Wall clock time and date at job start Mon Mar 30 2020 02:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 110.56310 * 2 1 4 4 C 1.54504 * 110.51318 * 122.68526 * 2 1 3 5 5 C 1.54477 * 104.06449 * 118.64677 * 4 2 1 6 6 O 1.44432 * 104.80311 * 336.02167 * 5 4 2 7 7 C 1.44431 * 105.27520 * 40.51183 * 6 5 4 8 8 H 1.08994 * 110.36888 * 78.42902 * 7 6 5 9 9 C 1.50695 * 110.37016 * 200.65966 * 7 6 5 10 10 O 1.21216 * 120.00305 * 3.54827 * 9 7 6 11 11 O 1.34313 * 119.99845 * 183.54541 * 9 7 6 12 12 C 1.34914 * 117.00013 * 179.97438 * 11 9 7 13 13 H 1.07999 * 119.99975 * 359.97438 * 12 11 9 14 14 C 1.38750 * 120.00302 * 180.02562 * 12 11 9 15 15 N 1.31444 * 120.00430 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99777 * 0.27075 * 14 12 11 17 17 H 1.48500 * 109.47088 * 269.73192 * 16 14 12 18 18 H 1.48505 * 109.47152 * 29.72669 * 16 14 12 19 19 H 1.48494 * 109.47142 * 149.72669 * 16 14 12 20 20 H 1.09001 * 109.46707 * 182.67362 * 1 2 3 21 21 H 1.09001 * 109.47107 * 302.67136 * 1 2 3 22 22 H 1.09006 * 109.47371 * 62.67420 * 1 2 3 23 23 H 1.08996 * 110.50864 * 359.97438 * 4 2 1 24 24 H 1.09003 * 110.62734 * 237.34719 * 4 2 1 25 25 H 1.08992 * 110.37456 * 217.18895 * 5 4 2 26 26 H 1.08997 * 110.46502 * 94.89565 * 5 4 2 27 27 H 0.97005 * 120.00050 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9129 1.0206 0.0000 4 6 2.0714 -0.7815 1.2179 5 6 2.8758 -1.9422 0.5918 6 8 2.3071 -2.1176 -0.7242 7 6 2.0713 -0.7810 -1.2180 8 1 3.0020 -0.3377 -1.5721 9 6 1.0479 -0.8033 -2.3240 10 8 0.5071 -1.8446 -2.6284 11 8 0.7349 0.3305 -2.9723 12 6 -0.1883 0.2411 -3.9520 13 1 -0.6391 -0.7126 -4.1837 14 6 -0.5580 1.3740 -4.6626 15 7 -1.4579 1.2870 -5.6167 16 14 0.2283 3.0219 -4.2678 17 1 -0.5762 3.7189 -3.2324 18 1 1.6066 2.8038 -3.7599 19 1 0.2797 3.8530 -5.4974 20 1 -0.3633 -1.0266 0.0479 21 1 -0.3633 0.5548 0.8651 22 1 -0.3634 0.4718 -0.9130 23 1 1.2491 -1.1674 1.8203 24 1 2.7215 -0.1486 1.8221 25 1 2.7536 -2.8502 1.1821 26 1 3.9307 -1.6781 0.5171 27 1 -1.7166 2.0792 -6.1132 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306688726.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:45 Heat of formation + Delta-G solvation = -149.954101 kcal Electronic energy + Delta-G solvation = -13295.062558 eV Core-core repulsion = 10824.514335 eV Total energy + Delta-G solvation = -2470.548223 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 200.088 amu Computer time = -0.41 seconds Orbital eigenvalues (eV) -41.70005 -40.02561 -37.31128 -34.68727 -34.38149 -31.19370 -28.56778 -27.17204 -24.22347 -22.36003 -21.11002 -20.18411 -18.59795 -17.81472 -17.30905 -16.63957 -16.33624 -15.83734 -15.15640 -14.72952 -14.46029 -14.18552 -13.81955 -13.56566 -13.25977 -12.51496 -12.41526 -12.29101 -12.16408 -11.90987 -11.87355 -11.66684 -11.08642 -10.84592 -10.74175 -8.56138 -6.44230 1.25316 1.32965 1.50187 1.55621 1.97084 2.28003 2.88498 3.14981 3.45867 3.76282 3.89903 4.21539 4.23756 4.33208 4.46719 4.62908 4.71035 4.84851 4.96465 5.04250 5.17623 5.27694 5.43694 5.73418 5.89993 6.49870 6.79195 7.53769 8.57090 Molecular weight = 200.09amu Principal moments of inertia in cm(-1) A = 0.052941 B = 0.011024 C = 0.010105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.764477 B = 2539.234812 C = 2770.247042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.109 4.109 3 H 0.123 0.877 4 C -0.137 4.137 5 C 0.032 3.968 6 O -0.386 6.386 7 C 0.095 3.905 8 H 0.126 0.874 9 C 0.418 3.582 10 O -0.571 6.571 11 O -0.247 6.247 12 C -0.410 4.410 13 H 0.051 0.949 14 C 0.017 3.983 15 N -0.918 5.918 16 Si 0.984 3.016 17 H -0.255 1.255 18 H -0.245 1.245 19 H -0.266 1.266 20 H 0.036 0.964 21 H 0.094 0.906 22 H 0.035 0.965 23 H 0.082 0.918 24 H 0.120 0.880 25 H 0.109 0.891 26 H 0.089 0.911 27 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.254 3.282 15.273 18.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.128 4.128 3 H 0.141 0.859 4 C -0.175 4.175 5 C -0.043 4.043 6 O -0.306 6.306 7 C 0.036 3.964 8 H 0.143 0.857 9 C 0.264 3.736 10 O -0.466 6.466 11 O -0.156 6.156 12 C -0.486 4.486 13 H 0.069 0.931 14 C -0.183 4.183 15 N -0.557 5.557 16 Si 0.803 3.197 17 H -0.179 1.179 18 H -0.169 1.169 19 H -0.190 1.190 20 H 0.055 0.945 21 H 0.112 0.888 22 H 0.054 0.946 23 H 0.101 0.899 24 H 0.138 0.862 25 H 0.127 0.873 26 H 0.107 0.893 27 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.939 2.894 14.915 18.156 hybrid contribution -0.477 0.017 -0.644 0.802 sum 9.462 2.911 14.272 17.369 Atomic orbital electron populations 1.21973 0.95390 1.01275 1.02587 1.22577 0.96244 1.01456 0.92490 0.85867 1.23057 1.01078 0.96885 0.96456 1.23855 0.98141 1.00598 0.81711 1.89229 1.83665 1.24150 1.33542 1.22586 0.95989 0.85884 0.91906 0.85675 1.23860 0.84091 0.81819 0.83800 1.90591 1.54665 1.34213 1.67108 1.83504 1.53181 1.34811 1.44142 1.20270 1.18337 0.97674 1.12323 0.93105 1.25613 0.95741 1.03312 0.93634 1.69712 1.31072 1.33039 1.21915 0.85078 0.80274 0.75507 0.78887 1.17941 1.16873 1.19021 0.94511 0.88751 0.94608 0.89932 0.86208 0.87336 0.89299 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.10 8.10 71.98 0.58 -4.52 15 2 C -0.11 -2.94 3.63 -9.78 -0.04 -2.98 15 3 H 0.12 2.63 8.14 -2.38 -0.02 2.61 15 4 C -0.14 -2.53 6.74 31.61 0.21 -2.32 15 5 C 0.03 0.69 7.63 72.48 0.55 1.25 15 6 O -0.39 -13.89 10.91 -130.62 -1.43 -15.32 15 7 C 0.10 3.40 3.74 30.35 0.11 3.51 15 8 H 0.13 3.69 8.14 -2.39 -0.02 3.67 15 9 C 0.42 21.26 5.43 71.23 0.39 21.64 15 10 O -0.57 -34.61 15.79 27.00 0.43 -34.18 15 11 O -0.25 -13.42 7.69 14.91 0.11 -13.31 15 12 C -0.41 -25.90 10.10 67.94 0.69 -25.22 15 13 H 0.05 3.70 7.09 -2.91 -0.02 3.68 15 14 C 0.02 0.99 5.49 84.87 0.47 1.46 15 15 N -0.92 -56.24 13.96 21.62 0.30 -55.93 15 16 Si 0.98 43.13 28.62 68.60 1.96 45.09 15 17 H -0.26 -10.44 7.11 99.48 0.71 -9.73 15 18 H -0.25 -10.14 7.11 99.48 0.71 -9.43 15 19 H -0.27 -10.88 7.11 99.48 0.71 -10.18 15 20 H 0.04 1.34 8.14 -2.39 -0.02 1.32 15 21 H 0.09 2.35 8.14 -2.39 -0.02 2.33 15 22 H 0.03 1.46 6.35 -2.38 -0.02 1.44 15 23 H 0.08 1.49 7.73 -2.39 -0.02 1.47 15 24 H 0.12 1.30 8.14 -2.39 -0.02 1.28 15 25 H 0.11 1.95 8.14 -2.39 -0.02 1.93 15 26 H 0.09 1.41 8.14 -2.39 -0.02 1.39 15 27 H 0.29 15.94 8.31 -92.70 -0.77 15.17 15 Total: -1.00 -79.37 235.62 5.51 -73.86 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: 1.16 Total: 6.96 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: 2.97 Total: -7.18 kcal Atomic # 7 Polarization: -56.24 SS G_CDS: 0.30 Total: -55.93 kcal Atomic # 8 Polarization: -61.92 SS G_CDS: -0.88 Total: -62.80 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 1.96 Total: 45.09 kcal Total: -79.37 5.51 -73.86 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306688726.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.091 kcal (2) G-P(sol) polarization free energy of solvation -79.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.41 seconds