Wall clock time and date at job start Mon Mar 30 2020 02:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 119.99934 * 2 1 4 4 H 1.48501 * 109.47055 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47093 * 299.99720 * 3 2 1 6 6 H 1.48499 * 109.47354 * 59.99974 * 3 2 1 7 7 C 1.37882 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00061 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99732 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46908 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00107 * 179.97438 * 10 9 7 12 12 O 1.21593 * 119.99896 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00250 * 180.02562 * 11 10 9 14 14 C 1.47788 * 126.99461 * 180.02562 * 13 11 10 15 15 C 1.54456 * 104.75292 * 205.04285 * 14 13 11 16 16 C 1.54656 * 103.54519 * 358.96074 * 15 14 13 17 17 O 1.43305 * 126.94419 * 359.95915 * 13 11 10 18 18 H 0.97005 * 120.00326 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.47616 * 59.99998 * 9 7 2 20 20 H 1.09004 * 109.47336 * 299.99797 * 9 7 2 21 21 H 0.97002 * 120.00226 * 0.02562 * 10 9 7 22 22 H 1.08992 * 110.38323 * 86.22471 * 14 13 11 23 23 H 1.08997 * 110.37949 * 323.86244 * 14 13 11 24 24 H 1.08996 * 110.60674 * 240.44290 * 15 14 13 25 25 H 1.09001 * 110.74134 * 117.53783 * 15 14 13 26 26 H 1.09002 * 110.59882 * 95.77108 * 16 15 14 27 27 H 1.08999 * 110.59607 * 218.56045 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8903 2.3963 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5583 -5.1055 0.0011 13 7 2.6295 -5.9078 0.0016 14 6 2.3102 -7.3508 0.0017 15 6 3.5462 -8.0271 0.6345 16 6 4.5000 -6.8437 0.9204 17 8 4.0598 -5.8182 0.0008 18 1 -0.4851 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8896 20 1 0.6239 -2.5567 0.8903 21 1 3.1567 -3.4355 0.0009 22 1 2.1629 -7.7070 -1.0178 23 1 1.4223 -7.5430 0.6039 24 1 4.0018 -8.7265 -0.0664 25 1 3.2766 -8.5348 1.5606 26 1 4.3939 -6.5060 1.9513 27 1 5.5327 -7.1253 0.7147 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306528489.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:50 Heat of formation + Delta-G solvation = -19.745858 kcal Electronic energy + Delta-G solvation = -12728.713209 eV Core-core repulsion = 10296.103990 eV Total energy + Delta-G solvation = -2432.609219 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.58313 -37.88018 -34.21807 -32.45109 -32.18340 -31.23265 -27.27554 -25.08352 -22.59250 -21.65243 -20.10598 -18.35993 -16.52761 -16.12743 -16.01716 -15.10542 -14.49323 -14.24864 -13.97437 -13.40887 -12.85297 -12.43305 -12.05811 -11.90432 -11.78488 -11.46202 -10.90400 -10.88191 -10.50975 -10.27935 -9.59025 -9.32578 -8.74860 -8.55632 -7.73643 -6.12553 -4.18555 2.29180 3.27137 3.33969 3.37963 3.73786 3.91452 4.36636 4.52840 4.68481 4.82411 5.13372 5.23729 5.34915 5.49584 5.61296 5.71782 5.85443 6.50349 7.11358 7.49350 7.55962 7.57372 7.85017 8.03459 8.77060 8.87919 9.24730 9.48479 10.97860 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.066636 B = 0.007492 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.094734 B = 3736.248216 C = 4095.525319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.540 4.540 8 H 0.064 0.936 9 C 0.264 3.736 10 N -0.717 5.717 11 C 0.728 3.272 12 O -0.581 6.581 13 N -0.514 5.514 14 C 0.120 3.880 15 C -0.157 4.157 16 C 0.028 3.972 17 O -0.162 6.162 18 H 0.265 0.735 19 H 0.027 0.973 20 H 0.027 0.973 21 H 0.394 0.606 22 H 0.072 0.928 23 H 0.089 0.911 24 H 0.085 0.915 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.874 -13.293 1.706 16.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.578 4.578 8 H 0.082 0.918 9 C 0.143 3.857 10 N -0.368 5.368 11 C 0.431 3.569 12 O -0.460 6.460 13 N -0.304 5.304 14 C -0.002 4.002 15 C -0.196 4.196 16 C -0.050 4.050 17 O -0.163 6.163 18 H 0.075 0.925 19 H 0.045 0.955 20 H 0.045 0.955 21 H 0.227 0.773 22 H 0.091 0.909 23 H 0.107 0.893 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.086 0.914 27 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 7.863 -12.999 1.572 15.273 hybrid contribution 1.061 0.810 0.133 1.341 sum 8.923 -12.189 1.705 15.202 Atomic orbital electron populations 1.69988 1.06084 1.27159 1.49163 1.24942 0.94924 0.99404 0.94761 0.86336 0.79862 0.82872 0.77696 1.19620 1.20798 1.20825 1.21263 0.93412 0.90287 1.52862 0.91784 1.19086 0.87791 0.81062 0.97775 1.45734 1.11571 1.03768 1.75762 1.15511 0.82908 0.80021 0.78436 1.90943 1.11789 1.82691 1.60545 1.50484 0.92556 1.05606 1.81706 1.22251 0.97976 0.78394 1.01581 1.23298 0.95597 0.98488 1.02219 1.23809 0.98742 0.87813 0.94663 1.91383 1.03765 1.57587 1.63595 0.92522 0.95483 0.95525 0.77269 0.90931 0.89308 0.89635 0.89514 0.91356 0.87510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.29 55.43 0.74 -25.81 15 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 15 3 Si 0.91 21.32 29.54 -169.99 -5.02 16.29 15 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 7 C -0.54 -15.21 9.28 -34.44 -0.32 -15.53 15 8 H 0.06 1.71 7.60 -52.49 -0.40 1.32 15 9 C 0.26 7.33 5.43 -5.19 -0.03 7.31 15 10 N -0.72 -16.96 5.55 -66.41 -0.37 -17.32 15 11 C 0.73 16.57 8.66 -86.92 -0.75 15.82 15 12 O -0.58 -15.02 16.71 5.28 0.09 -14.94 15 13 N -0.51 -9.25 3.88 -63.55 -0.25 -9.49 15 14 C 0.12 1.60 7.27 -2.57 -0.02 1.58 15 15 C -0.16 -1.42 7.13 -25.10 -0.18 -1.60 15 16 C 0.03 0.30 7.92 38.03 0.30 0.60 15 17 O -0.16 -2.54 11.96 -12.32 -0.15 -2.69 15 18 H 0.27 7.40 8.31 -40.82 -0.34 7.06 15 19 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 20 H 0.03 0.80 8.14 -51.93 -0.42 0.38 15 21 H 0.39 8.55 7.90 -40.82 -0.32 8.22 15 22 H 0.07 0.89 8.14 -51.93 -0.42 0.47 15 23 H 0.09 1.18 8.09 -51.93 -0.42 0.76 15 24 H 0.08 0.60 8.14 -51.93 -0.42 0.18 15 25 H 0.09 0.62 8.14 -51.93 -0.42 0.20 15 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 27 H 0.11 0.81 8.14 -51.93 -0.42 0.39 15 LS Contribution 242.27 15.07 3.65 3.65 Total: -1.00 -33.29 242.27 -5.64 -38.93 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -3.24 Total: 1.50 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: -1.09 Total: 9.87 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: 0.12 Total: -52.62 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.06 Total: -17.63 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -33.29 -5.64 -38.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306528489.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.186 kcal (2) G-P(sol) polarization free energy of solvation -33.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds