Wall clock time and date at job start Mon Mar 30 2020 03:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00467 * 2 1 4 4 H 1.48501 * 109.46929 * 270.00074 * 3 2 1 5 5 H 1.48499 * 109.46747 * 29.99551 * 3 2 1 6 6 H 1.48497 * 109.47522 * 149.99789 * 3 2 1 7 7 C 1.37880 * 119.99629 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99777 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00089 * 0.02562 * 7 2 1 10 10 C 1.53878 * 110.03082 * 291.74642 * 9 7 2 11 11 H 1.08997 * 110.03133 * 0.02562 * 10 9 7 12 12 C 1.53001 * 110.02936 * 121.43088 * 10 9 7 13 13 O 1.42894 * 109.47237 * 185.00013 * 12 10 9 14 14 C 1.54265 * 106.60040 * 240.71474 * 10 9 7 15 15 C 1.54891 * 104.19255 * 23.61049 * 14 10 9 16 16 C 1.54271 * 110.03194 * 174.58240 * 9 7 2 17 17 H 1.08993 * 110.48694 * 214.35214 * 16 9 7 18 18 C 1.52997 * 110.48550 * 336.99806 * 16 9 7 19 19 O 1.42900 * 109.47211 * 186.21868 * 18 16 9 20 20 H 0.97002 * 119.99596 * 0.02562 * 1 2 3 21 21 H 1.08996 * 110.05465 * 53.16504 * 9 7 2 22 22 H 1.09004 * 109.47061 * 305.00355 * 12 10 9 23 23 H 1.09000 * 109.47142 * 65.00071 * 12 10 9 24 24 H 0.96697 * 113.99989 * 180.02562 * 13 12 10 25 25 H 1.08996 * 110.48589 * 264.93299 * 14 10 9 26 26 H 1.08996 * 110.59671 * 142.34298 * 14 10 9 27 27 H 1.09003 * 110.75509 * 203.73914 * 15 14 10 28 28 H 1.09008 * 110.91316 * 80.44725 * 15 14 10 29 29 H 1.09007 * 109.47315 * 306.21517 * 18 16 9 30 30 H 1.08999 * 109.47594 * 66.21341 * 18 16 9 31 31 H 0.96701 * 114.00427 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 0.5230 -2.6875 1.3431 11 1 0.7144 -1.8348 1.9944 12 6 -0.9810 -2.8396 1.1069 13 8 -1.6573 -2.8968 2.3644 14 6 1.0913 -3.9745 1.9759 15 6 2.4869 -4.1344 1.3232 16 6 2.2363 -3.6784 -0.1357 17 1 1.7881 -4.4850 -0.7158 18 6 3.5421 -3.2129 -0.7830 19 8 4.3803 -4.3435 -1.0309 20 1 -0.4850 0.8401 -0.0004 21 1 0.5328 -2.5161 -0.8192 22 1 -1.3472 -1.9864 0.5359 23 1 -1.1704 -3.7575 0.5504 24 1 -2.6166 -2.9935 2.2910 25 1 0.4582 -4.8289 1.7367 26 1 1.1859 -3.8614 3.0558 27 1 2.8101 -5.1749 1.3525 28 1 3.2197 -3.4899 1.8089 29 1 3.3219 -2.7104 -1.7249 30 1 4.0534 -2.5215 -0.1133 31 1 5.2277 -4.1225 -1.4411 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306439277.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:52 Heat of formation + Delta-G solvation = -143.187144 kcal Electronic energy + Delta-G solvation = -13646.534839 eV Core-core repulsion = 11312.113148 eV Total energy + Delta-G solvation = -2334.421691 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 200.120 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.97455 -37.63940 -36.56773 -34.39959 -31.46948 -30.20906 -27.13834 -25.20188 -24.06306 -20.92338 -20.40841 -18.70987 -17.93138 -17.49534 -16.48757 -16.04983 -15.95827 -15.23908 -15.05052 -14.35394 -14.05281 -13.58145 -13.06614 -12.87874 -12.78136 -12.60424 -12.27551 -11.63465 -11.58163 -11.51123 -11.19185 -11.09649 -10.79224 -10.61881 -10.40829 -10.29574 -8.06293 -6.14250 1.41968 1.44717 1.52283 2.46076 3.21375 3.53493 3.74715 4.04128 4.10669 4.18269 4.49503 4.66546 4.71426 4.78769 4.92894 5.00309 5.10315 5.12725 5.18651 5.26935 5.37562 5.50168 5.67627 5.75940 5.88692 5.99399 6.44044 6.94442 7.04600 7.05437 7.52560 9.01100 Molecular weight = 200.12amu Principal moments of inertia in cm(-1) A = 0.021750 B = 0.017997 C = 0.010766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.018508 B = 1555.398755 C = 2600.136067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.945 3.055 4 H -0.276 1.276 5 H -0.291 1.291 6 H -0.268 1.268 7 C -0.527 4.527 8 H 0.069 0.931 9 C 0.056 3.944 10 C -0.062 4.062 11 H 0.034 0.966 12 C 0.092 3.908 13 O -0.592 6.592 14 C -0.110 4.110 15 C -0.099 4.099 16 C -0.085 4.085 17 H 0.058 0.942 18 C 0.103 3.897 19 O -0.593 6.593 20 H 0.257 0.743 21 H 0.006 0.994 22 H 0.046 0.954 23 H 0.037 0.963 24 H 0.385 0.615 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.038 0.962 30 H 0.047 0.953 31 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.720 -5.499 0.125 6.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.184 4.184 3 Si 0.771 3.229 4 H -0.202 1.202 5 H -0.218 1.218 6 H -0.193 1.193 7 C -0.565 4.565 8 H 0.087 0.913 9 C 0.037 3.963 10 C -0.082 4.082 11 H 0.053 0.947 12 C 0.015 3.985 13 O -0.399 6.399 14 C -0.148 4.148 15 C -0.137 4.137 16 C -0.104 4.104 17 H 0.076 0.924 18 C 0.026 3.974 19 O -0.401 6.401 20 H 0.066 0.934 21 H 0.024 0.976 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.232 0.768 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.675 -5.620 0.608 6.254 hybrid contribution -0.075 1.517 -0.537 1.611 sum 2.600 -4.102 0.071 4.857 Atomic orbital electron populations 1.70018 1.06988 1.26768 1.51187 1.25684 0.95568 1.01989 0.95174 0.85761 0.78878 0.80210 0.78025 1.20223 1.21751 1.19304 1.21679 0.93628 0.91085 1.50081 0.91271 1.19182 0.92539 0.92359 0.92183 1.21665 0.92250 0.95790 0.98458 0.94707 1.22322 0.93416 0.98539 0.84215 1.86422 1.24548 1.97102 1.31779 1.22353 0.96388 0.97153 0.98858 1.22343 0.96432 1.00125 0.94753 1.21916 0.94882 0.97599 0.95968 0.92352 1.22141 0.90648 0.86435 0.98213 1.86388 1.33380 1.35471 1.84856 0.93420 0.97630 0.93612 0.94507 0.76772 0.91860 0.92805 0.91328 0.92645 0.94376 0.93464 0.76177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.14 11.60 21.45 0.25 -50.89 16 2 C 0.02 0.81 5.23 84.65 0.44 1.25 16 3 Si 0.94 42.75 29.54 68.60 2.03 44.77 16 4 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.53 -27.44 7.49 25.60 0.19 -27.25 16 8 H 0.07 3.46 5.17 -2.91 -0.02 3.45 16 9 C 0.06 2.72 2.31 -10.81 -0.02 2.69 16 10 C -0.06 -2.92 2.25 -10.07 -0.02 -2.95 16 11 H 0.03 1.89 7.54 -2.39 -0.02 1.87 16 12 C 0.09 4.03 6.07 71.98 0.44 4.46 16 13 O -0.59 -23.40 13.51 -148.98 -2.01 -25.41 16 14 C -0.11 -4.35 6.22 31.67 0.20 -4.16 16 15 C -0.10 -3.77 6.27 31.88 0.20 -3.57 16 16 C -0.09 -3.51 3.04 -9.72 -0.03 -3.54 16 17 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 18 C 0.10 3.90 5.20 71.98 0.37 4.27 16 19 O -0.59 -19.33 13.59 -148.98 -2.03 -21.35 16 20 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 21 H 0.01 0.30 7.67 -2.39 -0.02 0.28 16 22 H 0.05 2.24 6.90 -2.38 -0.02 2.23 16 23 H 0.04 1.45 8.00 -2.39 -0.02 1.43 16 24 H 0.38 10.90 9.12 -74.06 -0.68 10.22 16 25 H 0.06 2.32 7.76 -2.39 -0.02 2.30 16 26 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 28 H 0.05 2.16 7.94 -2.38 -0.02 2.14 16 29 H 0.04 1.49 7.98 -2.38 -0.02 1.47 16 30 H 0.05 1.85 6.21 -2.39 -0.01 1.83 16 31 H 0.39 8.58 9.12 -74.06 -0.68 7.90 16 Total: -1.00 -61.58 249.79 -0.21 -61.79 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -0.22 Total: 19.88 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: 1.77 Total: -28.78 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.25 Total: -50.89 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -4.04 Total: -46.77 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -61.58 -0.21 -61.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306439277.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.394 kcal (2) G-P(sol) polarization free energy of solvation -61.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds