Wall clock time and date at job start Mon Mar 30 2020 03:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99629 * 2 1 4 4 C 1.53009 * 109.47113 * 180.02562 * 3 2 1 5 5 H 1.08995 * 110.26821 * 307.09049 * 4 3 2 6 6 C 1.54946 * 110.30861 * 184.99959 * 4 3 2 7 7 C 1.55306 * 100.94079 * 204.63714 * 6 4 3 8 8 C 1.54388 * 102.24864 * 34.13410 * 7 6 4 9 9 C 1.53002 * 109.82952 * 98.24889 * 8 7 6 10 10 C 1.50703 * 109.82797 * 219.12525 * 8 7 6 11 11 H 1.07995 * 120.00284 * 0.02562 * 10 8 7 12 12 C 1.37883 * 119.99736 * 179.97438 * 10 8 7 13 13 N 1.31513 * 119.99660 * 180.02562 * 12 10 8 14 14 Si 1.86803 * 119.99840 * 0.02562 * 12 10 8 15 15 H 1.48498 * 109.47300 * 89.99867 * 14 12 10 16 16 H 1.48503 * 109.46513 * 209.99481 * 14 12 10 17 17 H 1.48496 * 109.47405 * 329.99631 * 14 12 10 18 18 O 1.43234 * 107.59182 * 338.64570 * 8 7 6 19 19 H 1.09002 * 109.47382 * 59.99956 * 1 2 3 20 20 H 1.09001 * 109.46938 * 299.99942 * 1 2 3 21 21 H 1.09004 * 109.46926 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47484 * 299.99646 * 3 2 1 23 23 H 1.09004 * 109.47459 * 59.99983 * 3 2 1 24 24 H 1.09001 * 111.12488 * 322.55529 * 6 4 3 25 25 H 1.08997 * 111.12290 * 86.72168 * 6 4 3 26 26 H 1.09002 * 110.84668 * 152.32080 * 7 6 4 27 27 H 1.08996 * 110.84858 * 275.74723 * 7 6 4 28 28 H 1.08996 * 109.47533 * 59.99364 * 9 8 7 29 29 H 1.08999 * 109.47179 * 180.02562 * 9 8 7 30 30 H 1.09007 * 109.47006 * 299.99865 * 9 8 7 31 31 H 0.97004 * 119.99365 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 1 3.8636 0.5401 0.8147 6 6 4.1859 2.5854 0.1260 7 6 5.5717 2.3269 -0.5257 8 6 5.2301 1.2972 -1.6241 9 6 5.0785 2.0064 -2.9713 10 6 6.3219 0.2620 -1.7117 11 1 7.1771 0.3223 -1.0550 12 6 6.2283 -0.7627 -2.6295 13 7 7.1808 -1.6663 -2.7055 14 14 4.7486 -0.8673 -3.7649 15 1 5.0263 -0.1093 -5.0112 16 1 4.4811 -2.2892 -4.0995 17 1 3.5620 -0.2868 -3.0865 18 8 3.9943 0.6707 -1.2610 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.6886 1.8464 -0.8900 23 1 1.6885 1.8464 0.8900 24 1 3.6221 3.3323 -0.4330 25 1 4.2914 2.8764 1.1711 26 1 5.9716 3.2420 -0.9626 27 1 6.2693 1.9081 0.1995 28 1 6.0124 2.5076 -3.2254 29 1 4.8370 1.2745 -3.7421 30 1 4.2772 2.7426 -2.9062 31 1 7.1151 -2.3870 -3.3515 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306185978.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:12 Heat of formation + Delta-G solvation = -110.603542 kcal Electronic energy + Delta-G solvation = -13721.742145 eV Core-core repulsion = 11388.733385 eV Total energy + Delta-G solvation = -2333.008760 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.52491 -38.49254 -35.01164 -33.00944 -32.76849 -29.37748 -27.27773 -26.90792 -24.32060 -22.14929 -21.22096 -18.65761 -17.89287 -17.13477 -16.86750 -16.52552 -15.93652 -15.36998 -14.67421 -14.52414 -14.23521 -13.83195 -13.35490 -13.23976 -12.96554 -12.73453 -12.25065 -12.20107 -11.97243 -11.89372 -11.60958 -11.28760 -10.82428 -10.71567 -10.55285 -9.95157 -8.33425 -6.42824 1.30147 1.40474 1.68218 2.41827 2.88160 2.95978 3.40008 3.86850 4.08678 4.22391 4.31353 4.37375 4.50730 4.56550 4.57042 4.66282 4.75515 4.79603 4.83853 4.91844 5.01654 5.09153 5.22425 5.31550 5.63241 5.68301 6.19877 6.32634 6.58385 6.82263 7.35340 8.81542 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.032536 B = 0.014503 C = 0.011702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.385013 B = 1930.176463 C = 2392.225757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.423 6.423 3 C 0.070 3.930 4 C 0.061 3.939 5 H 0.046 0.954 6 C -0.130 4.130 7 C -0.128 4.128 8 C 0.178 3.822 9 C -0.144 4.144 10 C -0.527 4.527 11 H 0.037 0.963 12 C 0.027 3.973 13 N -0.945 5.945 14 Si 0.943 3.057 15 H -0.275 1.275 16 H -0.313 1.313 17 H -0.217 1.217 18 O -0.392 6.392 19 H 0.046 0.954 20 H 0.060 0.940 21 H 0.089 0.911 22 H 0.056 0.944 23 H 0.088 0.912 24 H 0.095 0.905 25 H 0.102 0.898 26 H 0.090 0.910 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.027 0.973 30 H 0.068 0.932 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.925 10.388 4.746 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.342 6.342 3 C -0.006 4.006 4 C 0.003 3.997 5 H 0.064 0.936 6 C -0.167 4.167 7 C -0.166 4.166 8 C 0.140 3.860 9 C -0.201 4.201 10 C -0.565 4.565 11 H 0.055 0.945 12 C -0.172 4.172 13 N -0.585 5.585 14 Si 0.772 3.228 15 H -0.202 1.202 16 H -0.243 1.243 17 H -0.140 1.140 18 O -0.313 6.313 19 H 0.064 0.936 20 H 0.079 0.921 21 H 0.107 0.893 22 H 0.074 0.926 23 H 0.106 0.894 24 H 0.114 0.886 25 H 0.121 0.879 26 H 0.108 0.892 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.046 0.954 30 H 0.087 0.913 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.864 9.950 4.560 16.890 hybrid contribution 0.008 -0.564 -0.516 0.765 sum -12.855 9.386 4.043 16.423 Atomic orbital electron populations 1.22921 0.79646 1.03527 1.00969 1.87959 1.21522 1.29202 1.95566 1.22799 0.91744 0.84529 1.01565 1.23065 0.93171 0.95153 0.88312 0.93630 1.23151 0.95139 0.95445 1.02964 1.22953 0.97457 0.98787 0.97368 1.20119 0.82045 0.90699 0.93089 1.22221 1.01700 0.99208 0.97003 1.21597 1.05047 1.10980 1.18859 0.94492 1.25845 0.98109 0.94546 0.98687 1.70068 1.35567 1.15358 1.37528 0.86028 0.83127 0.75074 0.78578 1.20153 1.24263 1.13978 1.88754 1.40240 1.65972 1.36351 0.93562 0.92103 0.89254 0.92568 0.89363 0.88622 0.87949 0.89186 0.92724 0.91374 0.95437 0.91299 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.42 -14.71 10.70 -148.82 -1.59 -16.30 16 3 C 0.07 2.10 5.64 71.99 0.41 2.50 16 4 C 0.06 2.26 3.73 31.26 0.12 2.38 16 5 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 6 C -0.13 -3.74 6.57 32.05 0.21 -3.53 16 7 C -0.13 -4.76 6.07 31.86 0.19 -4.57 16 8 C 0.18 8.40 0.78 -11.07 -0.01 8.40 16 9 C -0.14 -6.07 8.22 71.98 0.59 -5.48 16 10 C -0.53 -31.32 8.83 25.60 0.23 -31.10 16 11 H 0.04 2.39 7.77 -2.91 -0.02 2.37 16 12 C 0.03 1.64 5.45 84.66 0.46 2.10 16 13 N -0.94 -62.07 13.96 21.45 0.30 -61.77 16 14 Si 0.94 49.52 23.91 68.60 1.64 51.16 16 15 H -0.27 -13.51 6.87 99.48 0.68 -12.83 16 16 H -0.31 -16.73 7.11 99.48 0.71 -16.02 16 17 H -0.22 -11.10 5.38 99.48 0.54 -10.56 16 18 O -0.39 -18.80 7.42 -148.82 -1.10 -19.90 16 19 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 20 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 21 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 22 H 0.06 1.60 8.14 -2.38 -0.02 1.59 16 23 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 24 H 0.10 2.28 8.06 -2.39 -0.02 2.26 16 25 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.09 2.87 7.82 -2.39 -0.02 2.86 16 27 H 0.05 2.19 7.66 -2.39 -0.02 2.17 16 28 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.03 1.24 3.18 -2.39 -0.01 1.24 16 30 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.26 16.35 8.31 -92.70 -0.77 15.58 16 Total: -1.00 -74.19 247.72 3.58 -70.61 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: 0.89 Total: 3.67 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: 3.45 Total: -27.46 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: 0.30 Total: -61.77 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -2.70 Total: -36.20 kcal Atomic # 14 Polarization: 49.52 SS G_CDS: 1.64 Total: 51.16 kcal Total: -74.19 3.58 -70.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306185978.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.992 kcal (2) G-P(sol) polarization free energy of solvation -74.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds