Wall clock time and date at job start Mon Mar 30 2020 02:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31449 * 1 3 3 Si 1.86803 * 119.99839 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00138 * 3 2 1 5 5 H 1.48494 * 109.46800 * 210.00186 * 3 2 1 6 6 H 1.48504 * 109.46913 * 329.99888 * 3 2 1 7 7 C 1.38745 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00332 * 179.97438 * 7 2 1 9 9 O 1.34930 * 120.00077 * 0.02562 * 7 2 1 10 10 C 1.34303 * 117.00103 * 179.97438 * 9 7 2 11 11 O 1.21216 * 120.00306 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00098 * 179.97438 * 10 9 7 13 13 H 1.09005 * 110.43576 * 300.69750 * 12 10 9 14 14 C 1.54890 * 110.48743 * 63.24362 * 12 10 9 15 15 C 1.55030 * 102.68602 * 156.52043 * 14 12 10 16 16 C 1.54267 * 104.27612 * 322.22927 * 15 14 12 17 17 C 1.53875 * 106.59845 * 23.52286 * 16 15 14 18 18 H 1.09007 * 110.06812 * 240.68504 * 17 16 15 19 19 O 1.42900 * 110.03149 * 119.28357 * 17 16 15 20 20 H 0.97001 * 119.99860 * 359.97438 * 1 2 3 21 21 H 1.09004 * 110.75316 * 274.93754 * 14 12 10 22 22 H 1.09004 * 110.75601 * 38.30405 * 14 12 10 23 23 H 1.08998 * 110.51988 * 203.48960 * 15 14 12 24 24 H 1.08995 * 110.36730 * 80.89747 * 15 14 12 25 25 H 1.08995 * 110.03591 * 264.23419 * 16 15 14 26 26 H 1.09002 * 110.06627 * 142.82517 * 16 15 14 27 27 H 0.96700 * 113.99901 * 62.83312 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3145 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 2.4960 2.0465 1.4001 5 1 3.5459 1.4402 -0.7001 6 1 1.4458 2.6527 -0.7001 7 6 2.0083 -1.2015 0.0005 8 1 3.0882 -1.2016 0.0001 9 8 1.3337 -2.3701 0.0005 10 6 2.0652 -3.4964 0.0005 11 8 3.2757 -3.4330 0.0001 12 6 1.3811 -4.8392 0.0011 13 1 0.7440 -4.9414 0.8797 14 6 0.5525 -5.0260 -1.2941 15 6 0.4547 -6.5684 -1.4162 16 6 1.8339 -7.0754 -0.9466 17 6 2.4229 -5.9760 -0.0454 18 1 3.3584 -5.6081 -0.4669 19 8 2.6470 -6.4887 1.2695 20 1 -0.4850 0.8401 0.0004 21 1 -0.4370 -4.5814 -1.1871 22 1 1.0761 -4.6040 -2.1519 23 1 0.2735 -6.8591 -2.4510 24 1 -0.3334 -6.9511 -0.7678 25 1 2.4833 -7.2413 -1.8061 26 1 1.7198 -8.0003 -0.3812 27 1 3.2932 -7.2071 1.3066 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306433722.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:45 Heat of formation + Delta-G solvation = -171.054561 kcal Electronic energy + Delta-G solvation = -12996.437474 eV Core-core repulsion = 10524.974266 eV Total energy + Delta-G solvation = -2471.463208 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.36573 -39.37742 -37.14664 -36.00608 -34.32585 -30.66789 -28.54794 -27.45492 -23.61871 -21.80829 -20.73958 -19.92073 -19.04030 -17.78953 -17.03257 -16.71459 -16.30380 -16.10561 -15.32124 -14.38779 -14.17698 -13.76753 -13.54546 -13.26927 -13.18959 -12.61468 -12.35668 -12.19448 -12.10677 -12.04950 -11.73993 -11.39212 -11.08762 -10.77656 -10.72054 -8.56814 -6.37625 1.27540 1.32103 1.49901 1.60476 2.08636 2.65079 2.93489 3.25065 3.49061 3.77659 3.99949 4.30779 4.39203 4.45184 4.59041 4.68410 4.80391 4.99182 5.03476 5.12403 5.15180 5.28022 5.36979 5.80043 6.60428 6.87423 6.90487 7.72599 8.63998 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.061594 B = 0.008919 C = 0.008232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 454.477269 B = 3138.504233 C = 3400.512548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.003 4.003 3 Si 1.019 2.981 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.257 1.257 7 C -0.427 4.427 8 H 0.079 0.921 9 O -0.240 6.240 10 C 0.401 3.599 11 O -0.584 6.584 12 C -0.075 4.075 13 H 0.107 0.893 14 C -0.109 4.109 15 C -0.109 4.109 16 C -0.143 4.143 17 C 0.112 3.888 18 H 0.054 0.946 19 O -0.580 6.580 20 H 0.280 0.720 21 H 0.079 0.921 22 H 0.061 0.939 23 H 0.095 0.905 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.099 0.901 27 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.698 -11.637 -2.865 12.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.203 4.203 3 Si 0.838 3.162 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.180 1.180 7 C -0.503 4.503 8 H 0.097 0.903 9 O -0.148 6.148 10 C 0.249 3.751 11 O -0.482 6.482 12 C -0.095 4.095 13 H 0.125 0.875 14 C -0.146 4.146 15 C -0.146 4.146 16 C -0.180 4.180 17 C 0.053 3.947 18 H 0.072 0.928 19 O -0.389 6.389 20 H 0.089 0.911 21 H 0.098 0.902 22 H 0.080 0.920 23 H 0.114 0.886 24 H 0.102 0.898 25 H 0.105 0.895 26 H 0.117 0.883 27 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 0.372 -11.026 -2.720 11.363 hybrid contribution 0.889 0.580 0.095 1.066 sum 1.261 -10.446 -2.625 10.845 Atomic orbital electron populations 1.70079 1.07647 1.29476 1.46651 1.26572 0.96933 1.02339 0.94492 0.84612 0.77682 0.74380 0.79557 1.18491 1.18797 1.18043 1.21449 0.92145 0.81349 1.55322 0.90317 1.83906 1.40187 1.14119 1.76570 1.24262 0.86598 0.88306 0.75966 1.90484 1.17226 1.88546 1.51966 1.21753 0.97999 0.86747 1.02970 0.87503 1.22475 0.99453 0.99110 0.93601 1.22344 0.97304 0.91723 1.03263 1.22839 0.97473 0.97922 0.99771 1.22302 0.96609 0.92168 0.83618 0.92802 1.86476 1.66441 1.57187 1.28822 0.91072 0.90194 0.92017 0.88643 0.89796 0.89536 0.88270 0.75329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.44 13.67 21.62 0.30 -54.14 15 2 C 0.00 -0.18 5.49 84.87 0.47 0.29 15 3 Si 1.02 44.50 29.55 68.60 2.03 46.53 15 4 H -0.26 -10.77 7.11 99.48 0.71 -10.07 15 5 H -0.26 -11.27 7.11 99.48 0.71 -10.57 15 6 H -0.26 -10.24 7.11 99.48 0.71 -9.53 15 7 C -0.43 -27.04 9.65 67.94 0.66 -26.38 15 8 H 0.08 5.07 6.86 -2.91 -0.02 5.05 15 9 O -0.24 -14.86 9.74 14.85 0.14 -14.72 15 10 C 0.40 21.66 7.20 71.24 0.51 22.17 15 11 O -0.58 -34.14 14.67 20.76 0.30 -33.84 15 12 C -0.08 -3.02 3.09 -10.47 -0.03 -3.06 15 13 H 0.11 4.26 8.08 -2.38 -0.02 4.24 15 14 C -0.11 -3.55 6.33 31.93 0.20 -3.35 15 15 C -0.11 -2.41 6.83 31.72 0.22 -2.19 15 16 C -0.14 -3.12 6.61 31.32 0.21 -2.91 15 17 C 0.11 3.66 3.63 31.32 0.11 3.78 15 18 H 0.05 2.02 6.87 -2.38 -0.02 2.00 15 19 O -0.58 -18.05 13.22 -148.98 -1.97 -20.02 15 20 H 0.28 15.23 8.31 -92.71 -0.77 14.46 15 21 H 0.08 2.65 8.14 -2.38 -0.02 2.63 15 22 H 0.06 2.14 8.05 -2.39 -0.02 2.12 15 23 H 0.10 1.66 8.14 -2.39 -0.02 1.64 15 24 H 0.08 1.65 8.14 -2.39 -0.02 1.64 15 25 H 0.09 1.63 8.14 -2.39 -0.02 1.61 15 26 H 0.10 1.70 7.95 -2.39 -0.02 1.68 15 27 H 0.40 7.77 9.11 -74.06 -0.67 7.09 15 Total: -1.00 -77.50 238.79 3.65 -73.85 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.50 Total: 13.99 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 2.34 Total: -11.65 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 0.30 Total: -54.14 kcal Atomic # 8 Polarization: -67.05 SS G_CDS: -1.52 Total: -68.57 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -77.50 3.65 -73.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306433722.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.203 kcal (2) G-P(sol) polarization free energy of solvation -77.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds