Wall clock time and date at job start Mon Mar 30 2020 03:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.53009 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.08995 * 110.26821 * 307.09049 * 4 3 2 6 6 C 1.54946 * 110.30861 * 184.99959 * 4 3 2 7 7 C 1.55306 * 100.94079 * 204.63714 * 6 4 3 8 8 C 1.54388 * 102.24864 * 34.13410 * 7 6 4 9 9 C 1.53002 * 109.82952 * 98.24889 * 8 7 6 10 10 C 1.50703 * 109.82797 * 219.12525 * 8 7 6 11 11 H 1.07995 * 120.00284 * 0.02562 * 10 8 7 12 12 C 1.37883 * 119.99736 * 179.97438 * 10 8 7 13 13 N 1.31513 * 119.99660 * 180.02562 * 12 10 8 14 14 Si 1.86803 * 119.99840 * 0.02562 * 12 10 8 15 15 H 1.48498 * 109.47300 * 89.99867 * 14 12 10 16 16 H 1.48503 * 109.46513 * 209.99481 * 14 12 10 17 17 H 1.48496 * 109.47405 * 329.99631 * 14 12 10 18 18 O 1.43234 * 107.59182 * 338.64570 * 8 7 6 19 19 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 20 20 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 21 21 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47484 * 299.99646 * 3 2 1 23 23 H 1.09004 * 109.47459 * 59.99983 * 3 2 1 24 24 H 1.09001 * 111.12488 * 322.55529 * 6 4 3 25 25 H 1.08997 * 111.12290 * 86.72168 * 6 4 3 26 26 H 1.09002 * 110.84668 * 152.32080 * 7 6 4 27 27 H 1.08996 * 110.84858 * 275.74723 * 7 6 4 28 28 H 1.08996 * 109.47533 * 59.99364 * 9 8 7 29 29 H 1.08999 * 109.47179 * 180.02562 * 9 8 7 30 30 H 1.09007 * 109.47006 * 299.99865 * 9 8 7 31 31 H 0.97004 * 119.99365 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 1 3.8636 0.5401 0.8147 6 6 4.1859 2.5854 0.1260 7 6 5.5717 2.3269 -0.5257 8 6 5.2301 1.2972 -1.6241 9 6 5.0785 2.0064 -2.9713 10 6 6.3219 0.2620 -1.7117 11 1 7.1771 0.3223 -1.0550 12 6 6.2283 -0.7627 -2.6295 13 7 7.1808 -1.6663 -2.7055 14 14 4.7486 -0.8673 -3.7649 15 1 5.0263 -0.1093 -5.0112 16 1 4.4811 -2.2892 -4.0995 17 1 3.5620 -0.2868 -3.0865 18 8 3.9943 0.6707 -1.2610 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.6886 1.8464 -0.8900 23 1 1.6885 1.8464 0.8900 24 1 3.6221 3.3323 -0.4330 25 1 4.2914 2.8764 1.1711 26 1 5.9716 3.2420 -0.9626 27 1 6.2693 1.9081 0.1995 28 1 6.0124 2.5076 -3.2254 29 1 4.8370 1.2745 -3.7421 30 1 4.2772 2.7426 -2.9062 31 1 7.1151 -2.3870 -3.3515 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306185978.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:13 Heat of formation + Delta-G solvation = -85.858657 kcal Electronic energy + Delta-G solvation = -13720.669126 eV Core-core repulsion = 11388.733385 eV Total energy + Delta-G solvation = -2331.935742 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.90277 -37.18706 -32.96460 -31.27676 -31.01395 -27.98822 -25.86173 -25.03855 -22.81788 -20.67512 -19.38319 -16.53827 -16.41659 -15.84217 -15.24580 -15.11114 -14.30373 -13.70989 -12.94030 -12.61580 -12.56143 -12.06386 -11.96053 -11.85990 -11.35979 -11.04679 -10.99216 -10.44515 -10.30362 -9.97829 -9.90259 -9.52755 -9.40539 -8.86185 -8.46265 -8.09026 -6.01844 -4.09254 3.43515 3.55191 3.80507 4.04827 4.62290 4.73147 5.27351 5.32475 5.42312 5.44205 5.53414 5.60792 5.68379 5.74576 5.79566 6.06088 6.15387 6.22376 6.33877 6.49232 6.56103 6.68274 6.78600 6.84989 7.35261 7.46573 7.77021 8.36759 8.56691 8.98445 9.64503 11.09112 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.032536 B = 0.014503 C = 0.011702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.385013 B = 1930.176463 C = 2392.225757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.379 6.379 3 C 0.066 3.934 4 C 0.078 3.922 5 H 0.067 0.933 6 C -0.150 4.150 7 C -0.127 4.127 8 C 0.188 3.812 9 C -0.146 4.146 10 C -0.524 4.524 11 H 0.075 0.925 12 C 0.084 3.916 13 N -0.896 5.896 14 Si 0.881 3.119 15 H -0.290 1.290 16 H -0.303 1.303 17 H -0.222 1.222 18 O -0.362 6.362 19 H 0.037 0.963 20 H 0.035 0.965 21 H 0.082 0.918 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.046 0.954 30 H 0.032 0.968 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.520 8.010 4.454 13.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C -0.011 4.011 4 C 0.020 3.980 5 H 0.085 0.915 6 C -0.188 4.188 7 C -0.164 4.164 8 C 0.151 3.849 9 C -0.203 4.203 10 C -0.561 4.561 11 H 0.094 0.906 12 C -0.120 4.120 13 N -0.533 5.533 14 Si 0.712 3.288 15 H -0.218 1.218 16 H -0.231 1.231 17 H -0.145 1.145 18 O -0.283 6.283 19 H 0.055 0.945 20 H 0.053 0.947 21 H 0.100 0.900 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.446 7.544 4.257 13.570 hybrid contribution -0.761 0.182 -0.552 0.957 sum -11.206 7.726 3.704 14.106 Atomic orbital electron populations 1.22696 0.82188 1.02358 0.99306 1.88022 1.18597 1.27922 1.95191 1.22800 0.94223 0.84647 0.99450 1.22731 0.90567 0.93716 0.90993 0.91490 1.23196 0.97912 0.96904 1.00792 1.23008 0.95501 0.99223 0.98717 1.20103 0.83354 0.91147 0.90312 1.22286 0.99891 0.99036 0.99074 1.21150 1.04487 1.09894 1.20558 0.90648 1.25018 0.95595 0.94588 0.96759 1.69932 1.33329 1.14099 1.35950 0.86993 0.86178 0.75758 0.79889 1.21826 1.23134 1.14548 1.88865 1.40730 1.64562 1.34114 0.94461 0.94669 0.89966 0.93232 0.93236 0.91436 0.91181 0.91653 0.90866 0.92143 0.93569 0.94939 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.53 16 2 O -0.38 -7.01 10.70 -35.40 -0.38 -7.39 16 3 C 0.07 1.10 5.64 37.16 0.21 1.31 16 4 C 0.08 1.55 3.73 -25.70 -0.10 1.45 16 5 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 6 C -0.15 -2.49 6.57 -24.48 -0.16 -2.65 16 7 C -0.13 -2.50 6.07 -24.78 -0.15 -2.65 16 8 C 0.19 4.55 0.78 -91.04 -0.07 4.48 16 9 C -0.15 -3.26 8.22 37.16 0.31 -2.96 16 10 C -0.52 -15.18 8.83 -34.44 -0.30 -15.48 16 11 H 0.08 2.32 7.77 -52.49 -0.41 1.92 16 12 C 0.08 2.54 5.45 -17.82 -0.10 2.44 16 13 N -0.90 -28.33 13.96 55.43 0.77 -27.56 16 14 Si 0.88 23.53 23.91 -169.99 -4.06 19.46 16 15 H -0.29 -7.47 6.87 56.52 0.39 -7.08 16 16 H -0.30 -8.19 7.11 56.52 0.40 -7.79 16 17 H -0.22 -5.88 5.38 56.52 0.30 -5.58 16 18 O -0.36 -8.93 7.42 -35.40 -0.26 -9.20 16 19 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 20 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 21 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 25 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.06 1.15 7.82 -51.93 -0.41 0.75 16 27 H 0.07 1.48 7.66 -51.93 -0.40 1.09 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.05 1.11 3.18 -51.93 -0.17 0.94 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 247.72 15.07 3.73 3.73 Total: -1.00 -33.10 247.72 -4.30 -37.40 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -4.85 Total: -3.93 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 0.75 Total: -12.53 kcal Atomic # 7 Polarization: -28.33 SS G_CDS: 0.77 Total: -27.56 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -0.64 Total: -16.58 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -4.06 Total: 19.46 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -33.10 -4.30 -37.40 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306185978.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.457 kcal (2) G-P(sol) polarization free energy of solvation -33.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds