Wall clock time and date at job start Mon Mar 30 2020 02:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 110.54973 * 2 1 4 4 C 1.54985 * 110.61947 * 237.11788 * 2 1 3 5 5 C 1.54812 * 102.09222 * 204.31783 * 4 2 1 6 6 C 1.54094 * 104.18979 * 20.87884 * 5 4 2 7 7 H 1.08998 * 109.88447 * 242.45866 * 6 5 4 8 8 C 1.50700 * 109.88018 * 121.45010 * 6 5 4 9 9 O 1.21206 * 120.00651 * 245.00041 * 8 6 5 10 10 O 1.34317 * 119.99622 * 65.00671 * 8 6 5 11 11 C 1.34916 * 117.00012 * 180.02562 * 10 8 6 12 12 H 1.08002 * 120.00267 * 0.02562 * 11 10 8 13 13 C 1.38754 * 120.00273 * 179.97438 * 11 10 8 14 14 N 1.31444 * 119.99860 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00492 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47339 * 180.02562 * 15 13 11 17 17 H 1.48493 * 109.47239 * 300.00557 * 15 13 11 18 18 H 1.48504 * 109.46636 * 60.00116 * 15 13 11 19 19 O 1.43753 * 107.29170 * 2.03273 * 6 5 4 20 20 H 1.09001 * 109.47230 * 182.88223 * 1 2 3 21 21 H 1.09003 * 109.47429 * 302.88480 * 1 2 3 22 22 H 1.08998 * 109.47580 * 62.88116 * 1 2 3 23 23 H 1.08998 * 110.91177 * 86.12062 * 4 2 1 24 24 H 1.09001 * 110.94181 * 322.53097 * 4 2 1 25 25 H 1.09006 * 110.48821 * 262.20252 * 5 4 2 26 26 H 1.09004 * 110.60273 * 139.61312 * 5 4 2 27 27 H 0.96996 * 120.00358 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9126 1.0207 0.0000 4 6 2.0757 -0.7875 -1.2182 5 6 3.4810 -1.2121 -0.7267 6 6 3.3875 -1.1217 0.8088 7 1 4.0896 -0.3750 1.1797 8 6 3.6961 -2.4638 1.4209 9 8 2.8370 -3.0644 2.0294 10 8 4.9233 -2.9943 1.2922 11 6 5.1329 -4.1985 1.8633 12 1 4.3317 -4.6914 2.3939 13 6 6.3777 -4.8042 1.7682 14 7 7.3524 -4.2051 1.1212 15 14 6.6682 -6.4712 2.5596 16 1 8.0699 -6.8969 2.3165 17 1 6.4274 -6.3738 4.0216 18 1 5.7383 -7.4677 1.9701 19 8 2.0415 -0.7347 1.1328 20 1 -0.3634 -1.0264 0.0517 21 1 -0.3634 0.5580 0.8630 22 1 -0.3634 0.4684 -0.9146 23 1 2.1483 -0.1453 -2.0958 24 1 1.4567 -1.6600 -1.4271 25 1 4.2402 -0.5267 -1.1036 26 1 3.7032 -2.2335 -1.0359 27 1 8.2227 -4.6283 1.0550 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306545749.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:36:35 Heat of formation + Delta-G solvation = -154.978094 kcal Electronic energy + Delta-G solvation = -12960.062834 eV Core-core repulsion = 10489.296754 eV Total energy + Delta-G solvation = -2470.766080 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.46526 -40.00184 -37.18774 -34.37442 -33.32115 -32.75324 -28.56406 -26.92041 -23.68110 -22.17510 -21.89380 -19.91148 -18.67634 -17.69759 -17.19110 -16.70308 -16.27851 -15.83068 -15.22164 -14.81386 -14.29673 -13.70571 -13.44023 -13.32064 -13.15527 -12.68875 -12.53128 -12.39230 -12.17432 -12.06619 -11.85621 -11.80271 -11.14825 -10.72961 -10.63039 -8.57499 -6.38395 1.26364 1.31899 1.47930 1.58050 1.95185 2.38647 2.92154 3.08973 3.52853 3.79781 3.87823 4.20090 4.22687 4.41786 4.58037 4.63597 4.79046 4.88672 4.97784 5.01850 5.11474 5.16585 5.28667 5.78545 5.88973 6.59115 6.86746 7.69270 8.62595 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.075696 B = 0.008286 C = 0.007831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 369.809693 B = 3378.435207 C = 3574.720239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.057 3.943 3 H 0.100 0.900 4 C -0.140 4.140 5 C -0.139 4.139 6 C 0.102 3.898 7 H 0.115 0.885 8 C 0.390 3.610 9 O -0.577 6.577 10 O -0.235 6.235 11 C -0.428 4.428 12 H 0.077 0.923 13 C 0.001 3.999 14 N -0.898 5.898 15 Si 1.018 2.982 16 H -0.255 1.255 17 H -0.263 1.263 18 H -0.262 1.262 19 O -0.381 6.381 20 H 0.045 0.955 21 H 0.064 0.936 22 H 0.105 0.895 23 H 0.124 0.876 24 H 0.067 0.933 25 H 0.117 0.883 26 H 0.057 0.943 27 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.783 7.957 -6.068 12.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.000 4.000 3 H 0.118 0.882 4 C -0.177 4.177 5 C -0.177 4.177 6 C 0.043 3.957 7 H 0.132 0.868 8 C 0.237 3.763 9 O -0.475 6.475 10 O -0.143 6.143 11 C -0.503 4.503 12 H 0.095 0.905 13 C -0.200 4.200 14 N -0.535 5.535 15 Si 0.836 3.164 16 H -0.179 1.179 17 H -0.188 1.188 18 H -0.186 1.186 19 O -0.301 6.301 20 H 0.065 0.935 21 H 0.083 0.917 22 H 0.124 0.876 23 H 0.142 0.858 24 H 0.086 0.914 25 H 0.135 0.865 26 H 0.076 0.924 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.882 7.733 -5.789 11.860 hybrid contribution 0.285 -0.870 0.491 1.039 sum -6.596 6.863 -5.297 10.894 Atomic orbital electron populations 1.21801 0.91661 1.02437 1.04009 1.23631 0.96558 0.96007 0.83756 0.88203 1.23233 0.93844 1.01121 0.99515 1.22906 1.00690 1.03598 0.90493 1.22050 0.86859 0.89829 0.96979 0.86758 1.24388 0.81450 0.89735 0.80750 1.90513 1.49003 1.64181 1.43789 1.83873 1.30319 1.34268 1.65833 1.21382 0.99122 0.94000 1.35839 0.90500 1.26527 0.93053 1.03832 0.96597 1.70051 1.03391 1.40397 1.39657 0.84690 0.78648 0.74478 0.78543 1.17890 1.18750 1.18642 1.88960 1.26374 1.73918 1.40848 0.93535 0.91736 0.87636 0.85780 0.91380 0.86488 0.92360 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.66 71.98 0.70 -2.32 15 2 C 0.06 1.45 3.97 31.27 0.12 1.58 15 3 H 0.10 1.99 8.14 -2.38 -0.02 1.97 15 4 C -0.14 -3.37 6.58 31.89 0.21 -3.16 15 5 C -0.14 -4.42 6.63 31.58 0.21 -4.21 15 6 C 0.10 4.10 3.96 30.22 0.12 4.22 15 7 H 0.12 4.09 8.14 -2.39 -0.02 4.07 15 8 C 0.39 21.35 7.01 71.24 0.50 21.85 15 9 O -0.58 -35.49 15.76 27.13 0.43 -35.06 15 10 O -0.23 -14.32 9.75 14.85 0.14 -14.18 15 11 C -0.43 -26.92 9.65 67.94 0.66 -26.27 15 12 H 0.08 4.96 6.86 -2.91 -0.02 4.94 15 13 C 0.00 0.04 5.49 84.87 0.47 0.51 15 14 N -0.90 -53.22 13.67 21.62 0.30 -52.93 15 15 Si 1.02 44.12 29.55 68.60 2.03 46.15 15 16 H -0.26 -10.03 7.11 99.48 0.71 -9.32 15 17 H -0.26 -11.06 7.11 99.48 0.71 -10.35 15 18 H -0.26 -10.96 7.11 99.48 0.71 -10.25 15 19 O -0.38 -14.84 10.45 -130.26 -1.36 -16.20 15 20 H 0.05 1.16 8.14 -2.39 -0.02 1.14 15 21 H 0.06 1.33 8.14 -2.39 -0.02 1.31 15 22 H 0.11 1.46 8.14 -2.39 -0.02 1.44 15 23 H 0.12 1.94 8.14 -2.39 -0.02 1.92 15 24 H 0.07 1.78 8.06 -2.39 -0.02 1.76 15 25 H 0.12 2.95 8.14 -2.38 -0.02 2.93 15 26 H 0.06 2.19 7.69 -2.38 -0.02 2.17 15 27 H 0.28 15.02 8.31 -92.71 -0.77 14.25 15 Total: -1.00 -77.72 241.35 5.67 -72.05 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: 1.16 Total: 7.98 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 2.98 Total: -7.81 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.30 Total: -52.93 kcal Atomic # 8 Polarization: -64.65 SS G_CDS: -0.79 Total: -65.44 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -77.72 5.67 -72.05 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306545749.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.932 kcal (2) G-P(sol) polarization free energy of solvation -77.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds