Wall clock time and date at job start Mon Mar 30 2020 02:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.90016 * 2 1 4 4 C 1.54377 * 109.83433 * 120.93948 * 2 1 3 5 5 C 1.55300 * 102.25502 * 140.86609 * 4 2 1 6 6 C 1.54940 * 100.94415 * 325.86750 * 5 4 2 7 7 H 1.08997 * 110.31031 * 277.52940 * 6 5 4 8 8 C 1.50699 * 110.31016 * 155.35699 * 6 5 4 9 9 O 1.21211 * 120.00401 * 247.83526 * 8 6 5 10 10 O 1.34319 * 119.99759 * 67.83619 * 8 6 5 11 11 C 1.34917 * 116.99659 * 180.02562 * 10 8 6 12 12 H 1.07999 * 120.00286 * 359.97438 * 11 10 8 13 13 C 1.38761 * 119.99815 * 180.02562 * 11 10 8 14 14 N 1.31437 * 119.99461 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 119.99776 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47496 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47123 * 120.00085 * 15 13 11 18 18 H 1.48503 * 109.46788 * 239.99513 * 15 13 11 19 19 O 1.43245 * 109.82960 * 239.07072 * 2 1 3 20 20 H 1.09003 * 109.47740 * 179.47743 * 1 2 3 21 21 H 1.09004 * 109.47149 * 299.47446 * 1 2 3 22 22 H 1.09002 * 109.47438 * 59.47324 * 1 2 3 23 23 H 1.09006 * 110.84785 * 259.06340 * 4 2 1 24 24 H 1.09004 * 110.84470 * 22.47061 * 4 2 1 25 25 H 1.09007 * 111.12449 * 83.79023 * 5 4 2 26 26 H 1.09006 * 111.12576 * 207.94720 * 5 4 2 27 27 H 0.97002 * 119.99429 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9009 1.0249 0.0000 4 6 2.0537 -0.7466 1.2456 5 6 3.2729 -1.5222 0.6765 6 6 2.7746 -1.8444 -0.7548 7 1 2.1399 -2.7305 -0.7439 8 6 3.9446 -2.0490 -1.6823 9 8 4.1628 -1.2506 -2.5678 10 8 4.7455 -3.1161 -1.5278 11 6 5.7749 -3.2394 -2.3912 12 1 5.9242 -2.4986 -3.1628 13 6 6.6410 -4.3186 -2.2885 14 7 6.4588 -5.2204 -1.3498 15 14 8.0666 -4.4890 -3.4835 16 1 8.0518 -3.3509 -4.4373 17 1 9.3465 -4.4879 -2.7305 18 1 7.9344 -5.7642 -4.2330 19 8 2.0158 -0.6926 -1.1559 20 1 -0.3635 -1.0276 -0.0094 21 1 -0.3634 0.5057 0.8947 22 1 -0.3634 0.5220 -0.8852 23 1 2.3672 -0.0426 2.0165 24 1 1.2998 -1.4324 1.6323 25 1 4.1620 -0.8921 0.6504 26 1 3.4571 -2.4350 1.2431 27 1 7.0641 -5.9750 -1.2783 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306545745.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:33 Heat of formation + Delta-G solvation = -131.864935 kcal Electronic energy + Delta-G solvation = -12930.011520 eV Core-core repulsion = 10460.247702 eV Total energy + Delta-G solvation = -2469.763818 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.73370 -38.29312 -35.01409 -32.20860 -32.06699 -31.37789 -26.99443 -25.00018 -22.28303 -21.14314 -19.78370 -17.74736 -17.19619 -15.95186 -15.50676 -14.72136 -14.31048 -14.21580 -13.86572 -13.28266 -12.84032 -12.36150 -11.91890 -11.75478 -11.53374 -11.31989 -11.11310 -10.74681 -10.72654 -10.38677 -10.35188 -9.78178 -9.50107 -8.75083 -8.56134 -6.39570 -4.07150 3.11044 3.19782 3.27574 3.47735 3.66350 4.15528 4.55168 4.79543 4.86945 5.14074 5.21731 5.35805 5.38697 5.49296 5.65194 5.81928 5.83011 6.07316 6.14738 6.23122 6.34684 6.66618 7.31408 7.43031 7.97573 8.75007 9.09683 9.87774 10.78634 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.080410 B = 0.008107 C = 0.007650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 348.132073 B = 3452.947764 C = 3659.323658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.072 3.928 3 H 0.078 0.922 4 C -0.150 4.150 5 C -0.139 4.139 6 C 0.101 3.899 7 H 0.096 0.904 8 C 0.397 3.603 9 O -0.538 6.538 10 O -0.213 6.213 11 C -0.381 4.381 12 H 0.096 0.904 13 C 0.042 3.958 14 N -0.867 5.867 15 Si 0.943 3.057 16 H -0.265 1.265 17 H -0.276 1.276 18 H -0.276 1.276 19 O -0.352 6.352 20 H 0.060 0.940 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.096 0.904 27 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.627 5.556 6.101 11.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.014 3.986 3 H 0.096 0.904 4 C -0.188 4.188 5 C -0.177 4.177 6 C 0.042 3.958 7 H 0.113 0.887 8 C 0.242 3.758 9 O -0.434 6.434 10 O -0.121 6.121 11 C -0.457 4.457 12 H 0.114 0.886 13 C -0.162 4.162 14 N -0.504 5.504 15 Si 0.768 3.232 16 H -0.189 1.189 17 H -0.202 1.202 18 H -0.202 1.202 19 O -0.271 6.271 20 H 0.079 0.921 21 H 0.083 0.917 22 H 0.080 0.920 23 H 0.100 0.900 24 H 0.098 0.902 25 H 0.101 0.899 26 H 0.114 0.886 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.499 5.622 5.728 10.984 hybrid contribution 0.691 -0.191 -0.351 0.798 sum -6.808 5.431 5.377 10.235 Atomic orbital electron populations 1.22132 0.94989 1.02581 1.02039 1.22763 0.94139 0.96518 0.85174 0.90363 1.23212 0.97950 0.99734 0.97897 1.23172 0.98437 1.01963 0.94142 1.22114 0.90872 0.90463 0.92311 0.88674 1.22936 0.85106 0.82138 0.85598 1.90568 1.72597 1.45679 1.34507 1.83858 1.35905 1.39850 1.52457 1.21290 1.03175 1.10250 1.11020 0.88645 1.25322 0.98525 0.94629 0.97696 1.70001 1.37284 1.11601 1.31498 0.85610 0.79522 0.78697 0.79409 1.18933 1.20176 1.20160 1.88526 1.69291 1.40041 1.29291 0.92121 0.91682 0.91973 0.89982 0.90193 0.89908 0.88550 0.92162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.44 37.15 0.35 -1.46 15 2 C 0.07 1.02 4.16 -26.01 -0.11 0.91 15 3 H 0.08 1.05 8.14 -51.93 -0.42 0.63 15 4 C -0.15 -1.85 6.55 -24.79 -0.16 -2.02 15 5 C -0.14 -2.27 6.56 -24.49 -0.16 -2.43 15 6 C 0.10 2.03 3.97 -26.86 -0.11 1.92 15 7 H 0.10 1.74 8.14 -51.93 -0.42 1.32 15 8 C 0.40 10.45 7.25 36.01 0.26 10.71 15 9 O -0.54 -15.77 15.79 -25.62 -0.40 -16.18 15 10 O -0.21 -6.23 9.75 -20.71 -0.20 -6.44 15 11 C -0.38 -11.54 9.65 30.93 0.30 -11.25 15 12 H 0.10 2.94 6.86 -52.49 -0.36 2.58 15 13 C 0.04 1.20 5.49 -17.53 -0.10 1.10 15 14 N -0.87 -25.51 13.67 55.48 0.76 -24.75 15 15 Si 0.94 21.59 29.55 -169.99 -5.02 16.57 15 16 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 17 H -0.28 -6.09 7.11 56.52 0.40 -5.68 15 18 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 19 O -0.35 -6.92 10.27 -54.56 -0.56 -7.48 15 20 H 0.06 0.68 8.14 -51.93 -0.42 0.26 15 21 H 0.06 0.57 8.14 -51.93 -0.42 0.15 15 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 15 23 H 0.08 0.84 8.14 -51.93 -0.42 0.41 15 24 H 0.08 0.85 7.85 -51.93 -0.41 0.44 15 25 H 0.08 1.43 8.05 -51.93 -0.42 1.01 15 26 H 0.10 1.47 8.14 -51.93 -0.42 1.05 15 27 H 0.27 7.21 8.31 -40.82 -0.34 6.87 15 LS Contribution 241.46 15.07 3.64 3.64 Total: -1.00 -34.33 241.46 -4.80 -39.13 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -3.28 Total: -1.99 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 0.28 Total: -2.50 kcal Atomic # 7 Polarization: -25.51 SS G_CDS: 0.76 Total: -24.75 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -1.17 Total: -30.10 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -34.33 -4.80 -39.13 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306545745.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.739 kcal (2) G-P(sol) polarization free energy of solvation -34.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds