Wall clock time and date at job start Mon Mar 30 2020 02:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 110.46001 * 2 1 4 4 C 1.54516 * 110.62336 * 122.67710 * 2 1 3 5 5 C 1.54485 * 104.06128 * 118.70427 * 4 2 1 6 6 O 1.44430 * 104.80217 * 23.97778 * 5 4 2 7 7 C 1.44427 * 105.27354 * 319.49026 * 6 5 4 8 8 H 1.09007 * 110.46553 * 281.63125 * 7 6 5 9 9 C 1.50703 * 110.37114 * 159.34543 * 7 6 5 10 10 O 1.21209 * 120.00103 * 359.61287 * 9 7 6 11 11 O 1.34314 * 119.99874 * 179.61992 * 9 7 6 12 12 C 1.34916 * 116.99843 * 180.02562 * 11 9 7 13 13 H 1.08004 * 120.00324 * 0.26666 * 12 11 9 14 14 C 1.38755 * 120.00021 * 179.97438 * 12 11 9 15 15 N 1.31444 * 119.99829 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99689 * 359.97438 * 14 12 11 17 17 H 1.48493 * 109.47326 * 90.00370 * 16 14 12 18 18 H 1.48506 * 109.46545 * 210.00120 * 16 14 12 19 19 H 1.48498 * 109.47210 * 329.99831 * 16 14 12 20 20 H 1.09002 * 109.47456 * 182.60795 * 1 2 3 21 21 H 1.08995 * 109.47469 * 302.61135 * 1 2 3 22 22 H 1.08997 * 109.46932 * 62.60861 * 1 2 3 23 23 H 1.08995 * 110.51340 * 237.34726 * 4 2 1 24 24 H 1.08994 * 110.51437 * 0.06568 * 4 2 1 25 25 H 1.08990 * 110.37200 * 142.80903 * 5 4 2 26 26 H 1.09000 * 110.37213 * 265.15346 * 5 4 2 27 27 H 0.97000 * 119.99492 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0742 -0.7808 1.2173 5 6 2.8800 -1.9399 0.5899 6 8 3.2417 -1.4679 -0.7263 7 6 2.0713 -0.7797 -1.2186 8 1 1.3287 -1.4954 -1.5716 9 6 2.4487 0.1717 -2.3248 10 8 3.6065 0.2720 -2.6692 11 8 1.5020 0.9086 -2.9288 12 6 1.9070 1.7398 -3.9113 13 1 2.9514 1.7870 -4.1825 14 6 0.9809 2.5295 -4.5776 15 7 1.3756 3.3397 -5.5345 16 14 -0.8266 2.4413 -4.1147 17 1 -1.1143 3.4365 -3.0508 18 1 -1.6583 2.7385 -5.3085 19 1 -1.1442 1.0787 -3.6170 20 1 -0.3634 -1.0266 0.0468 21 1 -0.3634 0.5538 0.8656 22 1 -0.3633 0.4728 -0.9124 23 1 2.7242 -0.1456 1.8189 24 1 1.2533 -1.1689 1.8202 25 1 3.7741 -2.1429 1.1792 26 1 2.2622 -2.8348 0.5154 27 1 0.7282 3.8921 -6.0000 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306688725.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:42 Heat of formation + Delta-G solvation = -128.247779 kcal Electronic energy + Delta-G solvation = -13186.052187 eV Core-core repulsion = 10716.445221 eV Total energy + Delta-G solvation = -2469.606966 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.94252 -38.42037 -35.22408 -33.45576 -32.28060 -29.94099 -27.06777 -25.15293 -23.00779 -20.70299 -19.89609 -17.97547 -17.17771 -15.74841 -15.59907 -15.16281 -14.44423 -14.37422 -13.78631 -13.49693 -12.88094 -12.41970 -12.30767 -12.09958 -11.53263 -11.24428 -11.14594 -10.74335 -10.57508 -10.42044 -10.35596 -9.73707 -9.69143 -8.99907 -8.67714 -6.36102 -4.12027 3.11521 3.20983 3.32699 3.37321 3.57496 4.23910 4.43984 4.64229 4.89556 5.05445 5.09651 5.23609 5.28240 5.52942 5.68848 5.70408 5.79937 5.91377 6.02029 6.17600 6.32004 6.41675 6.93282 7.73042 8.05276 8.64234 9.01724 9.68637 10.72551 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.048363 B = 0.011444 C = 0.009653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.820952 B = 2446.076794 C = 2899.998636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.114 4.114 3 H 0.090 0.910 4 C -0.151 4.151 5 C 0.042 3.958 6 O -0.346 6.346 7 C 0.097 3.903 8 H 0.096 0.904 9 C 0.414 3.586 10 O -0.520 6.520 11 O -0.248 6.248 12 C -0.381 4.381 13 H 0.109 0.891 14 C 0.067 3.933 15 N -0.875 5.875 16 Si 0.903 3.097 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.259 1.259 20 H 0.056 0.944 21 H 0.060 0.940 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.060 0.940 27 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.670 -7.788 12.779 15.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.133 4.133 3 H 0.108 0.892 4 C -0.188 4.188 5 C -0.035 4.035 6 O -0.265 6.265 7 C 0.038 3.962 8 H 0.113 0.887 9 C 0.258 3.742 10 O -0.413 6.413 11 O -0.157 6.157 12 C -0.457 4.457 13 H 0.127 0.873 14 C -0.137 4.137 15 N -0.514 5.514 16 Si 0.728 3.272 17 H -0.198 1.198 18 H -0.207 1.207 19 H -0.183 1.183 20 H 0.075 0.925 21 H 0.079 0.921 22 H 0.090 0.910 23 H 0.095 0.905 24 H 0.098 0.902 25 H 0.111 0.889 26 H 0.078 0.922 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.223 -7.626 12.404 15.160 hybrid contribution -0.874 0.132 0.126 0.893 sum -5.098 -7.494 12.530 15.464 Atomic orbital electron populations 1.21828 0.93313 1.01961 1.03112 1.22446 0.97211 1.00866 0.92762 0.89167 1.23044 1.00271 0.97621 0.97902 1.23454 0.99643 0.96170 0.84210 1.89258 1.33937 1.72817 1.30457 1.22305 0.88097 0.93117 0.92709 0.88662 1.22430 0.84848 0.82734 0.84206 1.90622 1.20581 1.66157 1.63941 1.83480 1.38449 1.48092 1.45688 1.20652 0.97705 1.17084 1.10262 0.87305 1.24517 0.99763 0.94649 0.94761 1.69609 1.35872 1.23960 1.21982 0.86257 0.82986 0.79690 0.78263 1.19790 1.20731 1.18291 0.92453 0.92098 0.91035 0.90480 0.90164 0.88870 0.92172 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.95 37.16 0.33 -1.57 15 2 C -0.11 -1.74 3.24 -89.05 -0.29 -2.03 15 3 H 0.09 1.53 7.86 -51.93 -0.41 1.12 15 4 C -0.15 -1.76 6.74 -25.16 -0.17 -1.93 15 5 C 0.04 0.53 7.63 37.94 0.29 0.82 15 6 O -0.35 -6.49 10.91 -54.46 -0.59 -7.08 15 7 C 0.10 1.82 3.37 -27.11 -0.09 1.72 15 8 H 0.10 1.58 7.87 -51.93 -0.41 1.17 15 9 C 0.41 10.36 7.15 36.01 0.26 10.62 15 10 O -0.52 -15.05 15.79 -25.59 -0.40 -15.45 15 11 O -0.25 -6.63 8.58 -20.70 -0.18 -6.80 15 12 C -0.38 -11.53 10.10 30.92 0.31 -11.22 15 13 H 0.11 3.65 7.09 -52.48 -0.37 3.28 15 14 C 0.07 1.92 5.49 -17.53 -0.10 1.83 15 15 N -0.87 -26.14 13.96 55.48 0.77 -25.37 15 16 Si 0.90 21.24 28.62 -169.99 -4.86 16.38 15 17 H -0.27 -6.20 7.11 56.52 0.40 -5.80 15 18 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 19 H -0.26 -5.87 7.11 56.52 0.40 -5.47 15 20 H 0.06 0.63 8.14 -51.93 -0.42 0.21 15 21 H 0.06 0.68 8.14 -51.93 -0.42 0.25 15 22 H 0.07 1.11 8.14 -51.93 -0.42 0.68 15 23 H 0.08 0.85 8.14 -51.93 -0.42 0.42 15 24 H 0.08 0.73 7.74 -51.93 -0.40 0.33 15 25 H 0.09 0.99 8.14 -51.93 -0.42 0.57 15 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 15 27 H 0.28 7.60 8.31 -40.82 -0.34 7.26 15 LS Contribution 239.57 15.07 3.61 3.61 Total: -1.00 -33.88 239.57 -4.37 -38.25 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -3.26 Total: -1.77 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: 0.55 Total: -1.76 kcal Atomic # 7 Polarization: -26.14 SS G_CDS: 0.77 Total: -25.37 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -1.18 Total: -29.34 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.86 Total: 16.38 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -33.88 -4.37 -38.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306688725.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.995 kcal (2) G-P(sol) polarization free energy of solvation -33.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds