Wall clock time and date at job start Mon Mar 30 2020 02:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 119.99934 * 2 1 4 4 H 1.48501 * 109.47055 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47093 * 299.99720 * 3 2 1 6 6 H 1.48499 * 109.47354 * 59.99974 * 3 2 1 7 7 C 1.37882 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00061 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99732 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.46908 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00107 * 179.97438 * 10 9 7 12 12 O 1.21593 * 119.99896 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00250 * 180.02562 * 11 10 9 14 14 C 1.47788 * 126.99461 * 180.02562 * 13 11 10 15 15 C 1.54456 * 104.75292 * 205.04285 * 14 13 11 16 16 C 1.54656 * 103.54519 * 358.96074 * 15 14 13 17 17 O 1.43305 * 126.94419 * 359.95915 * 13 11 10 18 18 H 0.97005 * 120.00326 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.47616 * 59.99998 * 9 7 2 20 20 H 1.09004 * 109.47336 * 299.99797 * 9 7 2 21 21 H 0.97002 * 120.00226 * 0.02562 * 10 9 7 22 22 H 1.08992 * 110.38323 * 86.22471 * 14 13 11 23 23 H 1.08997 * 110.37949 * 323.86244 * 14 13 11 24 24 H 1.08996 * 110.60674 * 240.44290 * 15 14 13 25 25 H 1.09001 * 110.74134 * 117.53783 * 15 14 13 26 26 H 1.09002 * 110.59882 * 95.77108 * 16 15 14 27 27 H 1.08999 * 110.59607 * 218.56045 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8903 2.3963 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7537 -4.8833 0.0011 12 8 0.5583 -5.1055 0.0011 13 7 2.6295 -5.9078 0.0016 14 6 2.3102 -7.3508 0.0017 15 6 3.5462 -8.0271 0.6345 16 6 4.5000 -6.8437 0.9204 17 8 4.0598 -5.8182 0.0008 18 1 -0.4851 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8896 20 1 0.6239 -2.5567 0.8903 21 1 3.1567 -3.4355 0.0009 22 1 2.1629 -7.7070 -1.0178 23 1 1.4223 -7.5430 0.6039 24 1 4.0018 -8.7265 -0.0664 25 1 3.2766 -8.5348 1.5606 26 1 4.3939 -6.5060 1.9513 27 1 5.5327 -7.1253 0.7147 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306528489.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:50 Heat of formation + Delta-G solvation = -45.166359 kcal Electronic energy + Delta-G solvation = -12729.815524 eV Core-core repulsion = 10296.103990 eV Total energy + Delta-G solvation = -2433.711535 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.095 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.09830 -39.35057 -36.24989 -34.43811 -33.44530 -32.54086 -29.27213 -26.43688 -24.47153 -22.73046 -21.79471 -20.10846 -18.15567 -17.70681 -17.41402 -16.79544 -16.23463 -15.86516 -15.38663 -14.96413 -14.15958 -14.12393 -14.05365 -13.29389 -12.96630 -12.89320 -12.74712 -12.37813 -12.24097 -11.58248 -11.46066 -11.28301 -10.83900 -10.24613 -9.56527 -8.29722 -6.46262 0.91302 1.43505 1.44993 1.58878 1.98754 2.33339 2.55138 3.04973 3.56195 3.63590 3.96909 4.14901 4.45996 4.66385 4.70515 4.94313 4.97370 5.06672 5.22563 5.33275 5.43801 5.62729 5.80151 6.03407 6.63552 7.01913 7.22345 7.48892 8.82924 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.066636 B = 0.007492 C = 0.006835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 420.094734 B = 3736.248216 C = 4095.525319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.988 3.012 4 H -0.256 1.256 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.557 4.557 8 H 0.079 0.921 9 C 0.282 3.718 10 N -0.717 5.717 11 C 0.724 3.276 12 O -0.623 6.623 13 N -0.515 5.515 14 C 0.106 3.894 15 C -0.140 4.140 16 C 0.018 3.982 17 O -0.176 6.176 18 H 0.270 0.730 19 H -0.009 1.009 20 H -0.008 1.008 21 H 0.404 0.596 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.115 0.885 25 H 0.110 0.890 26 H 0.068 0.932 27 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.415 -13.884 1.961 18.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.811 3.189 4 H -0.180 1.180 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.595 4.595 8 H 0.097 0.903 9 C 0.160 3.840 10 N -0.369 5.369 11 C 0.427 3.573 12 O -0.506 6.506 13 N -0.301 5.301 14 C -0.015 4.015 15 C -0.178 4.178 16 C -0.060 4.060 17 O -0.178 6.178 18 H 0.079 0.921 19 H 0.009 0.991 20 H 0.010 0.990 21 H 0.239 0.761 22 H 0.100 0.900 23 H 0.101 0.899 24 H 0.134 0.866 25 H 0.128 0.872 26 H 0.086 0.914 27 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 10.467 -13.668 1.832 17.313 hybrid contribution 0.320 0.842 0.071 0.904 sum 10.787 -12.826 1.903 16.866 Atomic orbital electron populations 1.70136 1.08176 1.28637 1.49754 1.26053 0.95841 1.03780 0.93689 0.85063 0.78873 0.77097 0.77868 1.17997 1.20197 1.20135 1.21581 0.94158 0.90491 1.53250 0.90307 1.18550 0.87998 0.83045 0.94438 1.45389 1.11274 1.03642 1.76616 1.15528 0.83123 0.80437 0.78233 1.90897 1.13939 1.83665 1.62057 1.50264 0.94048 1.06119 1.79711 1.22684 1.00146 0.75896 1.02767 1.23313 0.92842 0.97895 1.03750 1.24257 1.00885 0.87006 0.93818 1.91376 1.01471 1.59779 1.65218 0.92077 0.99108 0.98978 0.76077 0.89952 0.89881 0.86621 0.87155 0.91380 0.83611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.86 13.29 21.45 0.28 -56.57 15 2 C 0.01 0.35 5.46 84.66 0.46 0.81 15 3 Si 0.99 43.40 29.54 68.60 2.03 45.42 15 4 H -0.26 -10.54 7.11 99.48 0.71 -9.84 15 5 H -0.28 -11.84 7.11 99.48 0.71 -11.13 15 6 H -0.28 -11.77 7.11 99.48 0.71 -11.07 15 7 C -0.56 -31.80 9.28 25.60 0.24 -31.56 15 8 H 0.08 4.17 7.60 -2.91 -0.02 4.14 15 9 C 0.28 16.46 5.43 85.63 0.46 16.92 15 10 N -0.72 -34.88 5.55 -482.29 -2.68 -37.55 15 11 C 0.72 33.86 8.66 179.05 1.55 35.41 15 12 O -0.62 -33.69 16.71 -4.01 -0.07 -33.75 15 13 N -0.51 -18.23 3.88 -473.22 -1.84 -20.07 15 14 C 0.11 2.63 7.27 86.63 0.63 3.26 15 15 C -0.14 -1.98 7.13 31.65 0.23 -1.75 15 16 C 0.02 0.31 7.92 72.55 0.57 0.88 15 17 O -0.18 -5.21 11.96 -42.71 -0.51 -5.72 15 18 H 0.27 15.31 8.31 -92.70 -0.77 14.54 15 19 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 15 20 H -0.01 -0.50 8.14 -2.38 -0.02 -0.51 15 21 H 0.40 17.67 7.90 -92.71 -0.73 16.94 15 22 H 0.08 1.89 8.14 -2.39 -0.02 1.87 15 23 H 0.08 2.16 8.09 -2.39 -0.02 2.14 15 24 H 0.12 1.02 8.14 -2.39 -0.02 1.00 15 25 H 0.11 1.11 8.14 -2.39 -0.02 1.09 15 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 15 27 H 0.15 1.51 8.14 -2.39 -0.02 1.49 15 Total: -1.00 -74.82 242.27 1.80 -73.01 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.44 Total: 11.27 kcal Atomic # 6 Polarization: 19.83 SS G_CDS: 4.14 Total: 23.97 kcal Atomic # 7 Polarization: -109.97 SS G_CDS: -4.23 Total: -114.20 kcal Atomic # 8 Polarization: -38.90 SS G_CDS: -0.58 Total: -39.48 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -74.82 1.80 -73.01 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306528489.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.848 kcal (2) G-P(sol) polarization free energy of solvation -74.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds