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 1 3.8694 0.5288 0.8049 6 6 4.1938 2.5821 0.1271 7 6 5.5833 2.3452 -0.5130 8 6 5.3884 1.0899 -1.3853 9 6 6.2890 -0.0394 -0.8807 10 6 5.7199 1.4070 -2.8208 11 1 6.1227 2.3747 -3.0809 12 6 5.5091 0.4616 -3.8020 13 7 6.1240 0.5671 -4.9598 14 14 4.3502 -0.9691 -3.4869 15 1 4.2979 -1.8380 -4.6901 16 1 4.8409 -1.7579 -2.3284 17 1 2.9908 -0.4493 -3.1917 18 8 4.0080 0.7040 -1.2762 19 1 -0.3633 0.5138 0.8899 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0276 0.0005 22 1 1.6887 1.8463 0.8899 23 1 1.6888 1.8464 -0.8900 24 1 4.2917 2.8727 1.1730 25 1 3.6306 3.3298 -0.4315 26 1 6.3320 2.1617 0.2577 27 1 5.8698 3.1974 -1.1293 28 1 7.3211 0.3089 -0.8421 29 1 5.9695 -0.3407 0.1169 30 1 6.2179 -0.8907 -1.5576 31 1 6.6706 1.3457 -5.1494 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306185977.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:07 Heat of formation + Delta-G solvation = -120.063738 kcal Electronic energy + Delta-G solvation = -13743.068761 eV Core-core repulsion = 11409.649776 eV Total energy + Delta-G solvation = -2333.418985 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.57317 -38.51294 -35.12984 -32.93789 -32.71149 -29.37368 -27.21426 -26.69173 -24.26470 -22.01748 -21.14118 -19.68595 -17.73142 -17.07985 -16.71379 -16.19670 -15.65006 -15.49722 -14.93765 -14.63209 -14.47636 -13.82397 -13.30991 -13.11002 -12.68915 -12.65153 -12.20305 -12.08648 -12.00543 -11.79285 -11.62950 -11.23532 -11.08810 -10.60684 -10.45470 -10.11748 -8.75936 -6.46242 1.50408 1.58053 1.86933 2.48466 2.84419 2.94366 3.40677 3.91491 4.07993 4.14552 4.28743 4.33549 4.52465 4.56792 4.63574 4.66450 4.74516 4.77791 4.84930 4.87098 4.98127 5.09437 5.16886 5.31365 5.60219 5.96898 6.05423 6.26894 6.37265 6.74208 7.34419 8.60376 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.032447 B = 0.015216 C = 0.011786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.750713 B = 1839.682575 C = 2375.092654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.071 3.929 4 C 0.061 3.939 5 H 0.073 0.927 6 C -0.130 4.130 7 C -0.130 4.130 8 C 0.181 3.819 9 C -0.152 4.152 10 C -0.597 4.597 11 H 0.031 0.969 12 C -0.002 4.002 13 N -0.932 5.932 14 Si 1.109 2.891 15 H -0.309 1.309 16 H -0.261 1.261 17 H -0.276 1.276 18 O -0.396 6.396 19 H 0.063 0.937 20 H 0.039 0.961 21 H 0.095 0.905 22 H 0.094 0.906 23 H 0.044 0.956 24 H 0.109 0.891 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.037 0.963 31 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.788 1.587 13.961 16.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.338 6.338 3 C -0.005 4.005 4 C 0.004 3.996 5 H 0.091 0.909 6 C -0.167 4.167 7 C -0.168 4.168 8 C 0.143 3.857 9 C -0.210 4.210 10 C -0.634 4.634 11 H 0.049 0.951 12 C -0.203 4.203 13 N -0.568 5.568 14 Si 0.937 3.063 15 H -0.238 1.238 16 H -0.186 1.186 17 H -0.202 1.202 18 O -0.318 6.318 19 H 0.081 0.919 20 H 0.058 0.942 21 H 0.113 0.887 22 H 0.112 0.888 23 H 0.062 0.938 24 H 0.127 0.873 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.364 -0.052 13.158 16.150 hybrid contribution 0.866 1.988 0.056 2.170 sum -8.498 1.936 13.214 15.830 Atomic orbital electron populations 1.22937 0.79550 1.03785 1.00837 1.87903 1.21578 1.28740 1.95564 1.22655 0.91674 0.84765 1.01404 1.23295 0.93312 0.95134 0.87898 0.90918 1.22983 0.95163 0.96094 1.02478 1.22833 0.97962 0.97768 0.98262 1.20159 0.79519 0.91674 0.94317 1.22372 0.99818 0.99265 0.99530 1.22215 1.46032 1.01489 0.93688 0.95065 1.26959 0.96276 1.04095 0.92939 1.71025 1.29355 1.29106 1.27351 0.83093 0.75965 0.73179 0.74109 1.23832 1.18623 1.20210 1.88856 1.27931 1.79139 1.35831 0.91884 0.94203 0.88675 0.88795 0.93757 0.87257 0.91018 0.90150 0.92890 0.92375 0.92527 0.94407 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 11.01 113.37 1.25 1.82 16 2 O -0.42 -14.00 10.70 -148.98 -1.59 -15.59 16 3 C 0.07 2.18 5.68 71.98 0.41 2.59 16 4 C 0.06 2.17 3.54 31.28 0.11 2.28 16 5 H 0.07 2.43 8.05 -2.38 -0.02 2.41 16 6 C -0.13 -4.00 6.59 31.89 0.21 -3.79 16 7 C -0.13 -5.03 6.26 31.58 0.20 -4.83 16 8 C 0.18 8.72 0.69 -11.17 -0.01 8.72 16 9 C -0.15 -6.78 8.30 71.98 0.60 -6.18 16 10 C -0.60 -35.20 8.63 25.60 0.22 -34.98 16 11 H 0.03 1.97 7.60 -2.91 -0.02 1.95 16 12 C 0.00 -0.15 5.27 84.65 0.45 0.30 16 13 N -0.93 -60.62 13.70 21.45 0.29 -60.32 16 14 Si 1.11 59.11 24.82 68.60 1.70 60.81 16 15 H -0.31 -16.41 7.11 99.48 0.71 -15.70 16 16 H -0.26 -12.97 5.78 99.48 0.57 -12.40 16 17 H -0.28 -14.65 6.92 99.48 0.69 -13.97 16 18 O -0.40 -18.91 7.00 -148.98 -1.04 -19.95 16 19 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 20 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 21 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 22 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 23 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.11 2.44 8.14 -2.39 -0.02 2.43 16 25 H 0.07 2.20 8.06 -2.38 -0.02 2.18 16 26 H 0.08 2.66 7.70 -2.39 -0.02 2.65 16 27 H 0.05 2.18 7.41 -2.39 -0.02 2.17 16 28 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.06 2.15 8.01 -2.39 -0.02 2.13 16 30 H 0.04 1.82 4.91 -2.39 -0.01 1.81 16 31 H 0.26 16.53 8.73 -92.71 -0.81 15.72 16 Total: -1.00 -71.71 249.44 3.69 -68.02 By element: Atomic # 1 Polarization: 0.21 SS G_CDS: 0.90 Total: 1.11 kcal Atomic # 6 Polarization: -37.50 SS G_CDS: 3.43 Total: -34.07 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: 0.29 Total: -60.32 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -2.64 Total: -35.55 kcal Atomic # 14 Polarization: 59.11 SS G_CDS: 1.70 Total: 60.81 kcal Total: -71.71 3.69 -68.02 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306185977.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.044 kcal (2) G-P(sol) polarization free energy of solvation -71.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds